Wall clock time and date at job start Sat Apr 11 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30183 * 125.09121 * 2 1 4 4 C 1.34883 * 109.73147 * 179.97438 * 3 2 1 5 5 C 1.46295 * 126.49070 * 180.25801 * 4 3 2 6 6 O 1.21775 * 119.99588 * 179.68575 * 5 4 3 7 7 N 1.34772 * 120.00273 * 359.69442 * 5 4 3 8 8 C 1.46503 * 120.00201 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.55631 * 32.10245 * 8 7 5 10 10 C 1.54845 * 110.62584 * 269.02568 * 8 7 5 11 11 C 1.55847 * 103.44665 * 241.50644 * 10 8 7 12 12 H 1.08996 * 116.12736 * 159.15009 * 11 10 8 13 13 C 1.55836 * 105.06511 * 288.18033 * 11 10 8 14 14 C 1.54854 * 103.45062 * 71.82190 * 13 11 10 15 15 C 1.55840 * 110.62502 * 154.99650 * 8 7 5 16 16 H 1.08993 * 115.56698 * 319.68414 * 15 8 7 17 17 N 1.50239 * 101.04810 * 32.94089 * 11 10 8 18 18 C 1.36942 * 130.83927 * 126.00963 * 17 11 10 19 19 H 1.07998 * 119.99777 * 180.02562 * 18 17 11 20 20 C 1.38814 * 119.99846 * 0.02562 * 18 17 11 21 21 N 1.31613 * 119.99850 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99993 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47325 * 60.00267 * 22 20 18 24 24 H 1.48495 * 109.47494 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47280 * 300.00594 * 22 20 18 26 26 C 1.40145 * 107.01014 * 0.02562 * 4 3 2 27 27 C 1.40179 * 133.57625 * 179.97438 * 26 4 3 28 28 C 1.36335 * 119.19833 * 179.97438 * 27 26 4 29 29 C 1.40387 * 119.55656 * 0.02562 * 28 27 26 30 30 C 1.35023 * 120.44770 * 359.95487 * 29 28 27 31 31 N 1.36254 * 125.08907 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47449 * 270.00118 * 1 2 3 33 33 H 1.09001 * 109.46933 * 30.00608 * 1 2 3 34 34 H 1.09008 * 109.46909 * 150.00310 * 1 2 3 35 35 H 0.97002 * 119.99998 * 359.97438 * 7 5 4 36 36 H 1.08998 * 110.63096 * 0.02562 * 10 8 7 37 37 H 1.09002 * 110.62399 * 123.02229 * 10 8 7 38 38 H 1.09002 * 110.62785 * 190.30851 * 13 11 10 39 39 H 1.09000 * 110.62602 * 313.33226 * 13 11 10 40 40 H 1.08999 * 110.62765 * 241.51526 * 14 13 11 41 41 H 1.08996 * 110.62607 * 118.48508 * 14 13 11 42 42 H 0.96999 * 120.00117 * 179.97438 * 21 20 18 43 43 H 1.07994 * 120.40260 * 0.02562 * 27 26 4 44 44 H 1.07999 * 120.22181 * 180.02562 * 28 27 26 45 45 H 1.08009 * 119.77891 * 179.97438 * 29 28 27 46 46 H 1.07996 * 119.70427 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2554 1.0652 0.0000 4 6 3.5561 0.7079 0.0006 5 6 4.7065 1.6116 0.0061 6 8 5.8367 1.1583 0.0117 7 7 4.5156 2.9457 0.0050 8 6 5.6677 3.8507 0.0110 9 1 6.5055 3.4072 -0.5269 10 6 6.0737 4.2071 1.4622 11 6 5.8824 5.7525 1.5229 12 1 5.7673 6.1832 2.5175 13 6 7.0452 6.3386 0.6668 14 6 6.6392 5.9822 -0.7844 15 6 5.2861 5.2292 -0.6075 16 1 4.6411 5.1887 -1.4852 17 7 4.7183 5.9353 0.5909 18 6 3.5110 6.5545 0.7767 19 1 2.7896 6.5831 -0.0265 20 6 3.2145 7.1451 1.9974 21 7 4.0939 7.1106 2.9760 22 14 1.5681 7.9903 2.2507 23 1 0.4718 7.0085 2.0516 24 1 1.4991 8.5370 3.6296 25 1 1.4243 9.0977 1.2718 26 6 3.5964 -0.6929 0.0003 27 6 4.6394 -1.6296 0.0002 28 6 4.3390 -2.9594 0.0005 29 6 2.9953 -3.3659 0.0004 30 6 2.0033 -2.4498 0.0009 31 7 2.2903 -1.1149 0.0005 32 1 -0.3634 0.0000 1.0277 33 1 -0.3633 0.8899 -0.5139 34 1 -0.3633 -0.8901 -0.5138 35 1 3.6153 3.3068 0.0002 36 1 5.4183 3.7102 2.1774 37 1 7.1149 3.9416 1.6457 38 1 7.1083 7.4194 0.7934 39 1 7.9912 5.8644 0.9282 40 1 7.3837 5.3313 -1.2426 41 1 6.5008 6.8862 -1.3774 42 1 3.8869 7.5237 3.8289 43 1 5.6684 -1.3017 0.0007 44 1 5.1295 -3.6953 0.0009 45 1 2.7532 -4.4185 0.0002 46 1 0.9738 -2.7758 0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097538679.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:19 Heat of formation + Delta-G solvation = 96.433736 kcal Electronic energy + Delta-G solvation = -29650.363439 eV Core-core repulsion = 25735.351437 eV Total energy + Delta-G solvation = -3915.012002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.97177 -39.55174 -38.17412 -37.56358 -33.68834 -33.59947 -32.42164 -31.72687 -30.30851 -29.02709 -28.79768 -27.91828 -26.67346 -24.22828 -24.04764 -23.54955 -21.31559 -21.13876 -19.76411 -19.66101 -18.59602 -17.75771 -17.05102 -16.89773 -16.31595 -16.26651 -15.73625 -15.52627 -14.74930 -14.68297 -14.22716 -14.11446 -13.76034 -13.67336 -13.37681 -13.25358 -12.85565 -12.67533 -12.42048 -11.97833 -11.89964 -11.85863 -11.71083 -11.16451 -11.02655 -10.86777 -10.82136 -10.75841 -10.52251 -10.39570 -10.27082 -10.04818 -9.83452 -9.69790 -9.52810 -9.16495 -9.07951 -8.87582 -8.32885 -7.55391 -6.85698 -5.65836 -3.04288 0.47865 0.91510 2.29302 2.38802 3.09452 3.43556 3.47564 3.48524 3.72470 3.88530 4.12738 4.22773 4.42302 4.49091 4.55494 4.73807 4.83518 5.13464 5.22299 5.24605 5.30312 5.41444 5.46127 5.57984 5.65744 5.75591 5.81050 5.84027 5.96795 6.01392 6.14408 6.17919 6.23696 6.31205 6.35145 6.41681 6.52306 6.59035 6.71572 6.84067 6.92039 6.92897 7.05048 7.23955 7.42457 7.55837 7.63508 7.87775 8.23372 8.26639 8.78426 9.16060 9.79279 10.60495 11.43351 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012918 B = 0.003433 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.945502 B = 8153.806962 C = 9752.594925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.165 3.835 3 N -0.409 5.409 4 C -0.047 4.047 5 C 0.600 3.400 6 O -0.560 6.560 7 N -0.688 5.688 8 C 0.129 3.871 9 H 0.080 0.920 10 C -0.142 4.142 11 C 0.154 3.846 12 H 0.153 0.847 13 C -0.139 4.139 14 C -0.127 4.127 15 C 0.125 3.875 16 H 0.088 0.912 17 N -0.590 5.590 18 C -0.211 4.211 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.921 5.921 22 Si 0.915 3.085 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.068 3.932 27 C -0.061 4.061 28 C -0.123 4.123 29 C -0.133 4.133 30 C 0.047 3.953 31 N -0.364 5.364 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.411 0.589 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.253 0.747 43 H 0.160 0.840 44 H 0.140 0.860 45 H 0.149 0.851 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.173 -20.381 -6.622 21.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.091 4.091 3 N -0.124 5.124 4 C -0.182 4.182 5 C 0.386 3.614 6 O -0.439 6.439 7 N -0.336 5.336 8 C 0.022 3.978 9 H 0.098 0.902 10 C -0.183 4.183 11 C 0.047 3.953 12 H 0.170 0.830 13 C -0.178 4.178 14 C -0.167 4.167 15 C 0.016 3.984 16 H 0.106 0.894 17 N -0.311 5.311 18 C -0.339 4.339 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.745 3.255 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.214 1.214 26 C -0.044 4.044 27 C -0.081 4.081 28 C -0.145 4.145 29 C -0.153 4.153 30 C -0.074 4.074 31 N -0.035 5.035 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.247 0.753 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.177 0.823 44 H 0.158 0.842 45 H 0.167 0.833 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.056 -19.595 -6.431 20.849 hybrid contribution -1.063 -0.341 0.165 1.129 sum -4.120 -19.936 -6.266 21.300 Atomic orbital electron populations 1.20191 0.83935 1.04204 1.03793 1.23380 0.95715 0.78817 1.11228 1.70105 1.01532 1.27270 1.13497 1.20703 0.91701 0.89665 1.16150 1.16486 0.86142 0.82090 0.76707 1.90750 1.23136 1.77013 1.53049 1.45798 1.11444 1.04524 1.71821 1.22666 0.87243 0.89912 0.97944 0.90154 1.23452 0.99049 1.00534 0.95240 1.23757 0.83743 0.90083 0.97714 0.83031 1.23065 0.98545 1.00419 0.95768 1.22866 0.96949 0.99354 0.97502 1.23178 0.93470 0.90061 0.91650 0.89435 1.46526 1.14199 1.62290 1.08060 1.18968 0.90426 1.27035 0.97456 0.90455 1.24677 0.98350 1.01548 0.96032 1.69449 1.34089 1.49534 1.03844 0.86144 0.83235 0.79246 0.76826 1.21234 1.21707 1.21360 1.19273 0.83962 0.94365 1.06822 1.20838 0.99228 0.91153 0.96842 1.21187 0.96523 0.95894 1.00870 1.20877 0.92370 0.99837 1.02263 1.21627 1.01426 0.80404 1.03991 1.42875 1.07953 1.06420 1.46242 0.89982 0.88548 0.90951 0.75343 0.92233 0.92819 0.92671 0.93343 0.92991 0.92480 0.93603 0.82265 0.84200 0.83309 0.81701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.32 36.01 0.37 -0.17 16 2 C 0.17 2.21 7.94 -154.56 -1.23 0.99 16 3 N -0.41 -6.99 10.90 -6.74 -0.07 -7.07 16 4 C -0.05 -0.84 7.05 -82.57 -0.58 -1.43 16 5 C 0.60 11.88 7.77 -13.02 -0.10 11.78 16 6 O -0.56 -11.75 15.40 5.12 0.08 -11.67 16 7 N -0.69 -13.84 5.07 -52.81 -0.27 -14.10 16 8 C 0.13 2.60 2.80 -65.44 -0.18 2.42 16 9 H 0.08 1.60 7.23 -51.93 -0.38 1.22 16 10 C -0.14 -3.09 6.23 -24.24 -0.15 -3.24 16 11 C 0.15 3.64 4.72 -62.80 -0.30 3.34 16 12 H 0.15 4.09 5.52 -51.93 -0.29 3.81 16 13 C -0.14 -2.84 6.44 -24.24 -0.16 -2.99 16 14 C -0.13 -2.40 6.44 -24.23 -0.16 -2.56 16 15 C 0.13 2.59 5.06 -62.80 -0.32 2.27 16 16 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 17 N -0.59 -14.62 2.99 -145.82 -0.44 -15.05 16 18 C -0.21 -5.73 10.59 -15.06 -0.16 -5.89 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.62 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 21 N -0.92 -26.55 10.46 55.49 0.58 -25.97 16 22 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 26 C 0.07 1.02 6.72 -83.99 -0.56 0.46 16 27 C -0.06 -0.77 9.73 -39.54 -0.38 -1.15 16 28 C -0.12 -1.08 10.08 -39.46 -0.40 -1.48 16 29 C -0.13 -0.94 9.98 -39.92 -0.40 -1.34 16 30 C 0.05 0.39 10.77 -16.60 -0.18 0.21 16 31 N -0.36 -4.52 2.94 -57.93 -0.17 -4.69 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.41 7.99 -51.92 -0.41 -0.01 16 35 H 0.41 8.56 8.36 -40.82 -0.34 8.21 16 36 H 0.06 1.42 7.98 -51.93 -0.41 1.00 16 37 H 0.05 1.07 7.82 -51.93 -0.41 0.67 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.05 0.88 7.82 -51.93 -0.41 0.48 16 40 H 0.05 0.87 7.82 -51.93 -0.41 0.46 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.16 2.08 7.17 -52.49 -0.38 1.70 16 44 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.15 0.52 8.06 -52.48 -0.42 0.09 16 46 H 0.17 0.72 7.94 -52.49 -0.42 0.31 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -33.49 375.37 -10.98 -44.47 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -6.35 Total: 10.51 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -4.98 Total: 0.84 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: -0.37 Total: -66.89 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.08 Total: -11.67 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.49 -10.98 -44.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097538679.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.906 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds