Wall clock time and date at job start Sat Apr 11 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40571 * 120.13505 * 2 1 4 4 C 1.34851 * 120.34184 * 180.24597 * 3 2 1 5 5 N 1.36681 * 120.64033 * 359.54705 * 4 3 2 6 6 C 1.36195 * 132.29588 * 180.14106 * 5 4 3 7 7 C 1.36576 * 107.09363 * 180.27997 * 6 5 4 8 8 C 1.47585 * 125.91340 * 180.02562 * 7 6 5 9 9 O 1.21590 * 120.00327 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99672 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99788 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.55871 * 32.10540 * 11 10 8 13 13 C 1.54853 * 110.62988 * 269.02714 * 11 10 8 14 14 C 1.55845 * 103.44478 * 241.51482 * 13 11 10 15 15 H 1.09005 * 115.55771 * 158.81340 * 14 13 11 16 16 C 1.55845 * 105.74013 * 287.98692 * 14 13 11 17 17 C 1.57708 * 103.12576 * 70.90985 * 16 14 13 18 18 C 1.55845 * 102.67681 * 1.20718 * 17 16 14 19 19 H 1.08999 * 115.55975 * 158.49605 * 18 17 16 20 20 N 1.50234 * 101.75812 * 32.09715 * 18 17 16 21 21 C 1.36937 * 130.84376 * 125.86075 * 20 18 17 22 22 H 1.07999 * 119.99413 * 0.02562 * 21 20 18 23 23 C 1.38802 * 120.00181 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00475 * 0.02562 * 23 21 20 25 25 Si 1.86809 * 119.99936 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46983 * 89.99836 * 25 23 21 27 27 H 1.48499 * 109.47197 * 209.99665 * 25 23 21 28 28 H 1.48498 * 109.46713 * 329.99995 * 25 23 21 29 29 N 1.34577 * 108.16298 * 0.02562 * 7 6 5 30 30 C 1.32233 * 109.02813 * 359.97438 * 29 7 6 31 31 C 1.35896 * 120.13565 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47262 * 269.98033 * 1 2 3 33 33 H 1.09007 * 109.46863 * 29.98347 * 1 2 3 34 34 H 1.09005 * 109.47288 * 149.98026 * 1 2 3 35 35 H 1.08002 * 119.82930 * 0.03822 * 3 2 1 36 36 H 1.08005 * 119.68066 * 179.70185 * 4 3 2 37 37 H 1.07999 * 126.44880 * 0.31370 * 6 5 4 38 38 H 0.97002 * 120.00392 * 0.02562 * 10 8 7 39 39 H 1.09003 * 110.62484 * 359.97438 * 13 11 10 40 40 H 1.08989 * 110.62735 * 123.02123 * 13 11 10 41 41 H 1.09000 * 110.62629 * 190.50784 * 16 14 13 42 42 H 1.09006 * 110.62555 * 313.36148 * 16 14 13 43 43 H 1.08994 * 111.91122 * 242.53745 * 17 16 14 44 44 H 1.09000 * 110.06392 * 119.01553 * 17 16 14 45 45 H 0.96995 * 120.00410 * 180.02562 * 24 23 21 46 46 H 1.07997 * 120.32673 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2127 1.2157 0.0000 4 6 3.5612 1.2206 -0.0050 5 7 4.2620 0.0472 -0.0008 6 6 5.5969 -0.2232 -0.0017 7 6 5.7313 -1.5823 -0.0022 8 6 7.0059 -2.3262 -0.0027 9 8 8.0618 -1.7232 -0.0021 10 7 6.9995 -3.6740 -0.0036 11 6 8.2648 -4.4124 -0.0047 12 1 9.0314 -3.8591 0.5379 13 6 8.7231 -4.7076 -1.4541 14 6 8.7455 -6.2646 -1.5170 15 1 8.6892 -6.6957 -2.5166 16 6 9.9727 -6.7046 -0.6631 17 6 9.5160 -6.3842 0.8120 18 6 8.0729 -5.8314 0.6107 19 1 7.4241 -5.8808 1.4852 20 7 7.6129 -6.6067 -0.5911 21 6 6.5029 -7.3851 -0.7836 22 1 5.7881 -7.5133 0.0159 23 6 6.2964 -8.0094 -2.0060 24 7 7.1677 -7.8535 -2.9801 25 14 4.7817 -9.0707 -2.2687 26 1 3.6737 -8.2313 -2.7912 27 1 5.0930 -10.1441 -3.2465 28 1 4.3745 -9.6803 -0.9773 29 7 4.5000 -2.1256 -0.0022 30 6 3.6009 -1.1559 -0.0012 31 6 2.1892 -1.1753 -0.0005 32 1 -0.3634 -0.0004 1.0277 33 1 -0.3633 0.8902 -0.5136 34 1 -0.3634 -0.8898 -0.5142 35 1 1.6721 2.1507 0.0006 36 1 4.0926 2.1609 -0.0098 37 1 6.3982 0.5009 -0.0015 38 1 6.1572 -4.1551 -0.0044 39 1 8.0087 -4.3050 -2.1722 40 1 9.7188 -4.3017 -1.6321 41 1 10.1754 -7.7667 -0.8010 42 1 10.8507 -6.1111 -0.9183 43 1 10.1527 -5.6340 1.2810 44 1 9.4976 -7.2987 1.4048 45 1 7.0232 -8.2895 -3.8344 46 1 1.6568 -2.1149 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097459918.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:14 Heat of formation + Delta-G solvation = 98.880410 kcal Electronic energy + Delta-G solvation = -29188.695237 eV Core-core repulsion = 25273.789331 eV Total energy + Delta-G solvation = -3914.905906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.96493 -39.61206 -38.39662 -37.52434 -34.46622 -33.61518 -32.40509 -30.97279 -30.20470 -28.99090 -28.72134 -27.86801 -27.03935 -24.40769 -23.97204 -22.94245 -21.92828 -21.09652 -19.71801 -19.57440 -18.63485 -18.17947 -17.09535 -16.90771 -16.45084 -16.17805 -15.60809 -15.23717 -14.77697 -14.73265 -14.32407 -14.21814 -13.95328 -13.83565 -13.68449 -13.31100 -12.90291 -12.70390 -12.40924 -11.97804 -11.93209 -11.82912 -11.70461 -11.14666 -11.05202 -10.89885 -10.86103 -10.83465 -10.49591 -10.35275 -10.26472 -10.03290 -9.88532 -9.75034 -9.22188 -9.11311 -9.03999 -8.89494 -8.34328 -8.01472 -6.86998 -5.66946 -3.05568 0.42579 1.00783 2.11688 2.31250 3.16968 3.42729 3.47452 3.49020 3.62507 3.78726 3.91267 4.20335 4.43459 4.48053 4.51215 4.76837 4.93129 5.16170 5.20737 5.21703 5.25344 5.33265 5.42930 5.44940 5.59728 5.70951 5.76106 5.76989 5.94468 5.99400 6.09630 6.16315 6.20078 6.23853 6.33329 6.37542 6.49692 6.55325 6.66714 6.79419 6.80839 6.88903 7.02016 7.18817 7.39525 7.54500 7.59683 7.85872 8.15332 8.24419 8.67977 9.14961 9.78214 10.59015 11.42222 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011403 B = 0.003269 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.836374 B = 8563.630151 C =10509.268802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.075 4.075 3 C -0.137 4.137 4 C 0.058 3.942 5 N -0.368 5.368 6 C -0.025 4.025 7 C 0.016 3.984 8 C 0.593 3.407 9 O -0.552 6.552 10 N -0.684 5.684 11 C 0.127 3.873 12 H 0.081 0.919 13 C -0.143 4.143 14 C 0.153 3.847 15 H 0.152 0.848 16 C -0.136 4.136 17 C -0.130 4.130 18 C 0.125 3.875 19 H 0.087 0.913 20 N -0.590 5.590 21 C -0.210 4.210 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.921 5.921 25 Si 0.914 3.086 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 N -0.457 5.457 30 C 0.227 3.773 31 C -0.076 4.076 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.151 0.849 36 H 0.165 0.835 37 H 0.195 0.805 38 H 0.413 0.587 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.253 0.747 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.863 18.711 6.656 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.081 4.081 3 C -0.158 4.158 4 C -0.063 4.063 5 N -0.040 5.040 6 C -0.160 4.160 7 C -0.117 4.117 8 C 0.378 3.622 9 O -0.431 6.431 10 N -0.332 5.332 11 C 0.021 3.979 12 H 0.099 0.901 13 C -0.183 4.183 14 C 0.046 3.954 15 H 0.169 0.831 16 C -0.175 4.175 17 C -0.170 4.170 18 C 0.017 3.983 19 H 0.105 0.895 20 N -0.310 5.310 21 C -0.338 4.338 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.569 5.569 25 Si 0.745 3.255 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 N -0.179 5.179 30 C -0.018 4.018 31 C -0.096 4.096 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.168 0.832 36 H 0.182 0.818 37 H 0.212 0.788 38 H 0.249 0.751 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.391 18.038 6.478 20.923 hybrid contribution -0.955 0.229 -0.174 0.997 sum -9.346 18.267 6.304 21.466 Atomic orbital electron populations 1.20766 0.89604 1.03464 1.02877 1.19736 0.97071 0.91956 0.99357 1.20726 0.92076 0.99290 1.03659 1.21628 0.93026 0.88671 1.02983 1.42785 1.07200 1.07786 1.46277 1.22583 0.83390 0.97938 1.12095 1.20831 0.92847 0.91005 1.07018 1.16902 0.85784 0.82552 0.76999 1.90752 1.30976 1.69003 1.52329 1.45867 1.11274 1.04936 1.71154 1.22726 0.84288 0.92819 0.98106 0.90071 1.23455 0.99270 1.00433 0.95155 1.23741 0.84227 0.89560 0.97853 0.83082 1.23514 0.98475 1.00173 0.95339 1.23364 0.96742 0.99496 0.97360 1.23144 0.94138 0.89452 0.91600 0.89495 1.46516 1.22713 1.53813 1.07991 1.19010 0.97038 1.20253 0.97527 0.90385 1.24676 0.98788 1.01071 0.96060 1.69460 1.35741 1.47769 1.03938 0.86067 0.82222 0.79734 0.77443 1.21716 1.21795 1.20806 1.70923 0.97995 1.28671 1.20264 1.20958 0.94425 0.80128 1.06330 1.20198 0.88027 0.99820 1.01534 0.90585 0.91056 0.90821 0.83170 0.81755 0.78824 0.75120 0.92152 0.92738 0.92447 0.93486 0.92708 0.92507 0.93644 0.82933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 10.02 36.00 0.36 -0.20 16 2 C -0.08 -0.60 5.88 -104.58 -0.62 -1.22 16 3 C -0.14 -0.92 9.67 -39.90 -0.39 -1.30 16 4 C 0.06 0.47 10.93 -16.59 -0.18 0.29 16 5 N -0.37 -4.51 2.93 -62.37 -0.18 -4.69 16 6 C -0.03 -0.35 11.47 -16.21 -0.19 -0.53 16 7 C 0.02 0.28 6.94 -83.45 -0.58 -0.30 16 8 C 0.59 11.44 7.82 -12.45 -0.10 11.34 16 9 O -0.55 -11.47 16.52 5.29 0.09 -11.39 16 10 N -0.68 -13.53 5.07 -52.41 -0.27 -13.79 16 11 C 0.13 2.53 2.80 -65.43 -0.18 2.35 16 12 H 0.08 1.59 7.21 -51.93 -0.37 1.21 16 13 C -0.14 -3.07 6.24 -24.24 -0.15 -3.22 16 14 C 0.15 3.59 4.67 -62.80 -0.29 3.30 16 15 H 0.15 4.06 5.52 -51.93 -0.29 3.77 16 16 C -0.14 -2.75 6.58 -22.64 -0.15 -2.90 16 17 C -0.13 -2.43 6.60 -22.64 -0.15 -2.57 16 18 C 0.13 2.58 5.01 -62.80 -0.31 2.26 16 19 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 20 N -0.59 -14.51 2.99 -145.82 -0.44 -14.95 16 21 C -0.21 -5.70 10.59 -15.06 -0.16 -5.86 16 22 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 24 N -0.92 -26.47 10.47 55.49 0.58 -25.89 16 25 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 N -0.46 -7.94 11.01 -9.35 -0.10 -8.05 16 30 C 0.23 3.24 7.80 -156.04 -1.22 2.03 16 31 C -0.08 -0.83 9.75 -39.30 -0.38 -1.21 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.26 8.10 -51.92 -0.42 -0.16 16 34 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 35 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 36 H 0.17 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.19 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.41 8.48 8.36 -40.82 -0.34 8.14 16 39 H 0.06 1.42 7.98 -51.93 -0.41 1.00 16 40 H 0.05 1.08 7.85 -51.94 -0.41 0.67 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.05 0.85 7.86 -51.93 -0.41 0.44 16 43 H 0.05 0.90 7.81 -51.93 -0.41 0.49 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 377.82 15.07 5.69 5.69 Total: -1.00 -33.17 377.82 -10.83 -44.01 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.41 Total: 10.13 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -4.78 Total: 1.86 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: -0.41 Total: -67.37 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.17 -10.83 -44.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097459918.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.886 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds