Wall clock time and date at job start Sat Apr 11 2020 06:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35449 * 125.68652 * 2 1 4 4 N 1.36442 * 107.22080 * 179.97438 * 3 2 1 5 5 C 1.36715 * 132.27102 * 179.97438 * 4 3 2 6 6 C 1.34541 * 120.95706 * 179.73214 * 5 4 3 7 7 C 1.41781 * 120.14548 * 0.52429 * 6 5 4 8 8 C 1.47653 * 120.36948 * 179.75555 * 7 6 5 9 9 O 1.21589 * 119.99759 * 179.72473 * 8 7 6 10 10 N 1.34773 * 120.00191 * 359.72771 * 8 7 6 11 11 C 1.46503 * 119.99950 * 179.97438 * 10 8 7 12 12 H 1.09002 * 110.68239 * 32.01740 * 11 10 8 13 13 C 1.54843 * 110.62664 * 269.02391 * 11 10 8 14 14 C 1.55845 * 103.44906 * 241.50884 * 13 11 10 15 15 H 1.08997 * 116.13180 * 159.15171 * 14 13 11 16 16 C 1.55849 * 105.06286 * 288.18113 * 14 13 11 17 17 C 1.54843 * 103.44996 * 71.81952 * 16 14 13 18 18 C 1.55846 * 110.62642 * 154.99601 * 11 10 8 19 19 H 1.09004 * 115.56333 * 319.68021 * 18 11 10 20 20 N 1.50235 * 101.04642 * 85.55296 * 18 11 10 21 21 C 1.36940 * 130.83944 * 233.98581 * 20 18 11 22 22 H 1.07999 * 119.99997 * 4.75283 * 21 20 18 23 23 C 1.38814 * 120.00137 * 184.75818 * 21 20 18 24 24 N 1.31615 * 119.99831 * 8.96673 * 23 21 20 25 25 Si 1.86802 * 119.99826 * 188.97162 * 23 21 20 26 26 H 1.48494 * 109.47390 * 94.24509 * 25 23 21 27 27 H 1.48506 * 109.46615 * 214.24709 * 25 23 21 28 28 H 1.48498 * 109.46939 * 334.24053 * 25 23 21 29 29 C 1.38437 * 119.25635 * 359.48427 * 7 6 5 30 30 C 1.37193 * 106.96942 * 0.02562 * 4 3 2 31 31 N 1.32655 * 108.06223 * 359.97438 * 30 4 3 32 32 H 1.08998 * 109.47146 * 90.00214 * 1 2 3 33 33 H 1.09005 * 109.47258 * 210.00224 * 1 2 3 34 34 H 1.09004 * 109.47731 * 330.00504 * 1 2 3 35 35 H 1.07997 * 126.39318 * 359.97438 * 3 2 1 36 36 H 1.08003 * 119.52179 * 359.97438 * 5 4 3 37 37 H 1.07999 * 119.93123 * 180.26517 * 6 5 4 38 38 H 0.96996 * 120.00317 * 359.97438 * 10 8 7 39 39 H 1.08995 * 110.63062 * 0.02562 * 13 11 10 40 40 H 1.09009 * 110.62787 * 123.02502 * 13 11 10 41 41 H 1.09000 * 110.62309 * 190.31089 * 16 14 13 42 42 H 1.08999 * 110.62503 * 313.16594 * 16 14 13 43 43 H 1.08998 * 110.62707 * 241.51122 * 17 16 14 44 44 H 1.09007 * 110.62944 * 118.48813 * 17 16 14 45 45 H 0.97006 * 119.99731 * 180.02562 * 24 23 21 46 46 H 1.07994 * 120.45959 * 180.22594 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2971 1.1001 0.0000 4 7 3.5913 0.6680 0.0006 5 6 4.7840 1.3363 0.0004 6 6 5.9517 0.6681 0.0065 7 6 5.9608 -0.7497 0.0021 8 6 7.2395 -1.4880 0.0033 9 8 7.2394 -2.7039 0.0045 10 7 8.4067 -0.8142 0.0031 11 6 9.6754 -1.5468 0.0049 12 1 9.5767 -2.4889 -0.5345 13 6 10.1592 -1.7963 1.4545 14 6 11.5225 -1.0437 1.5162 15 1 11.8808 -0.7802 2.5113 16 6 12.4981 -1.9020 0.6557 17 6 12.0143 -1.6525 -0.7939 18 6 10.8122 -0.6775 -0.6121 19 1 10.5333 -0.0908 -1.4874 20 7 11.2577 0.1081 0.5886 21 6 11.3833 1.4583 0.7790 22 1 11.0682 2.1442 0.0066 23 6 11.9158 1.9454 1.9648 24 7 12.4611 1.1174 2.8304 25 14 11.8583 3.7761 2.3319 26 1 10.6524 4.0807 3.1431 27 1 13.0753 4.1678 3.0876 28 1 11.8019 4.5351 1.0568 29 6 4.7574 -1.4340 0.0023 30 6 3.5555 -0.7035 0.0003 31 7 2.2840 -1.0817 0.0002 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3635 0.8900 0.5138 35 1 1.9648 2.1277 -0.0004 36 1 4.7888 2.4163 -0.0008 37 1 6.8842 1.2128 0.0106 38 1 8.4068 0.1557 0.0018 39 1 9.4551 -1.3754 2.1722 40 1 10.3006 -2.8621 1.6341 41 1 13.5249 -1.5588 0.7822 42 1 12.4125 -2.9571 0.9155 43 1 11.6867 -2.5842 -1.2551 44 1 12.8012 -1.1856 -1.3864 45 1 12.8329 1.4578 3.6593 46 1 4.7416 -2.5138 0.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097849357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:22 Heat of formation + Delta-G solvation = 100.807421 kcal Electronic energy + Delta-G solvation = -29179.719565 eV Core-core repulsion = 25264.897220 eV Total energy + Delta-G solvation = -3914.822345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.03297 -40.01147 -38.69142 -37.17342 -33.99863 -33.77381 -32.60771 -31.93920 -29.46032 -29.18911 -29.05698 -28.28448 -27.16130 -24.41311 -23.96080 -23.25005 -21.65904 -20.83916 -20.10663 -19.81736 -18.76933 -18.05513 -17.60837 -17.05548 -16.54293 -16.21836 -15.72575 -15.02231 -14.82935 -14.78573 -14.52805 -14.20676 -13.96135 -13.56854 -13.48937 -13.43886 -13.29348 -12.89294 -12.53482 -12.12951 -12.00469 -11.91463 -11.65580 -11.37423 -11.20182 -11.03787 -11.00430 -10.95873 -10.56924 -10.40388 -10.33064 -10.15350 -10.01823 -9.91433 -9.39058 -9.20731 -8.96421 -8.93193 -8.62016 -8.04267 -7.01600 -5.83932 -3.20534 0.33950 0.87319 2.34552 2.48390 2.88300 3.29259 3.29673 3.34319 3.38067 3.62466 4.00768 4.18948 4.33759 4.40656 4.65009 4.81468 4.94701 4.98297 5.06556 5.17538 5.27117 5.37405 5.43494 5.49652 5.58699 5.63261 5.67783 5.78328 5.82995 5.88474 6.00429 6.04429 6.10623 6.18102 6.23090 6.36999 6.38071 6.43122 6.55570 6.69322 6.77277 6.79455 6.90349 7.03253 7.26669 7.40483 7.63194 7.71781 7.83833 8.07073 8.43244 8.98030 9.62585 10.44818 11.26801 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013729 B = 0.002965 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.920690 B = 9440.248976 C =10999.528189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.056 3.944 3 C -0.095 4.095 4 N -0.352 5.352 5 C 0.048 3.952 6 C -0.113 4.113 7 C -0.115 4.115 8 C 0.558 3.442 9 O -0.542 6.542 10 N -0.696 5.696 11 C 0.129 3.871 12 H 0.084 0.916 13 C -0.145 4.145 14 C 0.156 3.844 15 H 0.147 0.853 16 C -0.136 4.136 17 C -0.128 4.128 18 C 0.125 3.875 19 H 0.088 0.912 20 N -0.590 5.590 21 C -0.219 4.219 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.915 5.915 25 Si 0.912 3.088 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.008 4.008 30 C 0.213 3.787 31 N -0.480 5.480 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.183 0.817 36 H 0.169 0.831 37 H 0.159 0.841 38 H 0.402 0.598 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.254 0.746 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.992 0.439 -6.265 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 C -0.227 4.227 4 N -0.024 5.024 5 C -0.073 4.073 6 C -0.134 4.134 7 C -0.124 4.124 8 C 0.344 3.656 9 O -0.421 6.421 10 N -0.345 5.345 11 C 0.023 3.977 12 H 0.102 0.898 13 C -0.185 4.185 14 C 0.050 3.950 15 H 0.164 0.836 16 C -0.176 4.176 17 C -0.168 4.168 18 C 0.016 3.984 19 H 0.106 0.894 20 N -0.311 5.311 21 C -0.347 4.347 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.562 5.562 25 Si 0.743 3.257 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 C -0.029 4.029 30 C -0.028 4.028 31 N -0.201 5.201 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.201 0.799 36 H 0.186 0.814 37 H 0.176 0.824 38 H 0.238 0.762 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -16.133 -0.878 -6.091 17.266 hybrid contribution 0.395 2.416 0.230 2.459 sum -15.738 1.538 -5.860 16.864 Atomic orbital electron populations 1.20140 0.86744 1.03243 1.02784 1.20984 0.96950 0.87907 1.02027 1.22498 0.80779 1.01191 1.18249 1.42804 1.06196 1.08850 1.44528 1.21464 0.82590 0.98839 1.04445 1.20958 0.97982 0.93486 1.00967 1.20088 0.94084 0.93321 1.04896 1.17850 0.83387 0.87121 0.77286 1.90775 1.87475 1.13134 1.50718 1.45919 1.05310 1.10685 1.72592 1.22717 0.81927 0.95042 0.98056 0.89836 1.23471 1.00663 0.99254 0.95160 1.23596 0.89812 0.84035 0.97571 0.83630 1.23033 1.00746 0.98298 0.95483 1.22865 0.98352 0.97961 0.97587 1.23177 0.92155 0.91589 0.91481 0.89365 1.46563 1.75707 1.01159 1.07706 1.18986 1.35031 0.79922 1.00727 0.90389 1.24716 1.00332 0.97748 0.97643 1.69590 1.42911 1.32739 1.10932 0.86100 0.77202 0.84509 0.77909 1.21731 1.21777 1.20715 1.20671 0.86455 1.01269 0.94534 1.20747 0.94256 0.80342 1.07494 1.70581 0.98054 1.29440 1.22058 0.90744 0.90612 0.90793 0.79950 0.81366 0.82402 0.76188 0.92244 0.92503 0.92425 0.93361 0.92971 0.92393 0.93516 0.81784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.42 36.00 0.38 -0.15 16 2 C 0.06 0.63 7.06 -83.00 -0.59 0.05 16 3 C -0.09 -0.95 11.64 -16.50 -0.19 -1.14 16 4 N -0.35 -4.13 2.94 -62.75 -0.18 -4.31 16 5 C 0.05 0.47 10.91 -16.68 -0.18 0.28 16 6 C -0.11 -1.23 9.48 -39.54 -0.37 -1.61 16 7 C -0.11 -1.56 5.90 -104.63 -0.62 -2.18 16 8 C 0.56 9.01 7.77 -12.42 -0.10 8.91 16 9 O -0.54 -10.38 16.01 5.29 0.08 -10.29 16 10 N -0.70 -11.09 5.03 -52.40 -0.26 -11.35 16 11 C 0.13 2.26 2.80 -65.44 -0.18 2.08 16 12 H 0.08 1.48 7.23 -51.93 -0.38 1.11 16 13 C -0.15 -2.82 6.23 -24.24 -0.15 -2.97 16 14 C 0.16 3.41 4.69 -62.80 -0.29 3.12 16 15 H 0.15 3.68 5.69 -51.93 -0.30 3.38 16 16 C -0.14 -2.63 6.44 -24.24 -0.16 -2.78 16 17 C -0.13 -2.24 6.44 -24.24 -0.16 -2.40 16 18 C 0.12 2.29 5.06 -62.80 -0.32 1.97 16 19 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 20 N -0.59 -13.25 2.98 -145.81 -0.44 -13.68 16 21 C -0.22 -5.43 10.56 -15.06 -0.16 -5.59 16 22 H 0.08 1.85 7.84 -52.49 -0.41 1.44 16 23 C -0.01 -0.20 5.47 -17.43 -0.10 -0.30 16 24 N -0.91 -24.91 10.61 55.49 0.59 -24.32 16 25 Si 0.91 20.51 29.56 -169.99 -5.03 15.48 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 29 C -0.01 -0.11 9.70 -38.60 -0.37 -0.49 16 30 C 0.21 2.98 7.79 -155.96 -1.22 1.77 16 31 N -0.48 -6.92 11.31 -9.02 -0.10 -7.02 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.16 1.47 6.46 -52.49 -0.34 1.13 16 38 H 0.40 5.95 6.72 -40.82 -0.27 5.68 16 39 H 0.06 1.23 7.98 -51.93 -0.41 0.82 16 40 H 0.06 1.04 7.82 -51.92 -0.41 0.63 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.05 0.83 7.82 -51.93 -0.41 0.43 16 43 H 0.05 0.80 7.82 -51.93 -0.41 0.40 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 46 H 0.16 2.28 7.67 -52.49 -0.40 1.88 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -31.49 374.46 -10.72 -42.21 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.25 Total: 9.06 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -4.78 Total: -1.41 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -0.40 Total: -60.69 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.49 -10.72 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097849357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.013 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds