Wall clock time and date at job start Sat Apr 11 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38280 * 119.92894 * 2 1 4 4 C 1.38112 * 120.07527 * 180.02562 * 3 2 1 5 5 C 1.38879 * 119.92541 * 0.02562 * 4 3 2 6 6 N 1.39922 * 120.07177 * 180.02562 * 5 4 3 7 7 C 1.46501 * 119.99691 * 7.87668 * 6 5 4 8 8 C 1.50702 * 109.47389 * 267.42573 * 7 6 5 9 9 H 1.07997 * 119.99857 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00251 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99898 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00294 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47180 * 89.99638 * 12 10 8 14 14 H 1.48504 * 109.47380 * 210.00132 * 12 10 8 15 15 H 1.48500 * 109.46889 * 329.99739 * 12 10 8 16 16 C 1.34774 * 120.00125 * 187.88119 * 6 5 4 17 17 O 1.21281 * 120.00054 * 5.94083 * 16 6 5 18 18 C 1.50701 * 119.99914 * 185.93875 * 16 6 5 19 19 H 1.09001 * 109.74885 * 305.99397 * 18 16 6 20 20 C 1.53298 * 109.75848 * 185.46666 * 18 16 6 21 21 C 1.53155 * 109.37955 * 191.87665 * 20 18 16 22 22 C 1.53307 * 109.48210 * 69.05287 * 21 20 18 23 23 N 1.46293 * 108.76994 * 309.85638 * 22 21 20 24 24 N 1.39764 * 128.31174 * 197.08256 * 23 22 21 25 25 C 1.30965 * 106.58403 * 179.86051 * 24 23 22 26 26 N 1.33476 * 109.01156 * 0.03605 * 25 24 23 27 27 C 1.30339 * 109.72056 * 0.02562 * 26 25 24 28 28 C 1.38872 * 119.85685 * 0.27164 * 5 4 3 29 29 C 1.38112 * 119.93163 * 359.47538 * 28 5 4 30 30 H 1.09008 * 109.47375 * 89.99831 * 1 2 3 31 31 H 1.09000 * 109.47200 * 209.99360 * 1 2 3 32 32 H 1.08995 * 109.47336 * 329.99692 * 1 2 3 33 33 H 1.08007 * 119.96265 * 0.02562 * 3 2 1 34 34 H 1.07993 * 120.04088 * 179.97438 * 4 3 2 35 35 H 1.08995 * 109.47381 * 27.42570 * 7 6 5 36 36 H 1.09001 * 109.46982 * 147.42385 * 7 6 5 37 37 H 0.97004 * 119.99796 * 179.97438 * 11 10 8 38 38 H 1.09007 * 109.55189 * 71.83542 * 20 18 16 39 39 H 1.08996 * 109.33206 * 311.78425 * 20 18 16 40 40 H 1.09001 * 109.46828 * 309.04734 * 21 20 18 41 41 H 1.09002 * 109.47102 * 189.05895 * 21 20 18 42 42 H 1.09001 * 109.58584 * 190.06911 * 22 21 20 43 43 H 1.08996 * 109.58733 * 69.64172 * 22 21 20 44 44 H 1.08001 * 125.49771 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.03399 * 179.72371 * 28 5 4 46 46 H 1.07998 * 119.96685 * 180.25281 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0001 -0.0016 6 7 5.6731 0.0001 -0.0016 7 6 6.4055 1.2567 0.1734 8 6 6.7120 1.8518 -1.1768 9 1 6.3934 1.3445 -2.0754 10 6 7.3999 3.0434 -1.2650 11 7 7.7883 3.6610 -0.1707 12 14 7.7792 3.7815 -2.9385 13 1 6.6687 4.6787 -3.3470 14 1 9.0417 4.5596 -2.8619 15 1 7.9287 2.6927 -3.9372 16 6 6.3470 -1.1559 -0.1627 17 8 5.7455 -2.1784 -0.4149 18 6 7.8479 -1.1780 -0.0294 19 1 8.2877 -0.4349 -0.6946 20 6 8.3798 -2.5699 -0.3895 21 6 9.8497 -2.6758 0.0274 22 6 9.9480 -2.6841 1.5572 23 7 9.1707 -1.5627 2.0849 24 7 9.2315 -0.9893 3.3581 25 6 8.3569 -0.0146 3.3713 26 7 7.7577 0.0480 2.1802 27 6 8.2367 -0.8777 1.3977 28 6 3.5780 -1.2017 -0.0079 29 6 2.1969 -1.1984 -0.0020 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3634 0.8899 0.5138 33 1 1.6551 2.1327 0.0004 34 1 4.1162 2.1382 -0.0010 35 1 5.7973 1.9548 0.7485 36 1 7.3372 1.0632 0.7051 37 1 8.2727 4.4991 -0.2327 38 1 8.2942 -2.7262 -1.4649 39 1 7.7969 -3.3261 0.1363 40 1 10.4017 -1.8229 -0.3676 41 1 10.2742 -3.5982 -0.3690 42 1 10.9907 -2.5792 1.8570 43 1 9.5468 -3.6208 1.9441 44 1 8.1532 0.6339 4.2106 45 1 4.1163 -2.1380 -0.0132 46 1 1.6552 -2.1327 -0.0027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362009748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:45 Heat of formation + Delta-G solvation = 85.283342 kcal Electronic energy + Delta-G solvation = -30554.807731 eV Core-core repulsion = 26639.312212 eV Total energy + Delta-G solvation = -3915.495519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.51109 -41.70047 -39.62115 -37.76258 -36.98345 -34.77469 -34.44843 -32.56463 -31.78815 -31.55320 -30.76033 -29.31099 -27.51109 -25.78978 -25.15496 -23.95512 -23.22993 -23.14838 -22.40400 -20.91795 -20.00647 -18.72569 -18.55431 -18.14258 -17.51151 -17.23172 -16.50640 -16.32773 -16.20322 -16.01369 -15.72915 -15.42720 -15.17662 -14.85812 -14.54076 -14.45358 -14.35433 -14.23147 -13.93703 -13.46282 -13.28369 -13.19119 -13.13465 -12.94809 -12.82074 -12.64134 -12.60133 -12.42489 -12.20185 -12.08707 -11.91541 -11.88111 -11.76590 -11.01979 -10.84359 -10.62057 -10.58836 -10.28232 -10.19524 -9.76826 -8.60559 -8.14359 -6.32419 0.33970 0.51444 0.58026 1.25485 1.38512 1.40666 1.49697 1.66058 1.84286 2.17910 2.40942 2.92202 3.03988 3.12042 3.24640 3.45414 3.53728 3.90669 3.94775 4.09719 4.12790 4.14158 4.26043 4.28664 4.31824 4.50685 4.60072 4.62096 4.65416 4.75313 4.86328 4.93534 4.96165 4.97635 5.04227 5.20183 5.20664 5.28645 5.31738 5.34222 5.50539 5.55434 5.56896 5.72038 5.78826 5.82475 5.94067 6.08697 6.32168 6.48574 6.82332 7.07293 7.11986 7.36785 8.87232 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008006 B = 0.005428 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3496.360852 B = 5157.591661 C = 7128.559845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.123 4.123 3 C -0.104 4.104 4 C -0.160 4.160 5 C 0.133 3.867 6 N -0.523 5.523 7 C 0.233 3.767 8 C -0.551 4.551 9 H 0.047 0.953 10 C 0.027 3.973 11 N -0.912 5.912 12 Si 0.952 3.048 13 H -0.278 1.278 14 H -0.278 1.278 15 H -0.267 1.267 16 C 0.525 3.475 17 O -0.550 6.550 18 C -0.026 4.026 19 H 0.126 0.874 20 C -0.104 4.104 21 C -0.126 4.126 22 C 0.114 3.886 23 N -0.368 5.368 24 N -0.328 5.328 25 C 0.185 3.815 26 N -0.548 5.548 27 C 0.276 3.724 28 C -0.184 4.184 29 C -0.105 4.105 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.140 0.860 34 H 0.111 0.889 35 H 0.009 0.991 36 H 0.095 0.905 37 H 0.266 0.734 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.145 0.855 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.239 0.761 45 H 0.160 0.840 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.671 -12.242 1.336 12.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.180 4.180 5 C 0.038 3.962 6 N -0.240 5.240 7 C 0.113 3.887 8 C -0.590 4.590 9 H 0.065 0.935 10 C -0.174 4.174 11 N -0.550 5.550 12 Si 0.777 3.223 13 H -0.203 1.203 14 H -0.204 1.204 15 H -0.192 1.192 16 C 0.314 3.686 17 O -0.431 6.431 18 C -0.050 4.050 19 H 0.144 0.856 20 C -0.143 4.143 21 C -0.164 4.164 22 C -0.006 4.006 23 N -0.160 5.160 24 N -0.157 5.157 25 C -0.117 4.117 26 N -0.276 5.276 27 C -0.001 4.001 28 C -0.204 4.204 29 C -0.123 4.123 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.158 0.842 34 H 0.129 0.871 35 H 0.027 0.973 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.163 0.837 42 H 0.134 0.866 43 H 0.125 0.875 44 H 0.255 0.745 45 H 0.177 0.823 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.496 -12.620 1.830 12.761 hybrid contribution 0.371 1.392 -0.707 1.605 sum -0.125 -11.228 1.123 11.284 Atomic orbital electron populations 1.20729 0.88567 1.03530 1.02884 1.20227 0.97819 0.92354 1.01975 1.21048 0.92268 0.98982 0.99929 1.21053 0.95451 0.96525 1.05009 1.18403 0.82973 0.95185 0.99639 1.45866 1.04370 1.10173 1.63599 1.19920 0.94148 0.78567 0.96062 1.21662 1.36975 1.07509 0.92821 0.93514 1.25576 0.95205 0.96775 0.99878 1.70071 1.38631 1.17380 1.28949 0.85653 0.77766 0.78647 0.80250 1.20348 1.20366 1.19159 1.20372 0.89817 0.82343 0.76048 1.90316 1.68824 1.33922 1.50057 1.20184 0.92564 1.03491 0.88719 0.85636 1.21641 0.96590 0.91455 1.04565 1.22073 0.95495 1.06879 0.91908 1.22414 0.97141 0.85877 0.95185 1.50595 1.29985 1.27036 1.08364 1.77799 1.24805 1.14004 0.99042 1.26662 0.92060 0.96286 0.96655 1.70518 1.30671 1.22871 1.03531 1.23662 0.90318 0.90192 0.95896 1.22400 0.95633 0.98603 1.03749 1.21223 0.92869 0.98639 0.99601 0.90563 0.90467 0.90809 0.84177 0.87129 0.97328 0.88802 0.92509 0.87743 0.90210 0.90331 0.83736 0.86567 0.87514 0.74506 0.82292 0.83749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.09 10.01 71.23 0.71 -1.38 16 2 C -0.12 -3.75 5.88 -19.84 -0.12 -3.86 16 3 C -0.10 -3.61 9.69 22.25 0.22 -3.39 16 4 C -0.16 -6.92 9.15 22.39 0.20 -6.71 16 5 C 0.13 6.02 6.49 38.15 0.25 6.27 16 6 N -0.52 -24.47 2.65 -635.31 -1.68 -26.16 16 7 C 0.23 11.97 3.58 85.63 0.31 12.27 16 8 C -0.55 -29.81 9.07 25.60 0.23 -29.57 16 9 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 10 C 0.03 1.43 5.46 84.65 0.46 1.89 16 11 N -0.91 -51.62 13.29 21.45 0.28 -51.34 16 12 Si 0.95 42.49 29.54 68.60 2.03 44.51 16 13 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 14 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 16 C 0.52 22.24 6.83 87.66 0.60 22.84 16 17 O -0.55 -23.24 12.27 -3.03 -0.04 -23.27 16 18 C -0.03 -0.92 2.09 -12.11 -0.03 -0.95 16 19 H 0.13 4.84 7.54 -2.39 -0.02 4.82 16 20 C -0.10 -2.53 4.81 30.75 0.15 -2.38 16 21 C -0.13 -2.04 5.95 30.75 0.18 -1.85 16 22 C 0.11 2.17 7.30 86.52 0.63 2.80 16 23 N -0.37 -11.42 4.04 -338.34 -1.37 -12.78 16 24 N -0.33 -11.07 12.74 -60.97 -0.78 -11.84 16 25 C 0.18 6.59 13.04 180.62 2.35 8.95 16 26 N -0.55 -22.99 7.86 -191.33 -1.50 -24.49 16 27 C 0.28 10.29 6.51 138.36 0.90 11.19 16 28 C -0.18 -7.44 8.97 22.39 0.20 -7.24 16 29 C -0.10 -3.44 9.69 22.25 0.22 -3.23 16 30 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.08 1.36 8.08 -2.39 -0.02 1.34 16 32 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 33 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 34 H 0.11 5.31 6.31 -2.91 -0.02 5.30 16 35 H 0.01 0.49 6.42 -2.39 -0.02 0.48 16 36 H 0.09 4.91 3.67 -2.39 -0.01 4.90 16 37 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 38 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.08 2.01 7.60 -2.39 -0.02 1.99 16 40 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 41 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.24 6.71 8.06 -2.91 -0.02 6.68 16 45 H 0.16 6.68 4.72 -45.31 -0.21 6.47 16 46 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -72.12 369.77 5.23 -66.89 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.81 Total: 32.84 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 7.47 Total: 5.64 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -5.04 Total: -126.61 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.04 Total: -23.27 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -72.12 5.23 -66.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362009748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.175 kcal (2) G-P(sol) polarization free energy of solvation -72.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds