Wall clock time and date at job start Sat Apr 11 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30183 * 125.09121 * 2 1 4 4 C 1.34883 * 109.73147 * 179.97438 * 3 2 1 5 5 C 1.46295 * 126.49070 * 180.25801 * 4 3 2 6 6 O 1.21775 * 119.99588 * 179.68575 * 5 4 3 7 7 N 1.34772 * 120.00273 * 359.69442 * 5 4 3 8 8 C 1.46503 * 120.00201 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.55631 * 32.10245 * 8 7 5 10 10 C 1.54845 * 110.62584 * 269.02568 * 8 7 5 11 11 C 1.55847 * 103.44665 * 241.50644 * 10 8 7 12 12 H 1.08996 * 116.12736 * 159.15009 * 11 10 8 13 13 C 1.55836 * 105.06511 * 288.18033 * 11 10 8 14 14 C 1.54854 * 103.45062 * 71.82190 * 13 11 10 15 15 C 1.55840 * 110.62502 * 154.99650 * 8 7 5 16 16 H 1.08993 * 115.56698 * 319.68414 * 15 8 7 17 17 N 1.50239 * 101.04810 * 32.94089 * 11 10 8 18 18 C 1.36942 * 130.83927 * 126.00963 * 17 11 10 19 19 H 1.07998 * 119.99777 * 180.02562 * 18 17 11 20 20 C 1.38814 * 119.99846 * 0.02562 * 18 17 11 21 21 N 1.31613 * 119.99850 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99993 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47325 * 60.00267 * 22 20 18 24 24 H 1.48495 * 109.47494 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47280 * 300.00594 * 22 20 18 26 26 C 1.40145 * 107.01014 * 0.02562 * 4 3 2 27 27 C 1.40179 * 133.57625 * 179.97438 * 26 4 3 28 28 C 1.36335 * 119.19833 * 179.97438 * 27 26 4 29 29 C 1.40387 * 119.55656 * 0.02562 * 28 27 26 30 30 C 1.35023 * 120.44770 * 359.95487 * 29 28 27 31 31 N 1.36254 * 125.08907 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47449 * 270.00118 * 1 2 3 33 33 H 1.09001 * 109.46933 * 30.00608 * 1 2 3 34 34 H 1.09008 * 109.46909 * 150.00310 * 1 2 3 35 35 H 0.97002 * 119.99998 * 359.97438 * 7 5 4 36 36 H 1.08998 * 110.63096 * 0.02562 * 10 8 7 37 37 H 1.09002 * 110.62399 * 123.02229 * 10 8 7 38 38 H 1.09002 * 110.62785 * 190.30851 * 13 11 10 39 39 H 1.09000 * 110.62602 * 313.33226 * 13 11 10 40 40 H 1.08999 * 110.62765 * 241.51526 * 14 13 11 41 41 H 1.08996 * 110.62607 * 118.48508 * 14 13 11 42 42 H 0.96999 * 120.00117 * 179.97438 * 21 20 18 43 43 H 1.07994 * 120.40260 * 0.02562 * 27 26 4 44 44 H 1.07999 * 120.22181 * 180.02562 * 28 27 26 45 45 H 1.08009 * 119.77891 * 179.97438 * 29 28 27 46 46 H 1.07996 * 119.70427 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2554 1.0652 0.0000 4 6 3.5561 0.7079 0.0006 5 6 4.7065 1.6116 0.0061 6 8 5.8367 1.1583 0.0117 7 7 4.5156 2.9457 0.0050 8 6 5.6677 3.8507 0.0110 9 1 6.5055 3.4072 -0.5269 10 6 6.0737 4.2071 1.4622 11 6 5.8824 5.7525 1.5229 12 1 5.7673 6.1832 2.5175 13 6 7.0452 6.3386 0.6668 14 6 6.6392 5.9822 -0.7844 15 6 5.2861 5.2292 -0.6075 16 1 4.6411 5.1887 -1.4852 17 7 4.7183 5.9353 0.5909 18 6 3.5110 6.5545 0.7767 19 1 2.7896 6.5831 -0.0265 20 6 3.2145 7.1451 1.9974 21 7 4.0939 7.1106 2.9760 22 14 1.5681 7.9903 2.2507 23 1 0.4718 7.0085 2.0516 24 1 1.4991 8.5370 3.6296 25 1 1.4243 9.0977 1.2718 26 6 3.5964 -0.6929 0.0003 27 6 4.6394 -1.6296 0.0002 28 6 4.3390 -2.9594 0.0005 29 6 2.9953 -3.3659 0.0004 30 6 2.0033 -2.4498 0.0009 31 7 2.2903 -1.1149 0.0005 32 1 -0.3634 0.0000 1.0277 33 1 -0.3633 0.8899 -0.5139 34 1 -0.3633 -0.8901 -0.5138 35 1 3.6153 3.3068 0.0002 36 1 5.4183 3.7102 2.1774 37 1 7.1149 3.9416 1.6457 38 1 7.1083 7.4194 0.7934 39 1 7.9912 5.8644 0.9282 40 1 7.3837 5.3313 -1.2426 41 1 6.5008 6.8862 -1.3774 42 1 3.8869 7.5237 3.8289 43 1 5.6684 -1.3017 0.0007 44 1 5.1295 -3.6953 0.0009 45 1 2.7532 -4.4185 0.0002 46 1 0.9738 -2.7758 0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097538679.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:16 Heat of formation + Delta-G solvation = 75.861672 kcal Electronic energy + Delta-G solvation = -29651.255511 eV Core-core repulsion = 25735.351437 eV Total energy + Delta-G solvation = -3915.904073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -43.92639 -41.19802 -39.68495 -38.49076 -35.24327 -34.64175 -34.36101 -32.56452 -31.16425 -30.97196 -30.42099 -29.49673 -27.74075 -26.13964 -24.97422 -24.68642 -22.64602 -22.18809 -21.51504 -21.17231 -20.30027 -18.93075 -18.84308 -17.95944 -17.31719 -17.30713 -17.03505 -16.74635 -16.45997 -15.91955 -15.76560 -15.47161 -15.30164 -15.02436 -14.55468 -14.32805 -14.05219 -13.72856 -13.65804 -13.46082 -13.10342 -12.93215 -12.90825 -12.78197 -12.73986 -12.62748 -12.59988 -12.11522 -11.98261 -11.90981 -11.72608 -11.68689 -11.60641 -11.28192 -10.97575 -10.93406 -10.72669 -10.41182 -9.95576 -8.86606 -8.50784 -7.75080 -5.14787 -0.37505 0.06417 1.22156 1.41981 1.47340 1.50519 1.55926 2.25616 2.35015 2.51231 2.58970 3.22677 3.37666 3.42557 3.44817 3.68003 3.76917 3.91021 4.00958 4.07801 4.15307 4.16482 4.26933 4.46259 4.47602 4.51894 4.62818 4.67598 4.68408 4.73563 4.82139 4.82981 4.90064 4.98389 5.08754 5.11712 5.15948 5.18959 5.23892 5.29415 5.37925 5.51147 5.53138 5.61550 5.72820 5.90213 6.11087 6.27614 6.49694 6.77541 7.06731 7.27501 7.72801 8.59048 9.32218 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012918 B = 0.003433 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.945502 B = 8153.806962 C = 9752.594925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.162 3.838 3 N -0.449 5.449 4 C -0.120 4.120 5 C 0.598 3.402 6 O -0.584 6.584 7 N -0.695 5.695 8 C 0.139 3.861 9 H 0.090 0.910 10 C -0.132 4.132 11 C 0.140 3.860 12 H 0.117 0.883 13 C -0.129 4.129 14 C -0.116 4.116 15 C 0.124 3.876 16 H 0.095 0.905 17 N -0.610 5.610 18 C -0.216 4.216 19 H 0.080 0.920 20 C -0.068 4.068 21 N -0.948 5.948 22 Si 0.976 3.024 23 H -0.282 1.282 24 H -0.297 1.297 25 H -0.279 1.279 26 C 0.075 3.925 27 C -0.118 4.118 28 C -0.079 4.079 29 C -0.130 4.130 30 C 0.050 3.950 31 N -0.364 5.364 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.404 0.596 36 H 0.026 0.974 37 H 0.071 0.929 38 H 0.041 0.959 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.246 0.754 43 H 0.141 0.859 44 H 0.175 0.825 45 H 0.201 0.799 46 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.569 -24.315 -8.082 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.096 4.096 3 N -0.165 5.165 4 C -0.251 4.251 5 C 0.387 3.613 6 O -0.466 6.466 7 N -0.342 5.342 8 C 0.033 3.967 9 H 0.108 0.892 10 C -0.172 4.172 11 C 0.034 3.966 12 H 0.134 0.866 13 C -0.169 4.169 14 C -0.155 4.155 15 C 0.017 3.983 16 H 0.113 0.887 17 N -0.332 5.332 18 C -0.345 4.345 19 H 0.098 0.902 20 C -0.260 4.260 21 N -0.598 5.598 22 Si 0.805 3.195 23 H -0.208 1.208 24 H -0.223 1.223 25 H -0.205 1.205 26 C -0.039 4.039 27 C -0.138 4.138 28 C -0.100 4.100 29 C -0.150 4.150 30 C -0.071 4.071 31 N -0.035 5.035 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.130 0.870 35 H 0.239 0.761 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.055 0.945 43 H 0.158 0.842 44 H 0.193 0.807 45 H 0.218 0.782 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -4.434 -23.526 -7.925 25.218 hybrid contribution -0.684 0.510 0.609 1.048 sum -5.118 -23.016 -7.317 24.687 Atomic orbital electron populations 1.20405 0.80598 1.05861 1.04946 1.24190 0.97242 0.78408 1.09795 1.69956 1.01760 1.29745 1.15029 1.20374 0.91491 0.90831 1.22431 1.16832 0.86825 0.82014 0.75664 1.90692 1.24197 1.77298 1.54428 1.45784 1.10809 1.04935 1.72645 1.22529 0.87727 0.89854 0.96621 0.89234 1.23319 0.99280 0.98982 0.95653 1.23602 0.85057 0.91193 0.96757 0.86591 1.22946 0.98268 0.99525 0.96118 1.22807 0.96310 0.99838 0.96571 1.23376 0.94380 0.89879 0.90652 0.88679 1.46712 1.13983 1.62613 1.09856 1.19301 0.91512 1.26239 0.97475 0.90174 1.25441 1.01486 1.03009 0.96064 1.69709 1.35549 1.50691 1.03861 0.85176 0.79726 0.78320 0.76265 1.20802 1.22345 1.20528 1.19451 0.85856 0.93754 1.04842 1.20817 0.98043 0.92717 1.02202 1.21771 0.98835 0.94598 0.94833 1.21544 0.90881 1.02158 1.00389 1.22707 1.04408 0.78420 1.01564 1.43116 1.06642 1.07985 1.45740 0.88926 0.89121 0.87045 0.76137 0.95523 0.91094 0.94011 0.90786 0.89819 0.91989 0.94490 0.84169 0.80722 0.78160 0.76962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.32 71.24 0.74 -0.16 16 2 C 0.16 4.23 7.94 137.83 1.09 5.33 16 3 N -0.45 -16.20 10.90 -175.23 -1.91 -18.11 16 4 C -0.12 -4.59 7.05 41.23 0.29 -4.29 16 5 C 0.60 25.49 7.77 86.34 0.67 26.16 16 6 O -0.58 -26.15 15.40 -4.59 -0.07 -26.22 16 7 N -0.69 -29.83 5.07 -439.19 -2.23 -32.05 16 8 C 0.14 5.80 2.80 46.60 0.13 5.94 16 9 H 0.09 3.58 7.23 -2.39 -0.02 3.56 16 10 C -0.13 -5.99 6.23 32.21 0.20 -5.79 16 11 C 0.14 6.92 4.72 46.23 0.22 7.14 16 12 H 0.12 6.66 5.52 -2.39 -0.01 6.65 16 13 C -0.13 -5.28 6.44 32.21 0.21 -5.07 16 14 C -0.12 -4.25 6.44 32.21 0.21 -4.04 16 15 C 0.12 5.22 5.06 46.23 0.23 5.45 16 16 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 17 N -0.61 -31.27 2.99 -615.25 -1.84 -33.11 16 18 C -0.22 -12.16 10.59 84.03 0.89 -11.27 16 19 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 20 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 21 N -0.95 -57.35 10.46 21.65 0.23 -57.13 16 22 Si 0.98 46.88 29.55 68.60 2.03 48.90 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 26 C 0.08 2.32 6.72 39.23 0.26 2.58 16 27 C -0.12 -2.93 9.73 22.30 0.22 -2.72 16 28 C -0.08 -1.08 10.08 22.35 0.23 -0.85 16 29 C -0.13 -1.08 9.98 22.05 0.22 -0.86 16 30 C 0.05 0.57 10.77 83.22 0.90 1.47 16 31 N -0.36 -8.40 2.94 -337.20 -0.99 -9.39 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.11 0.75 7.99 -2.38 -0.02 0.73 16 35 H 0.40 18.19 8.36 -92.71 -0.78 17.42 16 36 H 0.03 1.34 7.98 -2.39 -0.02 1.32 16 37 H 0.07 2.90 7.82 -2.39 -0.02 2.88 16 38 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.07 2.62 7.82 -2.39 -0.02 2.60 16 40 H 0.08 2.58 7.82 -2.39 -0.02 2.56 16 41 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 43 H 0.14 3.91 7.17 -2.91 -0.02 3.89 16 44 H 0.18 1.17 8.06 -2.91 -0.02 1.14 16 45 H 0.20 -0.28 8.06 -2.91 -0.02 -0.30 16 46 H 0.21 0.35 7.94 -2.91 -0.02 0.33 16 Total: -1.00 -81.24 375.37 2.63 -78.61 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.24 Total: 32.89 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 7.17 Total: 15.59 kcal Atomic # 7 Polarization: -143.05 SS G_CDS: -6.74 Total: -149.78 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.07 Total: -26.22 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.90 kcal Total: -81.24 2.63 -78.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097538679.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.476 kcal (2) G-P(sol) polarization free energy of solvation -81.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds