Wall clock time and date at job start Sat Apr 11 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 110.38906 * 2 1 4 4 N 1.46507 * 109.46992 * 302.23622 * 3 2 1 5 5 C 1.36939 * 119.99619 * 180.02562 * 4 3 2 6 6 H 1.07997 * 120.00488 * 359.97438 * 5 4 3 7 7 C 1.38818 * 119.99611 * 179.97438 * 5 4 3 8 8 N 1.31613 * 120.00118 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99631 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46945 * 90.00213 * 9 7 5 11 11 H 1.48500 * 109.46923 * 209.99855 * 9 7 5 12 12 H 1.48497 * 109.47449 * 330.00063 * 9 7 5 13 13 C 1.54279 * 110.34367 * 122.23091 * 2 1 3 14 14 C 1.54394 * 104.96043 * 118.86713 * 13 2 1 15 15 N 1.48148 * 104.61513 * 336.13749 * 14 13 2 16 16 C 1.34779 * 127.83106 * 219.60165 * 15 14 13 17 17 O 1.21491 * 119.99568 * 174.48036 * 16 15 14 18 18 C 1.48375 * 120.00538 * 354.47972 * 16 15 14 19 19 C 1.40207 * 119.22091 * 184.58776 * 18 16 15 20 20 C 1.36641 * 119.90678 * 179.76127 * 19 18 16 21 21 C 1.40556 * 118.10450 * 0.49977 * 20 19 18 22 22 C 1.40404 * 122.05564 * 179.77094 * 21 20 19 23 23 N 1.31248 * 119.87565 * 179.97438 * 22 21 20 24 24 C 1.32594 * 122.67723 * 0.02562 * 23 22 21 25 25 C 1.36106 * 121.99963 * 359.97438 * 24 23 22 26 26 C 1.40936 * 118.76601 * 359.97438 * 25 24 23 27 27 N 1.31989 * 119.21632 * 4.86339 * 18 16 15 28 28 C 1.48141 * 104.32477 * 39.58293 * 15 14 13 29 29 H 1.09008 * 109.47233 * 297.76839 * 1 2 3 30 30 H 1.09000 * 109.47365 * 57.76692 * 1 2 3 31 31 H 1.09001 * 109.47041 * 177.77112 * 1 2 3 32 32 H 1.08999 * 109.47344 * 62.22814 * 3 2 1 33 33 H 1.08997 * 109.47139 * 182.23707 * 3 2 1 34 34 H 0.96993 * 120.00098 * 359.97438 * 4 3 2 35 35 H 0.96998 * 119.99915 * 179.97438 * 8 7 5 36 36 H 1.09001 * 110.34501 * 359.97438 * 13 2 1 37 37 H 1.08998 * 110.43760 * 237.78501 * 13 2 1 38 38 H 1.09003 * 110.40088 * 94.91557 * 14 13 2 39 39 H 1.08996 * 110.40917 * 217.34744 * 14 13 2 40 40 H 1.08008 * 120.04258 * 0.02562 * 19 18 16 41 41 H 1.08000 * 120.94569 * 180.25106 * 20 19 18 42 42 H 1.08004 * 120.06395 * 359.95650 * 22 21 20 43 43 H 1.08008 * 119.00287 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.61377 * 180.02562 * 25 24 23 45 45 H 1.09002 * 110.40197 * 201.62963 * 28 15 14 46 46 H 1.08994 * 110.50725 * 79.25350 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4341 0.0000 4 7 1.5425 2.1485 -1.1684 5 6 1.8869 3.4569 -1.3803 6 1 2.5419 3.9622 -0.6860 7 6 1.3942 4.1336 -2.4876 8 7 0.5964 3.5177 -3.3340 9 14 1.8634 5.9185 -2.7763 10 1 3.0981 5.9789 -3.5991 11 1 0.7597 6.6115 -3.4883 12 1 2.1053 6.5841 -1.4710 13 6 2.0664 -0.7715 1.2236 14 6 2.8801 -1.9423 0.6313 15 7 2.3138 -2.1438 -0.7227 16 6 2.0769 -3.3105 -1.3544 17 8 1.5131 -3.3150 -2.4306 18 6 2.5048 -4.5895 -0.7358 19 6 2.3379 -5.7847 -1.4496 20 6 2.7315 -6.9699 -0.8952 21 6 3.2880 -6.9449 0.3953 22 6 3.7156 -8.1137 1.0452 23 7 4.2298 -8.0406 2.2506 24 6 4.3689 -6.8937 2.9012 25 6 3.9855 -5.7057 2.3589 26 6 3.4247 -5.6999 1.0660 27 7 3.0283 -4.5757 0.4758 28 6 2.0667 -0.7720 -1.2245 29 1 -0.3634 0.4788 0.9094 30 1 -0.3634 0.5481 -0.8693 31 1 -0.3633 -1.0269 -0.0400 32 1 1.7408 1.9415 0.9093 33 1 3.1521 1.4169 -0.0401 34 1 0.9546 1.6946 -1.7922 35 1 0.2518 3.9907 -4.1076 36 1 1.2399 -1.1501 1.8250 37 1 2.7092 -0.1299 1.8263 38 1 3.9354 -1.6770 0.5663 39 1 2.7495 -2.8400 1.2355 40 1 1.9028 -5.7680 -2.4380 41 1 2.6145 -7.8999 -1.4316 42 1 3.6214 -9.0711 0.5543 43 1 4.7995 -6.9025 3.8917 44 1 4.1096 -4.7845 2.9089 45 1 1.3222 -0.7870 -2.0206 46 1 2.9937 -0.3229 -1.5807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278556112.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:15 Heat of formation + Delta-G solvation = 60.505283 kcal Electronic energy + Delta-G solvation = -28879.954307 eV Core-core repulsion = 24963.384330 eV Total energy + Delta-G solvation = -3916.569976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.73974 -40.12365 -38.59904 -37.66071 -34.89655 -34.13835 -32.77749 -31.97376 -30.90981 -30.37067 -29.17166 -27.16178 -25.96860 -25.16696 -24.43148 -23.56678 -23.03467 -21.97266 -20.49905 -18.99565 -18.71985 -17.88842 -17.67524 -16.94795 -16.27458 -15.99572 -15.82211 -15.25740 -15.19671 -14.76828 -14.56271 -14.21862 -14.16762 -13.91221 -13.57831 -13.47088 -13.32309 -13.10081 -12.92473 -12.76071 -12.35621 -12.29353 -12.02985 -11.51417 -11.39667 -11.20632 -10.98722 -10.81846 -10.67968 -10.47932 -10.30321 -10.24650 -10.19780 -9.89897 -9.76312 -9.65877 -9.51664 -9.01123 -8.86209 -8.60215 -6.90099 -5.74215 -3.02969 -0.42352 0.09290 1.33733 2.10715 2.77156 3.01189 3.45012 3.49959 3.51821 3.51944 3.64284 3.84167 3.99452 4.16680 4.19472 4.31509 4.59316 4.64369 4.80369 4.87132 4.89273 5.08695 5.10266 5.17158 5.23939 5.41755 5.46968 5.52574 5.54579 5.61661 5.73140 5.81633 5.89111 5.99007 6.03908 6.06732 6.13557 6.16985 6.21569 6.30294 6.44448 6.58998 6.69169 6.79744 6.87028 7.10342 7.39496 7.55017 7.71825 8.02320 8.44432 9.55726 10.13229 10.47778 11.48521 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024627 B = 0.002286 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.674413 B =12246.350954 C =12906.799427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.080 4.080 3 C 0.168 3.832 4 N -0.731 5.731 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.932 5.932 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.126 4.126 14 C 0.091 3.909 15 N -0.596 5.596 16 C 0.578 3.422 17 O -0.527 6.527 18 C 0.153 3.847 19 C -0.130 4.130 20 C -0.036 4.036 21 C -0.157 4.157 22 C 0.160 3.840 23 N -0.485 5.485 24 C 0.088 3.912 25 C -0.135 4.135 26 C 0.150 3.850 27 N -0.442 5.442 28 C 0.117 3.883 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.023 0.977 33 H 0.021 0.979 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.113 0.887 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.169 0.831 43 H 0.162 0.838 44 H 0.150 0.850 45 H 0.087 0.913 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.148 -25.182 11.731 28.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.081 4.081 3 C 0.040 3.960 4 N -0.376 5.376 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.581 5.581 9 Si 0.738 3.262 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.165 4.165 14 C -0.032 4.032 15 N -0.327 5.327 16 C 0.364 3.636 17 O -0.403 6.403 18 C -0.002 4.002 19 C -0.151 4.151 20 C -0.064 4.064 21 C -0.161 4.161 22 C -0.013 4.013 23 N -0.193 5.193 24 C -0.055 4.055 25 C -0.155 4.155 26 C 0.022 3.978 27 N -0.154 5.154 28 C -0.004 4.004 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.131 0.869 40 H 0.175 0.825 41 H 0.172 0.828 42 H 0.186 0.814 43 H 0.179 0.821 44 H 0.168 0.832 45 H 0.106 0.894 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.347 -24.992 12.193 28.523 hybrid contribution -0.258 1.015 -1.249 1.630 sum 6.089 -23.977 10.945 27.051 Atomic orbital electron populations 1.21781 0.93559 1.00531 1.02914 1.21686 0.96619 0.96135 0.93652 1.20720 0.95713 0.87984 0.91594 1.42420 1.58246 1.10863 1.26097 1.19208 1.23728 0.87923 1.06218 0.91229 1.24737 1.00193 0.98288 0.97741 1.69654 1.37062 1.36254 1.15082 0.86202 0.77421 0.84964 0.77660 1.21780 1.21824 1.20820 1.22667 0.99943 0.96481 0.97389 1.22919 0.97056 1.00253 0.82945 1.48830 1.60319 1.05498 1.18062 1.17423 0.79947 0.81769 0.84429 1.90829 1.42188 1.86051 1.21217 1.21659 0.93754 0.94570 0.90223 1.21855 0.99525 0.91342 1.02382 1.21469 0.93007 0.99173 0.92743 1.19958 1.02977 0.96106 0.97042 1.23267 0.90921 0.97011 0.90139 1.67505 1.13274 1.29586 1.08897 1.22299 0.96310 0.87021 0.99910 1.21812 0.99235 1.00816 0.93643 1.19001 0.95805 0.88155 0.94803 1.68114 1.09758 1.28216 1.09337 1.22601 1.02025 0.78555 0.97211 0.92681 0.91151 0.93758 0.95881 0.96127 0.78048 0.93498 0.91113 0.90143 0.91381 0.86923 0.82525 0.82840 0.81406 0.82105 0.83227 0.89434 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.07 37.16 0.30 -1.85 16 2 C -0.08 -1.28 0.73 -153.11 -0.11 -1.39 16 3 C 0.17 3.26 4.87 -4.04 -0.02 3.24 16 4 N -0.73 -18.12 5.12 -59.91 -0.31 -18.43 16 5 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 9 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C -0.13 -1.58 6.30 -25.33 -0.16 -1.73 16 14 C 0.09 1.11 6.43 -2.40 -0.02 1.09 16 15 N -0.60 -8.89 3.32 -170.22 -0.56 -9.46 16 16 C 0.58 8.88 7.90 -12.09 -0.10 8.78 16 17 O -0.53 -9.60 16.54 5.37 0.09 -9.51 16 18 C 0.15 1.87 6.73 -82.89 -0.56 1.31 16 19 C -0.13 -1.25 9.53 -39.42 -0.38 -1.63 16 20 C -0.04 -0.25 9.92 -39.28 -0.39 -0.64 16 21 C -0.16 -1.28 5.75 -106.74 -0.61 -1.89 16 22 C 0.16 1.09 11.05 -16.99 -0.19 0.91 16 23 N -0.48 -4.00 10.30 -13.18 -0.14 -4.14 16 24 C 0.09 0.63 11.05 -17.99 -0.20 0.43 16 25 C -0.13 -1.05 10.08 -39.33 -0.40 -1.45 16 26 C 0.15 1.47 6.63 -84.86 -0.56 0.91 16 27 N -0.44 -5.00 6.62 -7.49 -0.05 -5.05 16 28 C 0.12 2.00 5.73 -2.41 -0.01 1.98 16 29 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 30 H 0.07 1.35 6.75 -51.93 -0.35 1.00 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.40 8.10 -51.93 -0.42 -0.02 16 34 H 0.38 10.08 6.18 -40.82 -0.25 9.83 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.07 0.83 7.71 -51.93 -0.40 0.43 16 37 H 0.08 0.91 7.72 -51.93 -0.40 0.51 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.11 1.27 5.32 -51.93 -0.28 1.00 16 40 H 0.16 1.40 7.61 -52.48 -0.40 1.01 16 41 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 42 H 0.17 0.57 8.06 -52.48 -0.42 0.14 16 43 H 0.16 0.71 8.06 -52.48 -0.42 0.28 16 44 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 45 H 0.09 1.68 7.56 -51.93 -0.39 1.29 16 46 H 0.08 1.46 7.83 -51.93 -0.41 1.06 16 LS Contribution 377.82 15.07 5.69 5.69 Total: -1.00 -34.05 377.82 -9.45 -43.50 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.23 Total: 6.70 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -3.65 Total: 0.80 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: -0.33 Total: -64.63 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.05 -9.45 -43.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278556112.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.003 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds