Wall clock time and date at job start Sat Apr 11 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30369 * 125.96725 * 2 1 4 4 N 1.39928 * 109.02157 * 180.28628 * 3 2 1 5 5 C 1.46493 * 125.74289 * 179.71330 * 4 3 2 6 6 C 1.34413 * 108.50813 * 359.71837 * 4 3 2 7 7 F 1.35108 * 126.33829 * 180.02562 * 6 4 3 8 8 C 1.38497 * 107.31596 * 359.97438 * 6 4 3 9 9 C 1.47168 * 126.45673 * 180.02562 * 8 6 4 10 10 O 1.21632 * 120.00511 * 90.02146 * 9 8 6 11 11 N 1.34785 * 119.99989 * 270.02038 * 9 8 6 12 12 C 1.46498 * 120.00193 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.46943 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.55473 * 304.87446 * 13 12 11 15 15 C 1.53290 * 109.50941 * 184.74671 * 13 12 11 16 16 N 1.47170 * 108.41499 * 187.79524 * 15 13 12 17 17 C 1.36935 * 120.99701 * 230.54825 * 16 15 13 18 18 H 1.07992 * 120.00220 * 153.32579 * 17 16 15 19 19 C 1.38816 * 119.99598 * 333.33422 * 17 16 15 20 20 N 1.31616 * 120.00208 * 343.52376 * 19 17 16 21 21 Si 1.86797 * 119.99898 * 163.52863 * 19 17 16 22 22 H 1.48504 * 109.47120 * 89.99889 * 21 19 17 23 23 H 1.48504 * 109.47291 * 209.99333 * 21 19 17 24 24 H 1.48497 * 109.47353 * 329.99349 * 21 19 17 25 25 C 1.47156 * 118.02451 * 50.46879 * 16 15 13 26 26 C 1.53294 * 108.41770 * 309.53478 * 25 16 15 27 27 O 1.42961 * 109.22381 * 52.27835 * 26 25 16 28 28 H 1.09008 * 109.46518 * 270.18874 * 1 2 3 29 29 H 1.09002 * 109.47242 * 30.18267 * 1 2 3 30 30 H 1.08994 * 109.47895 * 150.18993 * 1 2 3 31 31 H 1.09000 * 109.47408 * 270.00177 * 5 4 3 32 32 H 1.09004 * 109.47286 * 30.00439 * 5 4 3 33 33 H 1.09001 * 109.47109 * 150.00482 * 5 4 3 34 34 H 0.96997 * 119.99320 * 0.02562 * 11 9 8 35 35 H 1.09003 * 109.46963 * 60.00123 * 12 11 9 36 36 H 1.08999 * 109.47164 * 300.00130 * 12 11 9 37 37 H 1.09004 * 109.46863 * 180.13027 * 14 13 12 38 38 H 1.08999 * 109.47377 * 300.12547 * 14 13 12 39 39 H 1.08996 * 109.46812 * 60.13062 * 14 13 12 40 40 H 1.09000 * 109.68636 * 307.49976 * 15 13 12 41 41 H 1.09007 * 109.68606 * 68.05506 * 15 13 12 42 42 H 0.96998 * 120.00577 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.68193 * 189.78958 * 25 16 15 44 44 H 1.09002 * 109.67597 * 69.27168 * 25 16 15 45 45 H 1.08994 * 109.51442 * 172.20976 * 26 25 16 46 46 H 1.09006 * 109.50925 * 292.30722 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0551 0.0000 4 7 3.6112 0.6473 -0.0066 5 6 4.7763 1.5353 -0.0147 6 6 3.6478 -0.6963 -0.0044 7 9 4.7576 -1.4669 -0.0087 8 6 2.3374 -1.1444 0.0041 9 6 1.8930 -2.5474 0.0098 10 8 1.7150 -3.1248 1.0654 11 7 1.6831 -3.1926 -1.1549 12 6 1.2412 -4.5893 -1.1493 13 6 1.0799 -5.0789 -2.5898 14 6 0.1312 -4.1456 -3.3447 15 6 0.5050 -6.4999 -2.5862 16 7 0.5352 -7.0171 -3.9637 17 6 -0.5799 -7.5711 -4.5336 18 1 -0.7046 -7.5516 -5.6061 19 6 -1.5502 -8.1576 -3.7325 20 7 -1.2706 -8.4757 -2.4864 21 14 -3.2525 -8.4956 -4.4234 22 1 -3.2821 -9.8532 -5.0245 23 1 -4.2549 -8.4162 -3.3306 24 1 -3.5738 -7.4862 -5.4641 25 6 1.7990 -6.9197 -4.7112 26 6 2.3110 -5.4783 -4.6112 27 8 2.3549 -5.0886 -3.2364 28 1 -0.3633 0.0034 1.0278 29 1 -0.3634 0.8883 -0.5167 30 1 -0.3635 -0.8916 -0.5108 31 1 5.0596 1.7537 -1.0443 32 1 4.5286 2.4643 0.4989 33 1 5.6076 1.0486 0.4954 34 1 1.8254 -2.7322 -1.9967 35 1 0.2860 -4.6661 -0.6299 36 1 1.9830 -5.2030 -0.6383 37 1 0.0154 -4.4969 -4.3700 38 1 -0.8407 -4.1386 -2.8512 39 1 0.5429 -3.1364 -3.3507 40 1 1.1087 -7.1386 -1.9415 41 1 -0.5231 -6.4791 -2.2244 42 1 -1.9484 -8.8858 -1.9267 43 1 1.6279 -7.1769 -5.7565 44 1 2.5333 -7.6008 -4.2810 45 1 3.3114 -5.4167 -5.0393 46 1 1.6400 -4.8149 -5.1571 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108371343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:37 Heat of formation + Delta-G solvation = -13.263269 kcal Electronic energy + Delta-G solvation = -30700.422484 eV Core-core repulsion = 26349.884438 eV Total energy + Delta-G solvation = -4350.538046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.52300 -41.60887 -39.55899 -38.55668 -34.89892 -34.46774 -34.31236 -31.81104 -31.25751 -30.57899 -29.72931 -27.94959 -26.87884 -26.20652 -25.31445 -23.23610 -22.65073 -21.22929 -20.89207 -20.17338 -18.79061 -18.14012 -17.18490 -17.13827 -16.79915 -16.30177 -15.87919 -15.49438 -15.10788 -14.96654 -14.56308 -14.42262 -14.23545 -13.98290 -13.87653 -13.70832 -13.58442 -13.49203 -13.09335 -12.91864 -12.71945 -12.66370 -12.40717 -12.38563 -11.90604 -11.58340 -11.19220 -11.13900 -11.01537 -10.82144 -10.66160 -10.31851 -10.26320 -10.06309 -9.88089 -9.62248 -9.53373 -9.04689 -8.95740 -8.81864 -8.54127 -6.73539 -5.84840 -3.28484 1.10895 1.62695 2.02416 2.61579 3.32995 3.39733 3.41585 3.42385 3.59194 4.07249 4.26299 4.43469 4.48382 4.65296 4.79320 4.92664 4.94693 5.05406 5.16386 5.34090 5.39078 5.47786 5.50168 5.51996 5.59816 5.68394 5.92089 5.94183 6.02240 6.07365 6.12115 6.14646 6.31513 6.39423 6.46201 6.57980 6.68673 6.76199 6.82767 7.07409 7.08732 7.46878 7.67644 7.70521 7.89095 8.32684 8.35403 9.10581 9.73570 10.31096 11.23208 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.002827 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.116851 B = 9902.265995 C =10511.384408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.134 3.866 3 N -0.273 5.273 4 N -0.376 5.376 5 C 0.093 3.907 6 C 0.294 3.706 7 F -0.087 7.087 8 C -0.285 4.285 9 C 0.593 3.407 10 O -0.532 6.532 11 N -0.706 5.706 12 C 0.138 3.862 13 C 0.078 3.922 14 C -0.162 4.162 15 C 0.160 3.840 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.067 0.933 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.384 6.384 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.403 0.597 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.030 0.970 41 H 0.097 0.903 42 H 0.256 0.744 43 H 0.061 0.939 44 H 0.025 0.975 45 H 0.079 0.921 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.105 19.971 2.361 22.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 N -0.096 5.096 4 N -0.161 5.161 5 C -0.047 4.047 6 C 0.147 3.853 7 F -0.066 7.066 8 C -0.301 4.301 9 C 0.376 3.624 10 O -0.408 6.408 11 N -0.357 5.357 12 C 0.015 3.985 13 C 0.037 3.963 14 C -0.219 4.219 15 C 0.034 3.966 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.214 1.214 24 H -0.205 1.205 25 C -0.017 4.017 26 C -0.032 4.032 27 O -0.304 6.304 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.238 0.762 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.115 0.885 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.097 0.903 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.235 20.799 3.319 22.998 hybrid contribution -0.421 -1.130 -0.881 1.493 sum 8.814 19.669 2.438 21.691 Atomic orbital electron populations 1.20347 0.85048 1.04251 1.04160 1.22221 0.97250 0.87968 0.95864 1.77301 0.84101 1.21169 1.27015 1.48658 1.07300 1.02584 1.57585 1.22060 0.83675 0.94651 1.04346 1.17794 0.83431 0.81797 1.02292 1.91679 1.49623 1.71533 1.93744 1.19763 0.90317 0.95847 1.24218 1.17003 0.77432 0.83854 0.84093 1.90812 1.51309 1.67574 1.31135 1.46032 1.67736 1.13774 1.08159 1.21408 1.00948 0.80329 0.95845 1.22556 0.84355 0.99125 0.90287 1.22204 0.99507 0.97470 1.02751 1.21289 1.01623 0.87002 0.86708 1.43993 1.06393 1.69120 1.11919 1.19132 0.96184 1.31206 0.91849 0.91495 1.25046 0.99731 0.98047 0.96660 1.70005 1.33113 1.43933 1.07453 0.86306 0.84271 0.78189 0.78054 1.21362 1.21445 1.20472 1.21595 0.89523 0.93793 0.96805 1.23031 1.00156 0.97160 0.82847 1.87831 1.29310 1.89006 1.24206 0.89372 0.89875 0.89618 0.89777 0.88169 0.89030 0.76186 0.89685 0.90661 0.90799 0.91754 0.93959 0.95223 0.88527 0.93404 0.92084 0.95663 0.90255 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.28 36.00 0.37 -0.35 16 2 C 0.13 1.59 7.26 -82.01 -0.60 0.99 16 3 N -0.27 -3.19 12.49 33.90 0.42 -2.76 16 4 N -0.38 -3.93 3.98 -67.94 -0.27 -4.20 16 5 C 0.09 0.52 11.43 59.84 0.68 1.20 16 6 C 0.29 3.65 8.70 -16.33 -0.14 3.51 16 7 F -0.09 -1.07 17.31 2.25 0.04 -1.03 16 8 C -0.29 -3.88 5.89 -104.97 -0.62 -4.50 16 9 C 0.59 9.40 7.35 -12.63 -0.09 9.31 16 10 O -0.53 -10.35 17.11 5.25 0.09 -10.26 16 11 N -0.71 -10.52 5.19 -61.46 -0.32 -10.84 16 12 C 0.14 2.36 4.85 -4.04 -0.02 2.34 16 13 C 0.08 1.43 0.78 -90.47 -0.07 1.36 16 14 C -0.16 -2.69 7.86 37.16 0.29 -2.40 16 15 C 0.16 3.69 4.11 -3.53 -0.01 3.67 16 16 N -0.59 -14.23 2.57 -171.81 -0.44 -14.67 16 17 C -0.25 -6.69 9.65 -15.06 -0.15 -6.84 16 18 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 19 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 20 N -0.90 -25.40 11.14 55.49 0.62 -24.79 16 21 Si 0.90 21.03 29.58 -169.99 -5.03 16.00 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.11 2.23 6.73 -3.53 -0.02 2.20 16 26 C 0.05 0.79 6.60 37.31 0.25 1.04 16 27 O -0.38 -7.09 10.17 -35.23 -0.36 -7.45 16 28 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.78 8.01 -51.93 -0.42 0.37 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.40 5.42 6.99 -40.82 -0.29 5.13 16 35 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.07 1.35 6.12 -51.93 -0.32 1.04 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.04 0.59 6.59 -51.93 -0.34 0.24 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 2.44 6.16 -51.93 -0.32 2.12 16 42 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.05 0.79 6.26 -51.93 -0.32 0.47 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -32.72 381.13 -6.34 -39.06 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.62 Total: 3.63 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -0.22 Total: 11.56 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.01 Total: -57.26 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.27 Total: -17.71 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.72 -6.34 -39.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108371343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.797 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds