Wall clock time and date at job start Sat Apr 11 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40571 * 120.13505 * 2 1 4 4 C 1.34851 * 120.34184 * 180.24597 * 3 2 1 5 5 N 1.36681 * 120.64033 * 359.54705 * 4 3 2 6 6 C 1.36195 * 132.29588 * 180.14106 * 5 4 3 7 7 C 1.36576 * 107.09363 * 180.27997 * 6 5 4 8 8 C 1.47585 * 125.91340 * 180.02562 * 7 6 5 9 9 O 1.21590 * 120.00327 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99672 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99788 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.55871 * 32.10540 * 11 10 8 13 13 C 1.54853 * 110.62988 * 269.02714 * 11 10 8 14 14 C 1.55845 * 103.44478 * 241.51482 * 13 11 10 15 15 H 1.09005 * 115.55771 * 158.81340 * 14 13 11 16 16 C 1.55845 * 105.74013 * 287.98692 * 14 13 11 17 17 C 1.57708 * 103.12576 * 70.90985 * 16 14 13 18 18 C 1.55845 * 102.67681 * 1.20718 * 17 16 14 19 19 H 1.08999 * 115.55975 * 158.49605 * 18 17 16 20 20 N 1.50234 * 101.75812 * 32.09715 * 18 17 16 21 21 C 1.36937 * 130.84376 * 125.86075 * 20 18 17 22 22 H 1.07999 * 119.99413 * 0.02562 * 21 20 18 23 23 C 1.38802 * 120.00181 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00475 * 0.02562 * 23 21 20 25 25 Si 1.86809 * 119.99936 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46983 * 89.99836 * 25 23 21 27 27 H 1.48499 * 109.47197 * 209.99665 * 25 23 21 28 28 H 1.48498 * 109.46713 * 329.99995 * 25 23 21 29 29 N 1.34577 * 108.16298 * 0.02562 * 7 6 5 30 30 C 1.32233 * 109.02813 * 359.97438 * 29 7 6 31 31 C 1.35896 * 120.13565 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47262 * 269.98033 * 1 2 3 33 33 H 1.09007 * 109.46863 * 29.98347 * 1 2 3 34 34 H 1.09005 * 109.47288 * 149.98026 * 1 2 3 35 35 H 1.08002 * 119.82930 * 0.03822 * 3 2 1 36 36 H 1.08005 * 119.68066 * 179.70185 * 4 3 2 37 37 H 1.07999 * 126.44880 * 0.31370 * 6 5 4 38 38 H 0.97002 * 120.00392 * 0.02562 * 10 8 7 39 39 H 1.09003 * 110.62484 * 359.97438 * 13 11 10 40 40 H 1.08989 * 110.62735 * 123.02123 * 13 11 10 41 41 H 1.09000 * 110.62629 * 190.50784 * 16 14 13 42 42 H 1.09006 * 110.62555 * 313.36148 * 16 14 13 43 43 H 1.08994 * 111.91122 * 242.53745 * 17 16 14 44 44 H 1.09000 * 110.06392 * 119.01553 * 17 16 14 45 45 H 0.96995 * 120.00410 * 180.02562 * 24 23 21 46 46 H 1.07997 * 120.32673 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2127 1.2157 0.0000 4 6 3.5612 1.2206 -0.0050 5 7 4.2620 0.0472 -0.0008 6 6 5.5969 -0.2232 -0.0017 7 6 5.7313 -1.5823 -0.0022 8 6 7.0059 -2.3262 -0.0027 9 8 8.0618 -1.7232 -0.0021 10 7 6.9995 -3.6740 -0.0036 11 6 8.2648 -4.4124 -0.0047 12 1 9.0314 -3.8591 0.5379 13 6 8.7231 -4.7076 -1.4541 14 6 8.7455 -6.2646 -1.5170 15 1 8.6892 -6.6957 -2.5166 16 6 9.9727 -6.7046 -0.6631 17 6 9.5160 -6.3842 0.8120 18 6 8.0729 -5.8314 0.6107 19 1 7.4241 -5.8808 1.4852 20 7 7.6129 -6.6067 -0.5911 21 6 6.5029 -7.3851 -0.7836 22 1 5.7881 -7.5133 0.0159 23 6 6.2964 -8.0094 -2.0060 24 7 7.1677 -7.8535 -2.9801 25 14 4.7817 -9.0707 -2.2687 26 1 3.6737 -8.2313 -2.7912 27 1 5.0930 -10.1441 -3.2465 28 1 4.3745 -9.6803 -0.9773 29 7 4.5000 -2.1256 -0.0022 30 6 3.6009 -1.1559 -0.0012 31 6 2.1892 -1.1753 -0.0005 32 1 -0.3634 -0.0004 1.0277 33 1 -0.3633 0.8902 -0.5136 34 1 -0.3634 -0.8898 -0.5142 35 1 1.6721 2.1507 0.0006 36 1 4.0926 2.1609 -0.0098 37 1 6.3982 0.5009 -0.0015 38 1 6.1572 -4.1551 -0.0044 39 1 8.0087 -4.3050 -2.1722 40 1 9.7188 -4.3017 -1.6321 41 1 10.1754 -7.7667 -0.8010 42 1 10.8507 -6.1111 -0.9183 43 1 10.1527 -5.6340 1.2810 44 1 9.4976 -7.2987 1.4048 45 1 7.0232 -8.2895 -3.8344 46 1 1.6568 -2.1149 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097459918.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:13 Heat of formation + Delta-G solvation = 79.166028 kcal Electronic energy + Delta-G solvation = -29189.550117 eV Core-core repulsion = 25273.789331 eV Total energy + Delta-G solvation = -3915.760786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.91582 -41.20352 -39.82888 -38.49945 -35.46334 -35.12097 -34.34509 -31.89258 -30.96792 -30.91940 -30.34022 -29.42122 -27.95489 -26.15990 -25.21201 -23.92853 -22.75840 -22.57496 -21.49870 -21.02563 -20.30176 -19.16851 -18.85341 -18.06097 -17.58364 -17.18035 -17.03655 -16.74107 -16.03869 -15.90086 -15.64822 -15.55919 -15.37819 -15.04390 -14.85869 -14.41443 -14.25639 -13.71521 -13.66077 -13.41246 -12.96325 -12.92729 -12.91844 -12.76962 -12.74233 -12.61262 -12.52987 -12.12043 -11.96739 -11.90196 -11.68203 -11.63562 -11.50729 -11.30417 -11.01532 -10.93908 -10.77414 -10.10411 -9.82680 -8.90631 -8.85901 -7.75550 -5.15059 -0.36078 0.15019 0.99099 1.43522 1.46832 1.48614 1.56205 2.24160 2.29309 2.50433 2.53340 2.99021 3.37184 3.43536 3.46157 3.69980 3.77682 4.00148 4.04931 4.09586 4.12041 4.25248 4.28006 4.43097 4.43574 4.48957 4.64207 4.67542 4.68787 4.78779 4.83798 4.86802 4.90467 4.99952 5.05586 5.16140 5.17436 5.19509 5.28504 5.37657 5.40025 5.50876 5.53849 5.58570 5.70191 5.89585 5.95765 6.27919 6.45234 6.70388 7.06781 7.16376 7.72714 8.58653 9.31710 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011403 B = 0.003269 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.836374 B = 8563.630151 C =10509.268802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.047 4.047 3 C -0.128 4.128 4 C 0.049 3.951 5 N -0.369 5.369 6 C -0.014 4.014 7 C -0.026 4.026 8 C 0.594 3.406 9 O -0.572 6.572 10 N -0.690 5.690 11 C 0.137 3.863 12 H 0.095 0.905 13 C -0.133 4.133 14 C 0.139 3.861 15 H 0.115 0.885 16 C -0.128 4.128 17 C -0.117 4.117 18 C 0.124 3.876 19 H 0.095 0.905 20 N -0.610 5.610 21 C -0.214 4.214 22 H 0.080 0.920 23 C -0.067 4.067 24 N -0.948 5.948 25 Si 0.974 3.026 26 H -0.293 1.293 27 H -0.296 1.296 28 H -0.270 1.270 29 N -0.510 5.510 30 C 0.218 3.782 31 C -0.121 4.121 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.198 0.802 36 H 0.206 0.794 37 H 0.219 0.781 38 H 0.406 0.594 39 H 0.028 0.972 40 H 0.073 0.927 41 H 0.042 0.958 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.245 0.755 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.362 21.914 8.165 25.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.053 4.053 3 C -0.147 4.147 4 C -0.071 4.071 5 N -0.040 5.040 6 C -0.149 4.149 7 C -0.157 4.157 8 C 0.381 3.619 9 O -0.453 6.453 10 N -0.337 5.337 11 C 0.031 3.969 12 H 0.112 0.888 13 C -0.173 4.173 14 C 0.033 3.967 15 H 0.133 0.867 16 C -0.167 4.167 17 C -0.157 4.157 18 C 0.016 3.984 19 H 0.112 0.888 20 N -0.332 5.332 21 C -0.343 4.343 22 H 0.098 0.902 23 C -0.259 4.259 24 N -0.598 5.598 25 Si 0.803 3.197 26 H -0.221 1.221 27 H -0.223 1.223 28 H -0.195 1.195 29 N -0.232 5.232 30 C -0.028 4.028 31 C -0.141 4.141 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.215 0.785 36 H 0.222 0.778 37 H 0.235 0.765 38 H 0.241 0.759 39 H 0.047 0.953 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.055 0.945 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.885 21.267 8.022 24.786 hybrid contribution -0.689 -0.555 -0.627 1.085 sum -10.574 20.711 7.394 24.402 Atomic orbital electron populations 1.20903 0.87151 1.04681 1.04100 1.20256 0.98760 0.91402 0.94865 1.21356 0.91707 1.00452 1.01231 1.22533 0.93935 0.88537 1.02054 1.42950 1.06609 1.08609 1.45879 1.22810 0.84653 0.96998 1.10483 1.20615 0.92120 0.92368 1.10644 1.17205 0.86603 0.82217 0.75908 1.90707 1.31938 1.69212 1.53431 1.45879 1.10750 1.05405 1.71682 1.22608 0.84806 0.92687 0.96825 0.88763 1.23326 0.99478 0.98948 0.95577 1.23588 0.85669 0.90619 0.96811 0.86747 1.23391 0.97862 0.99609 0.95834 1.23310 0.95541 1.00506 0.96303 1.23356 0.95377 0.89078 0.90569 0.88751 1.46704 1.22541 1.54057 1.09885 1.19320 0.97793 1.19724 0.97460 0.90220 1.25411 1.01435 1.02935 0.96161 1.69714 1.37214 1.48883 1.03954 0.85130 0.79134 0.77974 0.77427 1.22109 1.22281 1.19546 1.70785 0.98648 1.30720 1.23035 1.21364 0.95328 0.80496 1.05619 1.20373 0.86876 1.01360 1.05500 0.89117 0.88551 0.90970 0.78511 0.77754 0.76457 0.75896 0.95290 0.90821 0.93935 0.90853 0.89367 0.92115 0.94508 0.83204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.02 71.23 0.71 0.00 16 2 C -0.05 -0.61 5.88 -19.84 -0.12 -0.72 16 3 C -0.13 -1.12 9.67 22.06 0.21 -0.90 16 4 C 0.05 0.61 10.93 83.16 0.91 1.52 16 5 N -0.37 -8.57 2.93 -351.24 -1.03 -9.60 16 6 C -0.01 -0.37 11.47 83.63 0.96 0.59 16 7 C -0.03 -0.92 6.94 40.80 0.28 -0.64 16 8 C 0.59 23.72 7.82 86.71 0.68 24.40 16 9 O -0.57 -24.09 16.52 -4.00 -0.07 -24.15 16 10 N -0.69 -28.35 5.07 -437.99 -2.22 -30.57 16 11 C 0.14 5.49 2.80 46.61 0.13 5.62 16 12 H 0.09 3.57 7.21 -2.39 -0.02 3.55 16 13 C -0.13 -5.84 6.24 32.21 0.20 -5.64 16 14 C 0.14 6.75 4.67 46.23 0.22 6.96 16 15 H 0.12 6.49 5.52 -2.38 -0.01 6.48 16 16 C -0.13 -5.11 6.58 33.25 0.22 -4.89 16 17 C -0.12 -4.17 6.60 33.25 0.22 -3.95 16 18 C 0.12 5.05 5.01 46.23 0.23 5.28 16 19 H 0.09 3.69 8.14 -2.39 -0.02 3.67 16 20 N -0.61 -30.81 2.99 -615.24 -1.84 -32.65 16 21 C -0.21 -11.94 10.59 84.03 0.89 -11.05 16 22 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 23 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 24 N -0.95 -57.00 10.47 21.65 0.23 -56.78 16 25 Si 0.97 46.90 29.55 68.60 2.03 48.92 16 26 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 27 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 28 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 29 N -0.51 -18.72 11.01 -183.50 -2.02 -20.74 16 30 C 0.22 6.34 7.80 134.20 1.05 7.38 16 31 C -0.12 -2.61 9.75 22.45 0.22 -2.40 16 32 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.10 0.20 8.10 -2.38 -0.02 0.19 16 34 H 0.07 0.54 8.08 -2.38 -0.02 0.52 16 35 H 0.20 -0.06 8.06 -2.91 -0.02 -0.08 16 36 H 0.21 0.80 8.06 -2.91 -0.02 0.78 16 37 H 0.22 4.56 8.06 -2.91 -0.02 4.54 16 38 H 0.41 17.73 8.36 -92.71 -0.77 16.95 16 39 H 0.03 1.42 7.98 -2.39 -0.02 1.40 16 40 H 0.07 2.89 7.85 -2.39 -0.02 2.88 16 41 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 2.52 7.86 -2.38 -0.02 2.51 16 43 H 0.09 2.59 7.81 -2.39 -0.02 2.57 16 44 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 46 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -77.62 377.82 2.80 -74.83 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.24 Total: 32.55 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 7.48 Total: 18.19 kcal Atomic # 7 Polarization: -143.45 SS G_CDS: -6.88 Total: -150.33 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.07 Total: -24.15 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -77.62 2.80 -74.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097459918.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.994 kcal (2) G-P(sol) polarization free energy of solvation -77.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds