Wall clock time and date at job start Sat Apr 11 2020 06:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40161 * 120.29623 * 2 1 4 4 C 1.35186 * 120.31848 * 179.55272 * 3 2 1 5 5 N 1.36240 * 120.70466 * 0.67403 * 4 3 2 6 6 N 1.40020 * 132.01250 * 179.17626 * 5 4 3 7 7 C 1.30735 * 109.60430 * 180.02562 * 6 5 4 8 8 C 1.40555 * 108.74574 * 359.97438 * 7 6 5 9 9 C 1.46566 * 126.58188 * 179.97438 * 8 7 6 10 10 O 1.21718 * 120.00103 * 180.02562 * 9 8 7 11 11 N 1.34778 * 120.00103 * 0.03723 * 9 8 7 12 12 C 1.46500 * 119.99994 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.68572 * 32.00973 * 12 11 9 14 14 C 1.55485 * 110.75411 * 268.95217 * 12 11 9 15 15 C 1.55853 * 103.32237 * 241.51531 * 14 12 11 16 16 H 1.09001 * 116.11977 * 159.23872 * 15 14 12 17 17 C 1.55386 * 105.04276 * 288.04016 * 15 14 12 18 18 C 1.54849 * 103.48427 * 72.08410 * 17 15 14 19 19 C 1.55845 * 110.62147 * 154.99665 * 12 11 9 20 20 H 1.08997 * 116.13339 * 319.33734 * 19 12 11 21 21 N 1.50232 * 101.05167 * 33.02759 * 15 14 12 22 22 C 1.36938 * 130.84076 * 126.06520 * 21 15 14 23 23 H 1.07999 * 120.00325 * 179.65847 * 22 21 15 24 24 C 1.38815 * 119.99817 * 359.66493 * 22 21 15 25 25 N 1.31621 * 119.99673 * 359.71804 * 24 22 21 26 26 Si 1.86795 * 120.00115 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47163 * 59.99668 * 26 24 22 28 28 H 1.48505 * 109.47234 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.47124 * 299.99692 * 26 24 22 30 30 C 1.36570 * 120.08273 * 359.50536 * 5 4 3 31 31 C 1.36443 * 120.29744 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47052 * 270.02368 * 1 2 3 33 33 H 1.09001 * 109.47264 * 30.02101 * 1 2 3 34 34 H 1.08991 * 109.46860 * 150.02482 * 1 2 3 35 35 H 1.08004 * 119.83896 * 0.02562 * 3 2 1 36 36 H 1.08005 * 119.64310 * 179.88536 * 4 3 2 37 37 H 1.07999 * 125.62802 * 180.02562 * 7 6 5 38 38 H 0.96997 * 119.99373 * 359.97438 * 11 9 8 39 39 H 1.08999 * 110.60571 * 123.10462 * 14 12 11 40 40 H 1.08989 * 110.75615 * 359.97438 * 14 12 11 41 41 H 1.08998 * 110.71948 * 313.52463 * 17 15 14 42 42 H 1.09005 * 110.49328 * 190.52550 * 17 15 14 43 43 H 1.09004 * 110.62288 * 241.37847 * 18 17 15 44 44 H 1.08995 * 110.76929 * 118.42686 * 18 17 15 45 45 H 0.97000 * 120.00043 * 180.02562 * 25 24 22 46 46 H 1.08004 * 120.36789 * 0.05297 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.2102 0.0000 4 6 3.5659 1.2107 0.0091 5 7 4.2621 0.0396 0.0046 6 7 5.6352 -0.2343 -0.0032 7 6 5.8244 -1.5279 -0.0055 8 6 4.5729 -2.1675 0.0015 9 6 4.3306 -3.6130 0.0012 10 8 3.1904 -4.0390 0.0072 11 7 5.3704 -4.4705 -0.0056 12 6 5.1282 -5.9154 -0.0053 13 1 4.2086 -6.1517 -0.5407 14 6 5.0718 -6.4643 1.4483 15 6 6.2551 -7.4775 1.4957 16 1 6.6337 -7.7271 2.4869 17 6 5.7868 -8.6850 0.6373 18 6 5.8442 -8.1418 -0.8117 19 6 6.3376 -6.6747 -0.6295 20 1 6.7888 -6.2175 -1.5100 21 7 7.2352 -6.8193 0.5666 22 6 8.5452 -6.4656 0.7510 23 1 9.0965 -5.9983 -0.0516 24 6 9.1645 -6.7076 1.9695 25 7 8.4910 -7.2721 2.9493 26 14 10.9516 -6.2257 2.2208 27 1 11.1014 -4.7610 2.0269 28 1 11.3730 -6.5879 3.5980 29 1 11.8011 -6.9445 1.2377 30 6 3.5961 -1.1527 0.0010 31 6 2.1954 -1.1781 0.0005 32 1 -0.3633 0.0004 1.0276 33 1 -0.3634 0.8898 -0.5142 34 1 -0.3633 -0.8901 -0.5134 35 1 1.6763 2.1468 0.0004 36 1 4.0998 2.1496 0.0071 37 1 6.7841 -2.0233 -0.0108 38 1 6.2789 -4.1310 -0.0106 39 1 4.1244 -6.9717 1.6303 40 1 5.2244 -5.6622 2.1703 41 1 4.7687 -8.9728 0.8994 42 1 6.4684 -9.5269 0.7589 43 1 4.8545 -8.1602 -1.2681 44 1 6.5527 -8.7135 -1.4110 45 1 8.9237 -7.4409 3.8009 46 1 1.6663 -2.1196 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097265136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:05 Heat of formation + Delta-G solvation = 91.263369 kcal Electronic energy + Delta-G solvation = -29444.203054 eV Core-core repulsion = 25528.966848 eV Total energy + Delta-G solvation = -3915.236206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.21948 -41.12256 -39.61795 -38.57930 -35.19860 -34.61828 -34.32463 -32.40409 -30.94898 -30.91219 -30.19377 -29.21389 -27.95519 -26.09685 -24.87232 -23.94213 -23.03267 -22.35145 -21.47229 -20.98279 -20.25129 -18.95037 -18.80562 -17.78820 -17.40605 -17.01750 -16.91071 -16.71457 -16.15143 -15.84948 -15.69054 -15.46505 -15.29060 -14.93227 -14.45935 -14.33029 -14.26515 -13.68705 -13.61083 -13.50754 -12.95762 -12.87573 -12.83854 -12.76739 -12.71449 -12.65859 -12.48024 -12.08347 -11.97304 -11.96467 -11.86658 -11.66305 -11.40063 -11.16690 -10.91851 -10.89693 -10.64741 -10.36120 -9.89411 -8.84696 -8.70936 -7.72669 -5.12264 -0.40466 -0.03959 1.05492 1.12001 1.50575 1.52145 1.57789 2.13921 2.40859 2.52899 2.58946 3.16445 3.40500 3.45334 3.48953 3.67166 3.82022 4.01775 4.05164 4.08673 4.13293 4.29171 4.33384 4.44061 4.49378 4.52310 4.55293 4.67448 4.75095 4.78300 4.84081 4.87533 4.90710 4.96192 5.11193 5.13481 5.20806 5.22877 5.25231 5.34434 5.41592 5.46991 5.55397 5.65573 5.75541 5.79399 5.93114 6.30424 6.32686 6.75982 7.08959 7.39868 7.75864 8.62163 9.34538 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.003120 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.586078 B = 8973.506487 C =10339.620353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.021 4.021 3 C -0.142 4.142 4 C 0.100 3.900 5 N -0.275 5.275 6 N -0.343 5.343 7 C 0.124 3.876 8 C -0.349 4.349 9 C 0.595 3.405 10 O -0.594 6.594 11 N -0.702 5.702 12 C 0.144 3.856 13 H 0.086 0.914 14 C -0.132 4.132 15 C 0.140 3.860 16 H 0.115 0.885 17 C -0.131 4.131 18 C -0.119 4.119 19 C 0.126 3.874 20 H 0.102 0.898 21 N -0.609 5.609 22 C -0.213 4.213 23 H 0.086 0.914 24 C -0.067 4.067 25 N -0.948 5.948 26 Si 0.973 3.027 27 H -0.279 1.279 28 H -0.302 1.302 29 H -0.282 1.282 30 C 0.154 3.846 31 C -0.148 4.148 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.208 0.792 36 H 0.205 0.795 37 H 0.212 0.788 38 H 0.402 0.598 39 H 0.065 0.935 40 H 0.030 0.970 41 H 0.071 0.929 42 H 0.038 0.962 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.244 0.756 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.637 17.231 -8.155 24.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.026 4.026 3 C -0.162 4.162 4 C -0.026 4.026 5 N -0.039 5.039 6 N -0.164 5.164 7 C -0.056 4.056 8 C -0.364 4.364 9 C 0.385 3.615 10 O -0.478 6.478 11 N -0.350 5.350 12 C 0.037 3.963 13 H 0.104 0.896 14 C -0.172 4.172 15 C 0.033 3.967 16 H 0.132 0.868 17 C -0.171 4.171 18 C -0.158 4.158 19 C 0.019 3.981 20 H 0.120 0.880 21 N -0.330 5.330 22 C -0.342 4.342 23 H 0.104 0.896 24 C -0.260 4.260 25 N -0.598 5.598 26 Si 0.803 3.197 27 H -0.205 1.205 28 H -0.229 1.229 29 H -0.208 1.208 30 C 0.033 3.967 31 C -0.168 4.168 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.225 0.775 36 H 0.221 0.779 37 H 0.229 0.771 38 H 0.237 0.763 39 H 0.084 0.916 40 H 0.049 0.951 41 H 0.089 0.911 42 H 0.057 0.943 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.054 0.946 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.389 18.068 -7.999 25.045 hybrid contribution 1.508 -0.984 0.660 1.918 sum -13.881 17.084 -7.339 23.204 Atomic orbital electron populations 1.20982 0.86934 1.05029 1.04343 1.20560 0.99124 0.91471 0.91491 1.21446 0.91122 1.00783 1.02884 1.22451 0.93119 0.88294 0.98699 1.46331 1.06030 1.06061 1.45433 1.77485 0.89045 1.16958 1.32891 1.24347 0.99182 0.90418 0.91635 1.19737 0.92603 0.93071 1.30962 1.17107 0.84429 0.84898 0.75031 1.90666 1.22880 1.79802 1.54414 1.45659 1.08895 1.06376 1.74066 1.22509 0.98687 0.78843 0.96223 0.89559 1.23415 0.98757 0.99088 0.95989 1.23486 0.86305 0.90192 0.96681 0.86786 1.22887 0.99586 0.98200 0.96405 1.22836 1.00767 0.95876 0.96367 1.23377 0.89069 0.94965 0.90701 0.88018 1.46701 1.07405 1.68770 1.10169 1.19331 0.85987 1.31446 0.97468 0.89611 1.25413 1.01630 1.02681 0.96262 1.69720 1.36167 1.50056 1.03900 0.85218 0.80511 0.77977 0.76008 1.20490 1.22879 1.20809 1.19511 0.93796 0.86007 0.97380 1.20755 0.89337 1.01192 1.05500 0.88902 0.87752 0.90939 0.77532 0.77860 0.77120 0.76266 0.91626 0.95096 0.91060 0.94288 0.90054 0.92140 0.94604 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.03 71.24 0.71 -0.21 16 2 C -0.02 -0.31 5.89 -19.82 -0.12 -0.43 16 3 C -0.14 -1.43 9.67 22.03 0.21 -1.22 16 4 C 0.10 1.52 11.17 83.30 0.93 2.45 16 5 N -0.27 -7.12 3.86 -187.28 -0.72 -7.84 16 6 N -0.34 -10.14 12.57 -56.62 -0.71 -10.85 16 7 C 0.12 3.76 11.44 85.42 0.98 4.74 16 8 C -0.35 -11.81 6.17 -19.90 -0.12 -11.94 16 9 C 0.60 22.61 7.78 86.41 0.67 23.28 16 10 O -0.59 -25.15 15.35 -4.41 -0.07 -25.22 16 11 N -0.70 -25.92 5.08 -437.90 -2.23 -28.15 16 12 C 0.14 5.49 2.82 46.83 0.13 5.62 16 13 H 0.09 3.22 7.23 -2.39 -0.02 3.21 16 14 C -0.13 -5.63 6.26 32.44 0.20 -5.43 16 15 C 0.14 6.57 4.69 46.07 0.22 6.79 16 16 H 0.11 6.33 5.52 -2.39 -0.01 6.31 16 17 C -0.13 -5.18 6.42 32.05 0.21 -4.97 16 18 C -0.12 -4.13 6.44 32.21 0.21 -3.93 16 19 C 0.13 4.84 5.06 46.23 0.23 5.07 16 20 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 21 N -0.61 -29.12 2.99 -616.08 -1.84 -30.96 16 22 C -0.21 -11.22 10.59 84.03 0.89 -10.33 16 23 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 24 C -0.07 -3.70 5.50 84.86 0.47 -3.24 16 25 N -0.95 -55.51 10.47 21.65 0.23 -55.28 16 26 Si 0.97 45.03 29.55 68.60 2.03 47.06 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 28 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 29 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 30 C 0.15 4.63 6.76 39.50 0.27 4.89 16 31 C -0.15 -3.68 9.38 22.30 0.21 -3.47 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.10 0.25 8.10 -2.39 -0.02 0.23 16 34 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 35 H 0.21 0.01 8.06 -2.91 -0.02 -0.01 16 36 H 0.20 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.21 5.42 7.46 -2.91 -0.02 5.39 16 38 H 0.40 14.33 7.58 -92.71 -0.70 13.62 16 39 H 0.07 2.57 7.80 -2.39 -0.02 2.55 16 40 H 0.03 1.46 8.00 -2.39 -0.02 1.44 16 41 H 0.07 2.46 7.80 -2.39 -0.02 2.44 16 42 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.08 2.38 7.82 -2.38 -0.02 2.36 16 44 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 46 H 0.14 3.98 7.12 -2.91 -0.02 3.96 16 Total: -1.00 -74.99 374.59 3.30 -71.69 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.31 Total: 31.86 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 6.30 Total: 7.69 kcal Atomic # 7 Polarization: -127.81 SS G_CDS: -5.27 Total: -133.08 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.07 Total: -25.22 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -74.99 3.30 -71.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097265136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.953 kcal (2) G-P(sol) polarization free energy of solvation -74.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds