Wall clock time and date at job start Sat Apr 11 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35314 * 126.12508 * 2 1 4 4 C 1.39875 * 107.92022 * 180.14864 * 3 2 1 5 5 C 1.50696 * 125.90035 * 179.86492 * 4 3 2 6 6 N 1.46906 * 109.47351 * 94.70999 * 5 4 3 7 7 C 1.46901 * 110.99793 * 293.95574 * 6 5 4 8 8 C 1.46898 * 110.99820 * 169.99890 * 6 5 4 9 9 H 1.08994 * 109.47410 * 309.99936 * 8 6 5 10 10 C 1.53001 * 109.46948 * 70.00145 * 8 6 5 11 11 C 1.53004 * 109.46619 * 189.99887 * 8 6 5 12 12 N 1.46498 * 109.47157 * 55.00517 * 11 8 6 13 13 C 1.34778 * 120.00164 * 179.97438 * 12 11 8 14 14 O 1.21284 * 119.99701 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00096 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47074 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00006 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99748 * 0.02562 * 17 16 15 19 19 C 1.38794 * 119.99750 * 180.02562 * 17 16 15 20 20 N 1.31634 * 120.00400 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99960 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46631 * 60.00183 * 21 19 17 23 23 H 1.48502 * 109.47282 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47284 * 300.00398 * 21 19 17 25 25 N 1.30837 * 108.19888 * 359.59213 * 4 3 2 26 26 N 1.34943 * 126.12725 * 179.70138 * 2 1 3 27 27 C 1.46507 * 126.03866 * 0.02562 * 26 2 1 28 28 H 1.09005 * 109.47527 * 270.29419 * 1 2 3 29 29 H 1.08999 * 109.47113 * 30.29788 * 1 2 3 30 30 H 1.09001 * 109.47192 * 150.29707 * 1 2 3 31 31 H 1.08001 * 126.04418 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.47055 * 334.71055 * 5 4 3 33 33 H 1.09001 * 109.47156 * 214.70823 * 5 4 3 34 34 H 1.09002 * 109.47401 * 59.99808 * 7 6 5 35 35 H 1.09001 * 109.46874 * 299.99821 * 7 6 5 36 36 H 1.09004 * 109.46970 * 179.97438 * 7 6 5 37 37 H 1.08991 * 109.47344 * 299.99707 * 10 8 6 38 38 H 1.09002 * 109.47146 * 59.99940 * 10 8 6 39 39 H 1.09007 * 109.46628 * 179.97438 * 10 8 6 40 40 H 1.09005 * 109.46617 * 175.00154 * 11 8 6 41 41 H 1.09001 * 109.47284 * 294.99815 * 11 8 6 42 42 H 0.97005 * 119.99841 * 359.97438 * 12 11 8 43 43 H 1.08995 * 109.47152 * 299.99466 * 15 13 12 44 44 H 1.09004 * 109.47188 * 60.00083 * 15 13 12 45 45 H 0.97005 * 119.99999 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.47023 * 270.02325 * 27 26 2 47 47 H 1.09001 * 109.46759 * 30.02225 * 27 26 2 48 48 H 1.08998 * 109.47094 * 150.01920 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6335 0.6560 -0.0035 5 6 4.8542 1.5395 -0.0075 6 7 5.3215 1.7355 1.3713 7 6 4.3411 2.4977 2.1561 8 6 6.6367 2.3896 1.3935 9 1 7.3146 1.8654 0.7200 10 6 6.4907 3.8436 0.9403 11 6 7.2006 2.3527 2.8153 12 7 7.2287 0.9683 3.2937 13 6 7.6905 0.6915 4.5293 14 8 8.0833 1.5885 5.2449 15 6 7.7188 -0.7325 5.0216 16 16 8.3875 -0.7763 6.7030 17 6 8.3078 -2.5079 7.0189 18 1 7.9254 -3.1777 6.2629 19 6 8.7364 -3.0111 8.2394 20 7 9.2020 -2.1947 9.1610 21 14 8.6513 -4.8468 8.5747 22 1 9.4794 -5.5710 7.5771 23 1 9.1654 -5.1251 9.9398 24 1 7.2420 -5.3037 8.4732 25 7 3.6333 -0.6524 0.0034 26 7 2.3026 -1.0899 0.0057 27 6 1.8539 -2.4846 0.0124 28 1 -0.3634 0.0053 1.0277 29 1 -0.3633 0.8873 -0.5184 30 1 -0.3634 -0.8926 -0.5092 31 1 1.9740 2.1211 0.0004 32 1 4.6025 2.5049 -0.4465 33 1 5.6422 1.0678 -0.5946 34 1 3.3956 1.9559 2.1812 35 1 4.1883 3.4742 1.6967 36 1 4.7119 2.6280 3.1729 37 1 6.0889 3.8700 -0.0725 38 1 5.8128 4.3679 1.6139 39 1 7.4666 4.3291 0.9572 40 1 8.2127 2.7577 2.8153 41 1 6.5697 2.9515 3.4722 42 1 6.9149 0.2509 2.7212 43 1 6.7067 -1.1369 5.0222 44 1 8.3492 -1.3316 4.3646 45 1 9.5019 -2.5465 10.0139 46 1 1.7418 -2.8252 1.0417 47 1 0.8958 -2.5604 -0.5017 48 1 2.5902 -3.1056 -0.4978 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275773383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:10 Heat of formation + Delta-G solvation = 17.672100 kcal Electronic energy + Delta-G solvation = -26941.122412 eV Core-core repulsion = 23158.139001 eV Total energy + Delta-G solvation = -3782.983411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.20259 -40.72498 -39.31074 -35.69198 -34.59311 -34.43399 -32.83598 -32.24504 -30.69380 -29.25958 -27.92632 -27.73947 -27.12493 -26.81448 -24.89508 -21.63536 -21.36225 -20.95536 -20.04400 -19.75655 -17.73482 -17.56659 -17.48556 -17.26970 -16.88335 -16.53405 -16.22594 -15.95801 -15.60298 -15.53694 -14.89414 -14.69568 -14.53725 -14.43260 -14.19463 -14.02075 -13.95355 -13.51252 -13.44390 -13.26027 -13.17408 -13.11771 -13.09274 -12.89921 -12.87449 -12.76402 -12.60434 -12.41562 -12.17633 -11.80455 -11.71050 -11.36247 -11.13535 -10.92662 -10.29286 -10.07176 -10.00520 -9.40984 -9.21243 -8.66918 -8.34754 -6.13041 0.95632 1.26721 1.43183 1.46023 1.56799 1.65606 1.67371 1.77176 2.26797 2.37377 2.98707 3.07898 3.33818 3.59033 3.76056 3.78252 3.98479 4.08330 4.15663 4.23925 4.28405 4.32285 4.36490 4.37801 4.44955 4.50322 4.63568 4.64513 4.64971 4.71243 4.75447 4.76213 4.81591 4.87034 4.92936 5.05105 5.07214 5.12729 5.31280 5.33357 5.40669 5.52009 5.73101 6.06180 6.10408 6.19270 6.20409 6.59309 6.85581 7.05861 7.30249 8.74371 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009992 B = 0.002563 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.539015 B =10922.577489 C =13179.911034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.077 3.923 3 C -0.286 4.286 4 C 0.074 3.926 5 C 0.140 3.860 6 N -0.540 5.540 7 C 0.026 3.974 8 C 0.080 3.920 9 H 0.102 0.898 10 C -0.179 4.179 11 C 0.130 3.870 12 N -0.700 5.700 13 C 0.532 3.468 14 O -0.570 6.570 15 C -0.128 4.128 16 S -0.146 6.146 17 C -0.549 4.549 18 H 0.080 0.920 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.263 1.263 25 N -0.323 5.323 26 N -0.384 5.384 27 C 0.092 3.908 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.157 0.843 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.415 0.585 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.272 0.728 46 H 0.076 0.924 47 H 0.115 0.885 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.338 6.884 -27.235 34.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.051 4.051 3 C -0.315 4.315 4 C -0.092 4.092 5 C 0.011 3.989 6 N -0.265 5.265 7 C -0.122 4.122 8 C -0.029 4.029 9 H 0.120 0.880 10 C -0.238 4.238 11 C 0.005 3.995 12 N -0.353 5.353 13 C 0.318 3.682 14 O -0.449 6.449 15 C -0.279 4.279 16 S 0.081 5.919 17 C -0.697 4.697 18 H 0.098 0.902 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.187 1.187 25 N -0.146 5.146 26 N -0.167 5.167 27 C -0.048 4.048 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.175 0.825 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.252 0.748 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.133 0.867 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.917 6.717 -25.697 32.039 hybrid contribution -0.944 -0.864 -0.635 1.429 sum -18.861 5.853 -26.332 32.915 Atomic orbital electron populations 1.20571 0.84750 1.05200 1.04179 1.21707 0.96311 0.86922 1.00114 1.21365 0.91483 0.99844 1.18848 1.22324 0.96104 0.91405 0.99364 1.20380 0.92340 0.96542 0.89611 1.61981 1.02693 1.49660 1.12142 1.22373 0.95531 0.96716 0.97567 1.21927 0.90629 0.95388 0.94945 0.88005 1.22347 1.03673 0.95413 1.02328 1.21491 1.00788 0.82344 0.94832 1.45640 1.64329 1.10605 1.14740 1.19989 0.76642 0.89638 0.81977 1.90670 1.48721 1.48605 1.56914 1.23340 1.05610 0.97206 1.01739 1.85482 1.83021 1.11492 1.11941 1.23166 1.49728 0.92383 1.04381 0.90233 1.26139 0.93710 1.04732 0.94543 1.70180 1.40586 1.37514 1.06424 0.84999 0.79222 0.76022 0.77708 1.18669 1.20114 1.18727 1.77304 0.97818 1.13527 1.25913 1.48778 1.03473 1.07354 1.57093 1.22095 1.02137 0.76514 1.04070 0.89584 0.88302 0.89603 0.82517 0.90586 0.89248 0.92172 0.93074 0.92852 0.90410 0.91904 0.90827 0.91366 0.92668 0.74807 0.88164 0.87657 0.91927 0.90519 0.86676 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 10.12 71.23 0.72 0.09 16 2 C 0.08 1.23 6.93 41.40 0.29 1.52 16 3 C -0.29 -4.97 9.64 21.99 0.21 -4.76 16 4 C 0.07 1.53 5.93 43.10 0.26 1.79 16 5 C 0.14 2.24 5.10 85.55 0.44 2.67 16 6 N -0.54 -9.75 4.14 -901.60 -3.74 -13.48 16 7 C 0.03 0.48 8.44 127.69 1.08 1.56 16 8 C 0.08 1.29 2.47 44.92 0.11 1.40 16 9 H 0.10 1.48 7.93 -2.39 -0.02 1.46 16 10 C -0.18 -2.10 8.44 71.98 0.61 -1.49 16 11 C 0.13 3.11 4.85 86.38 0.42 3.53 16 12 N -0.70 -20.55 5.39 -463.05 -2.50 -23.04 16 13 C 0.53 21.50 7.85 87.66 0.69 22.19 16 14 O -0.57 -27.94 15.86 -3.04 -0.05 -27.99 16 15 C -0.13 -5.56 6.16 71.23 0.44 -5.13 16 16 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 17 C -0.55 -32.63 9.50 67.95 0.65 -31.99 16 18 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 19 C 0.01 0.79 5.49 84.86 0.47 1.26 16 20 N -0.91 -57.26 13.22 21.65 0.29 -56.97 16 21 Si 1.00 44.82 29.55 68.60 2.03 46.85 16 22 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 25 N -0.32 -7.98 12.58 -47.38 -0.60 -8.57 16 26 N -0.38 -7.40 4.01 -356.02 -1.43 -8.83 16 27 C 0.09 1.06 11.27 127.77 1.44 2.50 16 28 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.09 0.33 7.08 -2.39 -0.02 0.31 16 31 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 32 H 0.08 0.89 7.06 -2.39 -0.02 0.88 16 33 H 0.09 1.39 7.93 -2.39 -0.02 1.37 16 34 H 0.06 1.23 6.54 -2.39 -0.02 1.21 16 35 H 0.05 0.72 6.46 -2.39 -0.02 0.71 16 36 H 0.05 1.18 6.41 -2.38 -0.02 1.17 16 37 H 0.08 0.69 6.91 -2.39 -0.02 0.68 16 38 H 0.06 0.79 6.42 -2.39 -0.02 0.77 16 39 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.06 1.47 6.71 -2.39 -0.02 1.45 16 42 H 0.42 10.80 8.14 -92.70 -0.75 10.04 16 43 H 0.10 4.11 8.14 -2.40 -0.02 4.09 16 44 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 45 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 46 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.11 0.54 7.05 -2.39 -0.02 0.53 16 48 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -84.04 402.78 0.86 -83.18 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.21 Total: 23.42 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 7.80 Total: -4.87 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -7.97 Total: -110.90 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.05 Total: -27.99 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -84.04 0.86 -83.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275773383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.851 kcal (2) G-P(sol) polarization free energy of solvation -84.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds