Wall clock time and date at job start Sat Apr 11 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35314 * 126.12508 * 2 1 4 4 C 1.39875 * 107.92022 * 180.14864 * 3 2 1 5 5 C 1.50696 * 125.90035 * 179.86492 * 4 3 2 6 6 N 1.46906 * 109.47351 * 94.70999 * 5 4 3 7 7 C 1.46901 * 110.99793 * 293.95574 * 6 5 4 8 8 C 1.46898 * 110.99820 * 169.99890 * 6 5 4 9 9 H 1.08994 * 109.47410 * 309.99936 * 8 6 5 10 10 C 1.53001 * 109.46948 * 70.00145 * 8 6 5 11 11 C 1.53004 * 109.46619 * 189.99887 * 8 6 5 12 12 N 1.46498 * 109.47157 * 55.00517 * 11 8 6 13 13 C 1.34778 * 120.00164 * 179.97438 * 12 11 8 14 14 O 1.21284 * 119.99701 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00096 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47074 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00006 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99748 * 0.02562 * 17 16 15 19 19 C 1.38794 * 119.99750 * 180.02562 * 17 16 15 20 20 N 1.31634 * 120.00400 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99960 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46631 * 60.00183 * 21 19 17 23 23 H 1.48502 * 109.47282 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47284 * 300.00398 * 21 19 17 25 25 N 1.30837 * 108.19888 * 359.59213 * 4 3 2 26 26 N 1.34943 * 126.12725 * 179.70138 * 2 1 3 27 27 C 1.46507 * 126.03866 * 0.02562 * 26 2 1 28 28 H 1.09005 * 109.47527 * 270.29419 * 1 2 3 29 29 H 1.08999 * 109.47113 * 30.29788 * 1 2 3 30 30 H 1.09001 * 109.47192 * 150.29707 * 1 2 3 31 31 H 1.08001 * 126.04418 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.47055 * 334.71055 * 5 4 3 33 33 H 1.09001 * 109.47156 * 214.70823 * 5 4 3 34 34 H 1.09002 * 109.47401 * 59.99808 * 7 6 5 35 35 H 1.09001 * 109.46874 * 299.99821 * 7 6 5 36 36 H 1.09004 * 109.46970 * 179.97438 * 7 6 5 37 37 H 1.08991 * 109.47344 * 299.99707 * 10 8 6 38 38 H 1.09002 * 109.47146 * 59.99940 * 10 8 6 39 39 H 1.09007 * 109.46628 * 179.97438 * 10 8 6 40 40 H 1.09005 * 109.46617 * 175.00154 * 11 8 6 41 41 H 1.09001 * 109.47284 * 294.99815 * 11 8 6 42 42 H 0.97005 * 119.99841 * 359.97438 * 12 11 8 43 43 H 1.08995 * 109.47152 * 299.99466 * 15 13 12 44 44 H 1.09004 * 109.47188 * 60.00083 * 15 13 12 45 45 H 0.97005 * 119.99999 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.47023 * 270.02325 * 27 26 2 47 47 H 1.09001 * 109.46759 * 30.02225 * 27 26 2 48 48 H 1.08998 * 109.47094 * 150.01920 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6335 0.6560 -0.0035 5 6 4.8542 1.5395 -0.0075 6 7 5.3215 1.7355 1.3713 7 6 4.3411 2.4977 2.1561 8 6 6.6367 2.3896 1.3935 9 1 7.3146 1.8654 0.7200 10 6 6.4907 3.8436 0.9403 11 6 7.2006 2.3527 2.8153 12 7 7.2287 0.9683 3.2937 13 6 7.6905 0.6915 4.5293 14 8 8.0833 1.5885 5.2449 15 6 7.7188 -0.7325 5.0216 16 16 8.3875 -0.7763 6.7030 17 6 8.3078 -2.5079 7.0189 18 1 7.9254 -3.1777 6.2629 19 6 8.7364 -3.0111 8.2394 20 7 9.2020 -2.1947 9.1610 21 14 8.6513 -4.8468 8.5747 22 1 9.4794 -5.5710 7.5771 23 1 9.1654 -5.1251 9.9398 24 1 7.2420 -5.3037 8.4732 25 7 3.6333 -0.6524 0.0034 26 7 2.3026 -1.0899 0.0057 27 6 1.8539 -2.4846 0.0124 28 1 -0.3634 0.0053 1.0277 29 1 -0.3633 0.8873 -0.5184 30 1 -0.3634 -0.8926 -0.5092 31 1 1.9740 2.1211 0.0004 32 1 4.6025 2.5049 -0.4465 33 1 5.6422 1.0678 -0.5946 34 1 3.3956 1.9559 2.1812 35 1 4.1883 3.4742 1.6967 36 1 4.7119 2.6280 3.1729 37 1 6.0889 3.8700 -0.0725 38 1 5.8128 4.3679 1.6139 39 1 7.4666 4.3291 0.9572 40 1 8.2127 2.7577 2.8153 41 1 6.5697 2.9515 3.4722 42 1 6.9149 0.2509 2.7212 43 1 6.7067 -1.1369 5.0222 44 1 8.3492 -1.3316 4.3646 45 1 9.5019 -2.5465 10.0139 46 1 1.7418 -2.8252 1.0417 47 1 0.8958 -2.5604 -0.5017 48 1 2.5902 -3.1056 -0.4978 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275773383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:11 Heat of formation + Delta-G solvation = 45.283420 kcal Electronic energy + Delta-G solvation = -26939.925096 eV Core-core repulsion = 23158.139001 eV Total energy + Delta-G solvation = -3781.786095 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.53616 -39.43644 -38.21052 -34.63991 -33.49153 -32.35818 -32.28871 -31.28813 -29.19994 -28.58349 -27.36713 -26.48071 -25.97243 -25.33173 -24.10123 -20.67306 -20.22209 -19.99561 -19.38208 -17.71162 -16.86916 -16.74155 -16.10227 -16.00722 -15.80821 -15.02169 -14.82260 -14.73976 -14.69060 -14.30583 -13.93926 -13.78943 -13.58757 -13.48987 -13.17615 -13.01456 -12.79589 -12.76364 -12.62675 -12.52264 -12.43066 -12.19529 -12.13429 -11.79978 -11.59790 -11.38093 -11.00172 -10.98019 -10.96460 -10.70559 -10.65736 -9.74476 -9.37064 -9.23662 -8.99430 -8.74273 -8.64050 -8.49124 -8.14221 -6.40929 -6.14620 -3.84041 1.62298 2.24593 2.45928 3.16549 3.27650 3.29314 3.32053 3.39101 3.75084 3.97498 4.18009 4.27706 4.29657 4.58636 4.60864 4.66663 4.81765 4.85072 4.94599 5.03341 5.06159 5.11181 5.12906 5.20102 5.29639 5.32663 5.37244 5.40853 5.41412 5.44820 5.48589 5.59686 5.67841 5.76075 5.87831 5.89487 5.93246 6.02934 6.05726 6.29293 6.39946 6.75336 6.76485 6.79863 6.93164 7.55551 7.66422 7.99617 8.42423 8.82469 9.30474 10.92788 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009992 B = 0.002563 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.539015 B =10922.577489 C =13179.911034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.079 3.921 3 C -0.269 4.269 4 C 0.084 3.916 5 C 0.136 3.864 6 N -0.526 5.526 7 C 0.019 3.981 8 C 0.069 3.931 9 H 0.091 0.909 10 C -0.185 4.185 11 C 0.132 3.868 12 N -0.725 5.725 13 C 0.530 3.470 14 O -0.526 6.526 15 C -0.151 4.151 16 S -0.062 6.062 17 C -0.534 4.534 18 H 0.071 0.929 19 C 0.073 3.927 20 N -0.869 5.869 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 N -0.273 5.273 26 N -0.374 5.374 27 C 0.100 3.900 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.142 0.858 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.405 0.595 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.268 0.732 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.688 7.632 -25.022 31.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.048 4.048 3 C -0.299 4.299 4 C -0.083 4.083 5 C 0.006 3.994 6 N -0.250 5.250 7 C -0.129 4.129 8 C -0.040 4.040 9 H 0.109 0.891 10 C -0.244 4.244 11 C 0.007 3.993 12 N -0.380 5.380 13 C 0.316 3.684 14 O -0.402 6.402 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.682 4.682 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.744 3.256 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.200 1.200 25 N -0.095 5.095 26 N -0.156 5.156 27 C -0.042 4.042 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.160 0.840 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.240 0.760 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.103 0.897 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.244 7.465 -23.423 29.466 hybrid contribution -1.377 -1.148 -1.220 2.168 sum -17.622 6.317 -24.643 30.947 Atomic orbital electron populations 1.20446 0.87500 1.03638 1.03411 1.21056 0.94589 0.87417 1.01747 1.21076 0.91792 0.98780 1.18233 1.21980 0.94937 0.91566 0.99832 1.20351 0.92790 0.95896 0.90324 1.62060 1.02479 1.49199 1.11281 1.22495 0.96167 0.95848 0.98421 1.22019 0.90900 0.93709 0.97359 0.89093 1.22400 1.03196 0.97211 1.01582 1.21274 1.00646 0.84496 0.92842 1.45825 1.66655 1.08853 1.16637 1.20261 0.76399 0.90902 0.80791 1.90684 1.46284 1.47854 1.55352 1.23502 1.05292 0.95317 1.06033 1.85339 1.81775 1.10346 1.06072 1.22842 1.49295 0.92426 1.03629 0.91041 1.24983 0.94634 0.98940 0.95058 1.70018 1.39716 1.34865 1.05824 0.86238 0.78572 0.83265 0.77498 1.19963 1.20854 1.19989 1.77405 0.95856 1.12418 1.23863 1.48476 1.03935 1.05983 1.57240 1.21845 1.00789 0.77931 1.03598 0.90130 0.89728 0.91260 0.83982 0.92582 0.89372 0.91146 0.95035 0.90904 0.92117 0.91664 0.91412 0.91267 0.91774 0.75954 0.89385 0.89395 0.92219 0.90545 0.89732 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 10.12 36.00 0.36 -0.08 16 2 C 0.08 0.69 6.93 -82.27 -0.57 0.12 16 3 C -0.27 -2.52 9.64 -40.01 -0.39 -2.91 16 4 C 0.08 0.91 5.93 -82.41 -0.49 0.42 16 5 C 0.14 1.20 5.10 -4.97 -0.03 1.18 16 6 N -0.53 -5.13 4.14 -236.33 -0.98 -6.11 16 7 C 0.02 0.18 8.44 60.07 0.51 0.69 16 8 C 0.07 0.62 2.47 -67.71 -0.17 0.45 16 9 H 0.09 0.77 7.93 -51.93 -0.41 0.36 16 10 C -0.18 -1.31 8.44 37.16 0.31 -1.00 16 11 C 0.13 1.64 4.85 -4.04 -0.02 1.62 16 12 N -0.73 -10.88 5.39 -60.29 -0.32 -11.20 16 13 C 0.53 10.65 7.85 -10.99 -0.09 10.57 16 14 O -0.53 -12.57 15.86 5.55 0.09 -12.48 16 15 C -0.15 -3.28 6.16 36.00 0.22 -3.05 16 16 S -0.06 -1.75 20.57 -107.50 -2.21 -3.96 16 17 C -0.53 -15.72 9.50 30.94 0.29 -15.43 16 18 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 19 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 20 N -0.87 -26.81 13.22 55.49 0.73 -26.08 16 21 Si 0.92 21.96 29.55 -169.99 -5.02 16.94 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 N -0.27 -3.43 12.58 33.67 0.42 -3.01 16 26 N -0.37 -3.77 4.01 -63.88 -0.26 -4.02 16 27 C 0.10 0.63 11.27 59.85 0.67 1.31 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.24 7.08 -51.93 -0.37 -0.13 16 31 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.06 0.41 7.06 -51.93 -0.37 0.04 16 33 H 0.09 0.76 7.93 -51.93 -0.41 0.35 16 34 H 0.07 0.74 6.54 -51.93 -0.34 0.40 16 35 H 0.03 0.25 6.46 -51.93 -0.34 -0.08 16 36 H 0.07 0.81 6.41 -51.93 -0.33 0.48 16 37 H 0.06 0.37 6.91 -51.93 -0.36 0.01 16 38 H 0.06 0.48 6.42 -51.93 -0.33 0.15 16 39 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.86 6.71 -51.93 -0.35 0.51 16 42 H 0.41 5.52 8.14 -40.82 -0.33 5.19 16 43 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 44 H 0.09 1.78 8.14 -51.91 -0.42 1.36 16 45 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.29 7.05 -51.93 -0.37 -0.07 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 402.78 15.07 6.07 6.07 Total: -1.00 -37.55 402.78 -8.60 -46.15 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.65 Total: 1.80 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 0.54 Total: -4.09 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.40 Total: -50.42 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.55 -8.60 -46.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275773383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.432 kcal (2) G-P(sol) polarization free energy of solvation -37.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds