Wall clock time and date at job start Sat Apr 11 2020 06:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38568 * 119.97063 * 2 1 4 4 C 1.38819 * 118.07134 * 180.02562 * 3 2 1 5 5 C 1.39721 * 117.89886 * 359.97438 * 4 3 2 6 6 C 1.48155 * 120.18118 * 179.97438 * 5 4 3 7 7 O 1.21507 * 120.00127 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99417 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99187 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.46512 * 180.02562 * 9 8 6 11 11 C 1.38235 * 120.00277 * 269.72720 * 10 9 8 12 12 C 1.38230 * 120.00091 * 179.80910 * 11 10 9 13 13 C 1.38231 * 120.00319 * 0.42404 * 12 11 10 14 14 C 1.50700 * 120.00621 * 179.78679 * 13 12 11 15 15 H 1.08996 * 109.47430 * 160.02512 * 14 13 12 16 16 C 1.53004 * 109.47187 * 280.02377 * 14 13 12 17 17 N 1.46508 * 109.46706 * 40.02057 * 14 13 12 18 18 C 1.36935 * 119.99675 * 155.00205 * 17 14 13 19 19 H 1.07997 * 119.99886 * 0.02562 * 18 17 14 20 20 C 1.38814 * 119.99890 * 180.02562 * 18 17 14 21 21 N 1.31616 * 119.99710 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99654 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47585 * 59.99804 * 22 20 18 24 24 H 1.48507 * 109.46704 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47360 * 299.99192 * 22 20 18 26 26 C 1.38237 * 119.99544 * 359.80936 * 13 12 11 27 27 C 1.38234 * 120.00430 * 0.02562 * 26 13 12 28 28 N 1.32780 * 119.63339 * 0.02562 * 5 4 3 29 29 N 1.28350 * 122.02809 * 0.02562 * 28 5 4 30 30 H 1.08989 * 109.47046 * 269.98045 * 1 2 3 31 31 H 1.09003 * 109.46799 * 29.97980 * 1 2 3 32 32 H 1.09006 * 109.47092 * 149.97641 * 1 2 3 33 33 H 1.07998 * 120.96440 * 359.97438 * 3 2 1 34 34 H 1.08000 * 121.05109 * 179.97438 * 4 3 2 35 35 H 0.96994 * 120.00291 * 0.02562 * 8 6 5 36 36 H 1.08995 * 109.47880 * 300.00107 * 9 8 6 37 37 H 1.08994 * 109.46915 * 60.00815 * 9 8 6 38 38 H 1.08003 * 119.99468 * 0.02562 * 11 10 9 39 39 H 1.08006 * 119.99767 * 180.20835 * 12 11 10 40 40 H 1.08995 * 109.47260 * 179.97438 * 16 14 13 41 41 H 1.09000 * 109.46780 * 299.99944 * 16 14 13 42 42 H 1.09009 * 109.47129 * 59.99684 * 16 14 13 43 43 H 0.96995 * 120.00012 * 334.99984 * 17 14 13 44 44 H 0.97003 * 119.99233 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.00040 * 179.97438 * 26 13 12 46 46 H 1.07998 * 120.00443 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.2004 0.0000 4 6 3.5867 1.1544 -0.0005 5 6 4.1992 -0.1014 -0.0005 6 6 5.6768 -0.2095 -0.0017 7 8 6.3594 0.7957 -0.0031 8 7 6.2636 -1.4228 -0.0011 9 6 7.7248 -1.5296 -0.0028 10 6 8.1221 -2.9833 -0.0024 11 6 8.3113 -3.6478 1.1949 12 6 8.6718 -4.9823 1.1953 13 6 8.8518 -5.6500 -0.0016 14 6 9.2496 -7.1035 -0.0013 15 1 9.0049 -7.5474 -0.9663 16 6 10.7549 -7.2203 0.2467 17 7 8.5239 -7.8081 1.0586 18 6 8.3031 -9.1558 0.9578 19 1 8.6642 -9.6993 0.0973 20 6 7.6150 -9.8233 1.9618 21 7 7.1754 -9.1609 3.0107 22 14 7.3144 -11.6618 1.8246 23 1 8.6163 -12.3721 1.7485 24 1 6.5640 -12.1310 3.0172 25 1 6.5242 -11.9442 0.5994 26 6 8.6674 -4.9841 -1.1990 27 6 8.3034 -3.6506 -1.1994 28 7 3.4496 -1.1974 -0.0005 29 7 2.1672 -1.1451 -0.0010 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6746 2.1444 -0.0004 34 1 4.1741 2.0607 -0.0010 35 1 5.7187 -2.2252 -0.0003 36 1 8.1236 -1.0446 -0.8937 37 1 8.1256 -1.0428 0.8862 38 1 8.1739 -3.1252 2.1300 39 1 8.8164 -5.5023 2.1308 40 1 11.0425 -8.2716 0.2474 41 1 11.2948 -6.6960 -0.5418 42 1 10.9997 -6.7764 1.2118 43 1 8.2000 -7.3200 1.8316 44 1 6.6943 -9.6274 3.7121 45 1 8.8084 -5.5056 -2.1341 46 1 8.1597 -3.1303 -2.1348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326469521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:22 Heat of formation + Delta-G solvation = 53.623809 kcal Electronic energy + Delta-G solvation = -27449.773132 eV Core-core repulsion = 23532.904752 eV Total energy + Delta-G solvation = -3916.868379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.60664 -39.85922 -39.07748 -36.02856 -34.77868 -34.33384 -33.49810 -32.32792 -30.72054 -30.44431 -29.01074 -28.24757 -26.22218 -25.29440 -23.96666 -23.54576 -22.57051 -21.72078 -21.24389 -19.73358 -18.76027 -17.90503 -17.40626 -16.25092 -16.07964 -16.03218 -15.73913 -15.40708 -15.11107 -14.76627 -14.59442 -14.29388 -13.91483 -13.66682 -13.47736 -13.45385 -13.30286 -13.08861 -12.89809 -12.87381 -12.51699 -12.23485 -11.95214 -11.89197 -11.65481 -11.14796 -10.90095 -10.81205 -10.74340 -10.60121 -10.47695 -10.29485 -10.19304 -10.16243 -9.99629 -9.66468 -9.31162 -8.96034 -8.62115 -8.31711 -6.98559 -5.77070 -3.05860 0.02483 0.31713 1.46296 1.70934 2.30163 2.82537 3.25182 3.43656 3.44686 3.48932 3.49874 3.89173 4.03924 4.11163 4.25442 4.48774 4.53372 4.59481 4.70072 4.93655 4.97953 5.02629 5.19478 5.22883 5.30854 5.36534 5.40225 5.49268 5.55134 5.57412 5.70325 5.73493 5.79766 5.97401 6.03506 6.12153 6.26586 6.32512 6.36947 6.51688 6.63357 6.72947 6.78289 6.96485 7.17637 7.20696 7.29733 7.69375 7.80708 8.16644 8.41221 9.52500 10.08068 10.43365 11.45511 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011238 B = 0.002251 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.905654 B =12436.021896 C =14387.852216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.084 3.916 3 C -0.124 4.124 4 C -0.062 4.062 5 C 0.016 3.984 6 C 0.576 3.424 7 O -0.534 6.534 8 N -0.699 5.699 9 C 0.166 3.834 10 C -0.133 4.133 11 C -0.097 4.097 12 C -0.106 4.106 13 C -0.052 4.052 14 C 0.203 3.797 15 H 0.056 0.944 16 C -0.159 4.159 17 N -0.721 5.721 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.121 4.121 27 C -0.100 4.100 28 N -0.201 5.201 29 N -0.238 5.238 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.416 0.584 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.057 0.943 41 H 0.038 0.962 42 H 0.048 0.952 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.121 0.879 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.764 23.891 -7.626 26.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.059 4.059 3 C -0.153 4.153 4 C -0.091 4.091 5 C -0.130 4.130 6 C 0.358 3.642 7 O -0.410 6.410 8 N -0.350 5.350 9 C 0.044 3.956 10 C -0.134 4.134 11 C -0.115 4.115 12 C -0.124 4.124 13 C -0.053 4.053 14 C 0.094 3.906 15 H 0.074 0.926 16 C -0.220 4.220 17 N -0.363 5.363 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.140 4.140 27 C -0.119 4.119 28 N -0.047 5.047 29 N -0.083 5.083 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.253 0.747 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.220 0.780 44 H 0.066 0.934 45 H 0.139 0.861 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.307 22.757 -7.655 25.097 hybrid contribution -0.514 0.264 0.308 0.655 sum -7.821 23.021 -7.347 25.399 Atomic orbital electron populations 1.20766 0.86912 1.04503 1.04098 1.23166 0.99531 0.90466 0.92735 1.22330 0.94233 1.00203 0.98546 1.22444 0.95080 0.99147 0.92426 1.22839 0.96433 0.92156 1.01599 1.17552 0.85202 0.84081 0.77314 1.90797 1.63558 1.36085 1.50517 1.46056 1.08204 1.08370 1.72419 1.20247 0.78929 0.93416 1.03038 1.19596 1.05149 0.94668 0.93960 1.21013 0.98793 0.94709 0.97020 1.21082 0.98864 0.93724 0.98723 1.20540 0.95043 0.96889 0.92807 1.19256 0.91189 0.86273 0.93918 0.92605 1.22422 0.97860 1.01491 1.00189 1.42512 1.65953 1.06189 1.21676 1.19192 1.29609 0.84366 1.03973 0.91134 1.24739 1.01023 0.98051 0.97016 1.69648 1.42996 1.35046 1.10315 0.86262 0.77762 0.85293 0.76825 1.21273 1.21698 1.21243 1.21011 1.00888 0.94271 0.97820 1.20917 0.99438 0.94602 0.96918 1.73270 0.99862 1.26020 1.05577 1.73161 1.00795 1.24498 1.09820 0.89300 0.89916 0.89449 0.82449 0.81925 0.74702 0.90442 0.90368 0.86298 0.85339 0.92390 0.94316 0.93318 0.77981 0.93412 0.86088 0.86459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.46 10.19 36.01 0.37 -0.10 16 2 C 0.08 0.67 6.87 -82.32 -0.57 0.10 16 3 C -0.12 -0.78 9.86 -39.24 -0.39 -1.16 16 4 C -0.06 -0.51 9.73 -38.81 -0.38 -0.89 16 5 C 0.02 0.18 6.83 -82.83 -0.57 -0.38 16 6 C 0.58 7.11 7.82 -12.19 -0.10 7.02 16 7 O -0.53 -7.55 16.39 5.36 0.09 -7.46 16 8 N -0.70 -8.26 5.54 -62.33 -0.35 -8.60 16 9 C 0.17 1.89 5.80 -5.19 -0.03 1.86 16 10 C -0.13 -1.72 5.25 -104.62 -0.55 -2.26 16 11 C -0.10 -1.38 9.70 -39.59 -0.38 -1.77 16 12 C -0.11 -1.79 9.05 -39.59 -0.36 -2.15 16 13 C -0.05 -0.90 4.95 -104.62 -0.52 -1.42 16 14 C 0.20 4.05 3.09 -69.08 -0.21 3.84 16 15 H 0.06 1.12 7.94 -51.93 -0.41 0.71 16 16 C -0.16 -2.88 9.47 37.16 0.35 -2.53 16 17 N -0.72 -17.93 5.07 -54.55 -0.28 -18.21 16 18 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 22 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 C -0.12 -1.80 9.67 -39.58 -0.38 -2.19 16 27 C -0.10 -1.30 9.70 -39.58 -0.38 -1.69 16 28 N -0.20 -2.53 10.75 33.32 0.36 -2.17 16 29 N -0.24 -2.79 11.43 33.63 0.38 -2.41 16 30 H 0.09 0.31 8.14 -51.94 -0.42 -0.11 16 31 H 0.08 0.17 8.09 -51.93 -0.42 -0.25 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.16 0.37 8.06 -52.49 -0.42 -0.05 16 34 H 0.16 1.09 7.72 -52.49 -0.41 0.68 16 35 H 0.42 5.02 7.82 -40.82 -0.32 4.70 16 36 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 37 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 38 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 39 H 0.13 2.34 6.92 -52.48 -0.36 1.98 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 43 H 0.39 10.09 6.07 -40.82 -0.25 9.84 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 45 H 0.12 1.60 8.04 -52.49 -0.42 1.18 16 46 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -33.50 396.31 -8.81 -42.32 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -6.36 Total: 11.49 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -4.34 Total: -10.94 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.85 Total: -58.74 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.09 Total: -7.46 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.50 -8.81 -42.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326469521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.940 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds