Wall clock time and date at job start Sat Apr 11 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35318 * 126.12140 * 2 1 4 4 C 1.39868 * 107.91584 * 180.14767 * 3 2 1 5 5 C 1.50704 * 125.90004 * 179.86300 * 4 3 2 6 6 N 1.46902 * 109.46836 * 94.71506 * 5 4 3 7 7 C 1.46903 * 111.00007 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47301 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.47159 * 179.97438 * 8 7 6 10 10 H 1.09007 * 109.46427 * 55.00086 * 9 8 7 11 11 C 1.53001 * 109.47065 * 174.99654 * 9 8 7 12 12 N 1.46497 * 109.47036 * 294.99799 * 9 8 7 13 13 C 1.34777 * 119.99525 * 154.99621 * 12 9 8 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 9 15 15 C 1.50700 * 119.99675 * 179.72583 * 13 12 9 16 16 S 1.80997 * 109.47151 * 180.27780 * 15 13 12 17 17 C 1.76196 * 100.00314 * 179.97438 * 16 15 13 18 18 H 1.08005 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00626 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99674 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00584 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46793 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47282 * 119.99523 * 21 19 17 24 24 H 1.48500 * 109.47237 * 240.00020 * 21 19 17 25 25 N 1.30839 * 108.20559 * 359.59851 * 4 3 2 26 26 N 1.34945 * 126.12791 * 179.70902 * 2 1 3 27 27 C 1.46498 * 126.03802 * 359.97438 * 26 2 1 28 28 H 1.09006 * 109.47224 * 270.29384 * 1 2 3 29 29 H 1.08994 * 109.47513 * 30.29014 * 1 2 3 30 30 H 1.09000 * 109.46972 * 150.29333 * 1 2 3 31 31 H 1.07995 * 126.04549 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.47171 * 334.71790 * 5 4 3 33 33 H 1.08999 * 109.47181 * 214.71502 * 5 4 3 34 34 H 1.00901 * 111.00406 * 303.95335 * 6 5 4 35 35 H 1.08994 * 109.47146 * 59.99493 * 7 6 5 36 36 H 1.09008 * 109.46497 * 300.00104 * 7 6 5 37 37 H 1.09002 * 109.47208 * 60.00104 * 8 7 6 38 38 H 1.09003 * 109.47291 * 299.99940 * 8 7 6 39 39 H 1.09002 * 109.46839 * 60.00194 * 11 9 8 40 40 H 1.08998 * 109.46617 * 180.02562 * 11 9 8 41 41 H 1.09003 * 109.47371 * 300.00160 * 11 9 8 42 42 H 0.97000 * 120.00580 * 335.00367 * 12 9 8 43 43 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 44 44 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 45 45 H 0.97003 * 120.00297 * 179.97438 * 20 19 17 46 46 H 1.09006 * 109.46794 * 270.02229 * 27 26 2 47 47 H 1.09003 * 109.47037 * 30.02037 * 27 26 2 48 48 H 1.08992 * 109.47426 * 150.02844 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0931 0.0000 4 6 3.6334 0.6561 -0.0034 5 6 4.8542 1.5396 -0.0075 6 7 5.3215 1.7355 1.3713 7 6 6.5128 2.5944 1.4065 8 6 6.9692 2.7743 2.8556 9 6 8.2103 3.6684 2.8922 10 1 7.9958 4.6086 2.3841 11 6 8.5931 3.9504 4.3464 12 7 9.3203 2.9908 2.2176 13 6 10.3225 3.7127 1.6783 14 8 10.3058 4.9232 1.7519 15 6 11.4675 3.0154 0.9898 16 16 12.6468 4.2471 0.3830 17 6 13.8451 3.1863 -0.3541 18 1 13.7055 2.1156 -0.3310 19 6 14.9680 3.7266 -0.9654 20 7 15.1374 5.0317 -0.9950 21 14 16.2380 2.6020 -1.7475 22 1 15.8165 1.1879 -1.5806 23 1 16.3541 2.9170 -3.1941 24 1 17.5531 2.8071 -1.0891 25 7 3.6334 -0.6523 0.0033 26 7 2.3026 -1.0899 0.0055 27 6 1.8540 -2.4845 0.0131 28 1 -0.3634 0.0053 1.0277 29 1 -0.3634 0.8873 -0.5183 30 1 -0.3633 -0.8926 -0.5093 31 1 1.9740 2.1211 0.0004 32 1 4.6025 2.5051 -0.4464 33 1 5.6422 1.0679 -0.5947 34 1 4.5873 2.1122 1.9519 35 1 6.2722 3.5670 0.9775 36 1 7.3124 2.1303 0.8290 37 1 7.2100 1.8015 3.2842 38 1 6.1697 3.2381 3.4335 39 1 8.8075 3.0101 4.8545 40 1 9.4770 4.5876 4.3724 41 1 7.7673 4.4545 4.8484 42 1 9.3338 2.0227 2.1589 43 1 11.9664 2.3518 1.6961 44 1 11.0866 2.4330 0.1509 45 1 15.9223 5.4093 -1.4218 46 1 1.7427 -2.8247 1.0428 47 1 0.8954 -2.5606 -0.5003 48 1 2.5899 -3.1058 -0.4971 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320348596.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:53 Heat of formation + Delta-G solvation = 26.912926 kcal Electronic energy + Delta-G solvation = -25709.754456 eV Core-core repulsion = 21927.171757 eV Total energy + Delta-G solvation = -3782.582699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.58322 -39.39500 -37.22164 -35.52615 -33.71885 -32.39766 -32.38098 -31.72933 -29.71412 -28.42886 -27.42128 -27.19184 -25.45311 -24.82146 -22.60664 -21.31180 -20.68496 -20.22511 -19.69351 -17.79604 -16.93055 -16.56370 -16.17736 -16.01982 -15.88288 -15.08705 -14.77749 -14.71195 -14.64195 -14.29634 -14.07871 -13.88735 -13.69446 -13.43129 -13.24554 -13.17594 -12.95505 -12.81801 -12.72499 -12.63060 -12.55733 -12.10003 -11.92278 -11.84391 -11.33960 -11.22456 -11.04569 -10.98382 -10.88536 -10.74712 -10.71608 -9.76816 -9.47328 -9.30668 -9.04664 -8.85621 -8.80753 -8.66685 -8.18969 -6.45990 -6.18802 -3.88679 1.51897 2.14571 2.39767 3.09922 3.17300 3.23890 3.30982 3.36706 3.79595 3.93562 4.11610 4.21914 4.23619 4.55146 4.59416 4.70672 4.78971 4.90043 4.90905 4.94479 4.99357 5.02306 5.16468 5.23585 5.27769 5.31116 5.37982 5.40234 5.44945 5.48409 5.50357 5.65657 5.75308 5.77351 5.84803 5.90724 5.95065 6.14196 6.20134 6.27669 6.31593 6.66888 6.70097 6.77409 7.09187 7.46293 7.63220 7.81307 8.38740 8.70185 9.26824 10.88689 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.001740 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.873905 B =16091.446072 C =17528.876753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.079 3.921 3 C -0.270 4.270 4 C 0.080 3.920 5 C 0.139 3.861 6 N -0.682 5.682 7 C 0.058 3.942 8 C -0.122 4.122 9 C 0.145 3.855 10 H 0.087 0.913 11 C -0.163 4.163 12 N -0.733 5.733 13 C 0.533 3.467 14 O -0.519 6.519 15 C -0.154 4.154 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 N -0.274 5.274 26 N -0.375 5.375 27 C 0.100 3.900 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.145 0.855 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.341 0.659 35 H 0.035 0.965 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.267 0.733 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.955 -12.140 5.537 34.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.048 4.048 3 C -0.299 4.299 4 C -0.087 4.087 5 C 0.009 3.991 6 N -0.314 5.314 7 C -0.071 4.071 8 C -0.160 4.160 9 C 0.039 3.961 10 H 0.105 0.895 11 C -0.221 4.221 12 N -0.388 5.388 13 C 0.319 3.681 14 O -0.394 6.394 15 C -0.305 4.305 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 N -0.096 5.096 26 N -0.158 5.158 27 C -0.041 4.041 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.163 0.837 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.158 0.842 35 H 0.053 0.947 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.232 0.768 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.104 0.896 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -30.850 -11.765 5.604 33.490 hybrid contribution -0.092 -1.128 -0.789 1.380 sum -30.942 -12.893 4.815 33.864 Atomic orbital electron populations 1.20448 0.87392 1.03788 1.03335 1.21075 0.94627 0.87384 1.01761 1.21136 0.91780 0.98983 1.18032 1.22098 0.95073 0.91637 0.99921 1.20197 0.92334 0.95681 0.90939 1.60421 1.08779 1.52699 1.09510 1.22011 0.92853 0.94905 0.97347 1.21844 0.96948 1.00764 0.96485 1.20844 0.85424 0.96541 0.93297 0.89532 1.22169 1.02337 1.01944 0.95665 1.46130 1.23264 1.10118 1.59296 1.20285 0.82509 0.87720 0.77597 1.90692 1.77203 1.13911 1.57561 1.23539 0.99090 1.05122 1.02708 1.85370 1.18765 1.07542 1.71779 1.22922 1.08435 0.94692 1.42207 0.90890 1.24989 0.97507 0.95475 0.95634 1.70032 1.28201 1.10244 1.41859 0.86124 0.80409 0.80189 0.78821 1.19613 1.20589 1.20586 1.77424 0.95742 1.12535 1.23922 1.48504 1.03987 1.05981 1.57334 1.21834 1.00923 0.77991 1.03379 0.90180 0.89609 0.91223 0.83741 0.92947 0.89360 0.84163 0.94724 0.90298 0.90461 0.90678 0.92564 0.91670 0.92030 0.76814 0.89286 0.89302 0.92280 0.90721 0.89649 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.34 10.12 36.01 0.36 0.03 16 2 C 0.08 0.62 6.93 -82.26 -0.57 0.05 16 3 C -0.27 -2.40 10.65 -40.01 -0.43 -2.83 16 4 C 0.08 0.85 6.73 -82.40 -0.55 0.30 16 5 C 0.14 1.33 6.25 -4.97 -0.03 1.30 16 6 N -0.68 -6.35 6.49 -115.06 -0.75 -7.10 16 7 C 0.06 0.54 5.57 -3.83 -0.02 0.52 16 8 C -0.12 -1.07 5.01 -26.73 -0.13 -1.20 16 9 C 0.14 1.67 2.57 -67.93 -0.17 1.50 16 10 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 11 C -0.16 -1.82 9.48 37.16 0.35 -1.46 16 12 N -0.73 -9.83 4.53 -53.80 -0.24 -10.07 16 13 C 0.53 9.97 7.81 -10.98 -0.09 9.88 16 14 O -0.52 -11.77 15.53 5.55 0.09 -11.69 16 15 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.42 9.50 30.94 0.29 -15.13 16 18 H 0.07 2.00 7.80 -52.48 -0.41 1.60 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 21 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 N -0.27 -3.31 12.58 33.67 0.42 -2.88 16 26 N -0.38 -3.40 4.01 -63.88 -0.26 -3.66 16 27 C 0.10 0.49 11.27 59.85 0.67 1.16 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.16 7.08 -51.93 -0.37 -0.20 16 31 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.34 2.82 8.72 -39.29 -0.34 2.47 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.84 7.75 -51.92 -0.40 0.44 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.40 4.38 8.60 -40.82 -0.35 4.03 16 43 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 44 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.08 0.19 7.05 -51.93 -0.37 -0.18 16 48 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 416.30 15.07 6.27 6.27 Total: -1.00 -37.28 416.30 -9.26 -46.54 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -8.11 Total: 2.31 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -0.19 Total: -6.81 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.09 Total: -49.41 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -37.28 -9.26 -46.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320348596.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.454 kcal (2) G-P(sol) polarization free energy of solvation -37.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds