Wall clock time and date at job start Sat Apr 11 2020 06:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 110.38906 * 2 1 4 4 N 1.46507 * 109.46992 * 302.23622 * 3 2 1 5 5 C 1.36939 * 119.99619 * 180.02562 * 4 3 2 6 6 H 1.07997 * 120.00488 * 359.97438 * 5 4 3 7 7 C 1.38818 * 119.99611 * 179.97438 * 5 4 3 8 8 N 1.31613 * 120.00118 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99631 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46945 * 90.00213 * 9 7 5 11 11 H 1.48500 * 109.46923 * 209.99855 * 9 7 5 12 12 H 1.48497 * 109.47449 * 330.00063 * 9 7 5 13 13 C 1.54279 * 110.34367 * 122.23091 * 2 1 3 14 14 C 1.54394 * 104.96043 * 118.86713 * 13 2 1 15 15 N 1.48148 * 104.61513 * 336.13749 * 14 13 2 16 16 C 1.34779 * 127.83106 * 219.60165 * 15 14 13 17 17 O 1.21491 * 119.99568 * 174.48036 * 16 15 14 18 18 C 1.48375 * 120.00538 * 354.47972 * 16 15 14 19 19 C 1.40207 * 119.22091 * 184.58776 * 18 16 15 20 20 C 1.36641 * 119.90678 * 179.76127 * 19 18 16 21 21 C 1.40556 * 118.10450 * 0.49977 * 20 19 18 22 22 C 1.40404 * 122.05564 * 179.77094 * 21 20 19 23 23 N 1.31248 * 119.87565 * 179.97438 * 22 21 20 24 24 C 1.32594 * 122.67723 * 0.02562 * 23 22 21 25 25 C 1.36106 * 121.99963 * 359.97438 * 24 23 22 26 26 C 1.40936 * 118.76601 * 359.97438 * 25 24 23 27 27 N 1.31989 * 119.21632 * 4.86339 * 18 16 15 28 28 C 1.48141 * 104.32477 * 39.58293 * 15 14 13 29 29 H 1.09008 * 109.47233 * 297.76839 * 1 2 3 30 30 H 1.09000 * 109.47365 * 57.76692 * 1 2 3 31 31 H 1.09001 * 109.47041 * 177.77112 * 1 2 3 32 32 H 1.08999 * 109.47344 * 62.22814 * 3 2 1 33 33 H 1.08997 * 109.47139 * 182.23707 * 3 2 1 34 34 H 0.96993 * 120.00098 * 359.97438 * 4 3 2 35 35 H 0.96998 * 119.99915 * 179.97438 * 8 7 5 36 36 H 1.09001 * 110.34501 * 359.97438 * 13 2 1 37 37 H 1.08998 * 110.43760 * 237.78501 * 13 2 1 38 38 H 1.09003 * 110.40088 * 94.91557 * 14 13 2 39 39 H 1.08996 * 110.40917 * 217.34744 * 14 13 2 40 40 H 1.08008 * 120.04258 * 0.02562 * 19 18 16 41 41 H 1.08000 * 120.94569 * 180.25106 * 20 19 18 42 42 H 1.08004 * 120.06395 * 359.95650 * 22 21 20 43 43 H 1.08008 * 119.00287 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.61377 * 180.02562 * 25 24 23 45 45 H 1.09002 * 110.40197 * 201.62963 * 28 15 14 46 46 H 1.08994 * 110.50725 * 79.25350 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4341 0.0000 4 7 1.5425 2.1485 -1.1684 5 6 1.8869 3.4569 -1.3803 6 1 2.5419 3.9622 -0.6860 7 6 1.3942 4.1336 -2.4876 8 7 0.5964 3.5177 -3.3340 9 14 1.8634 5.9185 -2.7763 10 1 3.0981 5.9789 -3.5991 11 1 0.7597 6.6115 -3.4883 12 1 2.1053 6.5841 -1.4710 13 6 2.0664 -0.7715 1.2236 14 6 2.8801 -1.9423 0.6313 15 7 2.3138 -2.1438 -0.7227 16 6 2.0769 -3.3105 -1.3544 17 8 1.5131 -3.3150 -2.4306 18 6 2.5048 -4.5895 -0.7358 19 6 2.3379 -5.7847 -1.4496 20 6 2.7315 -6.9699 -0.8952 21 6 3.2880 -6.9449 0.3953 22 6 3.7156 -8.1137 1.0452 23 7 4.2298 -8.0406 2.2506 24 6 4.3689 -6.8937 2.9012 25 6 3.9855 -5.7057 2.3589 26 6 3.4247 -5.6999 1.0660 27 7 3.0283 -4.5757 0.4758 28 6 2.0667 -0.7720 -1.2245 29 1 -0.3634 0.4788 0.9094 30 1 -0.3634 0.5481 -0.8693 31 1 -0.3633 -1.0269 -0.0400 32 1 1.7408 1.9415 0.9093 33 1 3.1521 1.4169 -0.0401 34 1 0.9546 1.6946 -1.7922 35 1 0.2518 3.9907 -4.1076 36 1 1.2399 -1.1501 1.8250 37 1 2.7092 -0.1299 1.8263 38 1 3.9354 -1.6770 0.5663 39 1 2.7495 -2.8400 1.2355 40 1 1.9028 -5.7680 -2.4380 41 1 2.6145 -7.8999 -1.4316 42 1 3.6214 -9.0711 0.5543 43 1 4.7995 -6.9025 3.8917 44 1 4.1096 -4.7845 2.9089 45 1 1.3222 -0.7870 -2.0206 46 1 2.9937 -0.3229 -1.5807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278556112.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:14 Heat of formation + Delta-G solvation = 38.385411 kcal Electronic energy + Delta-G solvation = -28880.913496 eV Core-core repulsion = 24963.384330 eV Total energy + Delta-G solvation = -3917.529166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.43723 -41.22500 -39.61674 -38.64971 -36.51852 -34.92426 -34.29600 -32.83829 -32.10103 -31.48529 -30.45594 -28.31095 -27.54483 -26.26375 -25.27865 -24.89101 -23.82552 -23.35256 -21.47953 -20.18179 -19.60873 -19.30807 -18.53449 -18.26963 -17.25829 -17.19243 -16.78042 -16.54902 -15.97814 -15.82129 -15.52852 -15.47827 -15.35954 -15.17224 -14.96026 -14.59290 -14.33047 -14.14797 -13.95955 -13.75219 -13.64335 -13.51285 -13.25308 -13.03331 -12.84494 -12.74801 -12.47010 -12.15252 -12.09321 -11.82345 -11.79893 -11.64062 -11.49083 -11.33462 -10.92898 -10.81931 -10.49679 -10.37106 -9.82482 -9.57561 -8.97112 -7.92992 -5.21433 -1.09636 -0.54807 0.72951 1.26378 1.47239 1.49096 1.57470 1.66870 2.14841 2.56909 2.69187 2.97591 3.33131 3.37740 3.40843 3.46520 3.58785 3.61516 3.67308 3.75669 3.82443 3.96537 4.20777 4.25988 4.32047 4.35414 4.41435 4.54378 4.61370 4.66602 4.69435 4.75361 4.76704 4.85702 4.90741 4.92875 4.99983 5.04037 5.08973 5.13080 5.26775 5.33314 5.37524 5.45839 5.52185 5.57190 6.28709 6.29997 6.43042 6.86072 6.86909 7.35276 8.12086 8.34356 9.30718 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024627 B = 0.002286 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.674413 B =12246.350954 C =12906.799427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.072 4.072 3 C 0.167 3.833 4 N -0.744 5.744 5 C -0.240 4.240 6 H 0.079 0.921 7 C -0.079 4.079 8 N -0.971 5.971 9 Si 0.973 3.027 10 H -0.289 1.289 11 H -0.298 1.298 12 H -0.267 1.267 13 C -0.115 4.115 14 C 0.095 3.905 15 N -0.598 5.598 16 C 0.572 3.428 17 O -0.569 6.569 18 C 0.133 3.867 19 C -0.149 4.149 20 C -0.008 4.008 21 C -0.165 4.165 22 C 0.170 3.830 23 N -0.505 5.505 24 C 0.092 3.908 25 C -0.145 4.145 26 C 0.129 3.871 27 N -0.452 5.452 28 C 0.122 3.878 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.051 0.949 32 H 0.032 0.968 33 H 0.027 0.973 34 H 0.374 0.626 35 H 0.250 0.750 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.128 0.872 40 H 0.156 0.844 41 H 0.199 0.801 42 H 0.206 0.794 43 H 0.187 0.813 44 H 0.163 0.837 45 H 0.054 0.946 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.632 -27.374 14.326 31.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.073 4.073 3 C 0.041 3.959 4 N -0.387 5.387 5 C -0.372 4.372 6 H 0.097 0.903 7 C -0.271 4.271 8 N -0.623 5.623 9 Si 0.802 3.198 10 H -0.216 1.216 11 H -0.225 1.225 12 H -0.192 1.192 13 C -0.154 4.154 14 C -0.026 4.026 15 N -0.329 5.329 16 C 0.360 3.640 17 O -0.448 6.448 18 C -0.021 4.021 19 C -0.170 4.170 20 C -0.035 4.035 21 C -0.169 4.169 22 C -0.003 4.003 23 N -0.213 5.213 24 C -0.051 4.051 25 C -0.165 4.165 26 C 0.001 3.999 27 N -0.165 5.165 28 C 0.000 4.000 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.206 0.794 35 H 0.058 0.942 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.145 0.855 40 H 0.173 0.827 41 H 0.216 0.784 42 H 0.223 0.777 43 H 0.204 0.796 44 H 0.181 0.819 45 H 0.072 0.928 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.870 -27.189 14.862 31.969 hybrid contribution -0.647 1.532 -1.950 2.563 sum 7.222 -25.656 12.912 29.616 Atomic orbital electron populations 1.21687 0.93939 1.00531 1.01848 1.21565 0.96161 0.94484 0.95090 1.20890 0.95838 0.89436 0.89747 1.42647 1.58169 1.10458 1.27460 1.19652 1.22610 0.89094 1.05820 0.90340 1.25577 1.00974 1.02524 0.98030 1.69831 1.38923 1.37801 1.15707 0.85138 0.76607 0.80129 0.77877 1.21623 1.22488 1.19173 1.22658 1.00720 0.96161 0.95820 1.23066 0.97244 1.00795 0.81505 1.48918 1.60360 1.04569 1.19008 1.18037 0.79071 0.82857 0.84020 1.90787 1.44062 1.86874 1.23085 1.21247 0.95972 0.93546 0.91326 1.21906 1.00970 0.91517 1.02578 1.21917 0.89924 0.99701 0.91997 1.20224 1.03043 0.96130 0.97532 1.23858 0.89077 0.97846 0.89565 1.67604 1.13963 1.30065 1.09625 1.22728 0.95199 0.86473 1.00717 1.21993 0.99544 1.01822 0.93149 1.19377 0.96310 0.88456 0.95742 1.67919 1.10132 1.29435 1.08971 1.22323 1.00281 0.80438 0.96996 0.91348 0.94665 0.92990 0.94995 0.95502 0.79371 0.94172 0.89550 0.88101 0.90585 0.85476 0.82668 0.78350 0.77742 0.79642 0.81948 0.92780 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.13 8.07 71.98 0.58 -3.55 16 2 C -0.07 -2.31 0.73 -51.28 -0.04 -2.35 16 3 C 0.17 6.48 4.87 86.38 0.42 6.90 16 4 N -0.74 -37.84 5.12 -343.44 -1.76 -39.60 16 5 C -0.24 -13.43 9.99 84.03 0.84 -12.59 16 6 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 7 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 8 N -0.97 -61.03 13.06 21.65 0.28 -60.75 16 9 Si 0.97 46.87 29.55 68.60 2.03 48.89 16 10 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 11 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 C -0.12 -2.66 6.30 31.50 0.20 -2.46 16 14 C 0.10 2.22 6.43 86.54 0.56 2.78 16 15 N -0.60 -18.38 3.32 -810.75 -2.69 -21.07 16 16 C 0.57 18.41 7.90 86.94 0.69 19.09 16 17 O -0.57 -22.25 16.54 -3.69 -0.06 -22.31 16 18 C 0.13 3.26 6.73 42.30 0.28 3.54 16 19 C -0.15 -2.76 9.53 22.37 0.21 -2.55 16 20 C -0.01 -0.09 9.92 22.46 0.22 0.14 16 21 C -0.17 -2.23 5.75 -21.24 -0.12 -2.35 16 22 C 0.17 1.68 11.05 85.31 0.94 2.62 16 23 N -0.50 -6.68 10.30 -195.60 -2.02 -8.70 16 24 C 0.09 1.05 11.05 84.08 0.93 1.98 16 25 C -0.14 -1.93 10.08 22.43 0.23 -1.71 16 26 C 0.13 2.29 6.63 40.58 0.27 2.56 16 27 N -0.45 -9.82 6.62 -177.62 -1.18 -10.99 16 28 C 0.12 4.39 5.73 86.54 0.50 4.88 16 29 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.03 1.42 6.75 -2.39 -0.02 1.40 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.03 1.03 8.10 -2.39 -0.02 1.01 16 34 H 0.37 20.61 6.18 -92.71 -0.57 20.03 16 35 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.09 1.78 7.71 -2.39 -0.02 1.76 16 37 H 0.10 1.97 7.72 -2.39 -0.02 1.96 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 39 H 0.13 2.67 5.32 -2.39 -0.01 2.66 16 40 H 0.16 2.83 7.61 -2.91 -0.02 2.81 16 41 H 0.20 0.27 8.06 -2.91 -0.02 0.25 16 42 H 0.21 0.34 8.06 -2.91 -0.02 0.32 16 43 H 0.19 1.02 8.06 -2.91 -0.02 1.00 16 44 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 45 H 0.05 2.28 7.56 -2.39 -0.02 2.26 16 46 H 0.07 2.56 7.83 -2.39 -0.02 2.54 16 Total: -1.00 -77.40 377.82 2.22 -75.18 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.44 Total: 26.55 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 7.17 Total: 12.80 kcal Atomic # 7 Polarization: -133.75 SS G_CDS: -7.36 Total: -141.10 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.06 Total: -22.31 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal Total: -77.40 2.22 -75.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278556112.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.561 kcal (2) G-P(sol) polarization free energy of solvation -77.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds