Wall clock time and date at job start Sat Apr 11 2020 06:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33474 * 125.49702 * 2 1 4 4 C 1.30328 * 109.72839 * 179.97438 * 3 2 1 5 5 N 1.34681 * 108.04087 * 0.05659 * 4 3 2 6 6 N 1.30973 * 125.49892 * 179.97438 * 2 1 3 7 7 C 1.46298 * 125.04508 * 179.88679 * 5 4 3 8 8 C 1.53304 * 108.77454 * 342.99065 * 7 5 4 9 9 H 1.09005 * 109.46994 * 290.13124 * 8 7 5 10 10 N 1.46499 * 109.47304 * 170.13716 * 8 7 5 11 11 C 1.34780 * 119.99872 * 84.98889 * 10 8 7 12 12 O 1.21281 * 119.99940 * 0.02562 * 11 10 8 13 13 C 1.50695 * 119.99846 * 180.02562 * 11 10 8 14 14 H 1.09000 * 109.47137 * 300.00349 * 13 11 10 15 15 C 1.50701 * 109.47326 * 60.00249 * 13 11 10 16 16 H 1.07997 * 120.00116 * 235.33812 * 15 13 11 17 17 C 1.37873 * 119.99781 * 55.33996 * 15 13 11 18 18 N 1.31518 * 120.00079 * 1.96285 * 17 15 13 19 19 Si 1.86802 * 120.00128 * 181.96240 * 17 15 13 20 20 H 1.48506 * 109.46946 * 89.99640 * 19 17 15 21 21 H 1.48492 * 109.47334 * 209.99946 * 19 17 15 22 22 H 1.48503 * 109.47079 * 330.00410 * 19 17 15 23 23 C 1.50699 * 109.47156 * 180.02562 * 13 11 10 24 24 C 1.38233 * 119.99745 * 227.23055 * 23 13 11 25 25 C 1.38245 * 119.99749 * 179.97438 * 24 23 13 26 26 C 1.38227 * 120.00109 * 0.09058 * 25 24 23 27 27 C 1.38245 * 119.99931 * 359.86441 * 26 25 24 28 28 C 1.38231 * 119.99927 * 0.08961 * 27 26 25 29 29 C 1.53161 * 109.48452 * 50.13333 * 8 7 5 30 30 C 1.50925 * 127.90777 * 180.10620 * 4 3 2 31 31 H 1.08996 * 109.47033 * 270.00371 * 1 2 3 32 32 H 1.09002 * 109.47195 * 30.00037 * 1 2 3 33 33 H 1.08996 * 109.47297 * 150.00217 * 1 2 3 34 34 H 1.08999 * 109.59054 * 223.20401 * 7 5 4 35 35 H 1.09007 * 109.58645 * 102.77265 * 7 5 4 36 36 H 0.96999 * 119.99755 * 264.99762 * 10 8 7 37 37 H 0.96996 * 119.99977 * 180.02562 * 18 17 15 38 38 H 1.07992 * 120.00454 * 359.69704 * 24 23 13 39 39 H 1.08003 * 119.99902 * 179.97438 * 25 24 23 40 40 H 1.08004 * 120.00073 * 179.97438 * 26 25 24 41 41 H 1.07994 * 119.99465 * 180.02562 * 27 26 25 42 42 H 1.08003 * 120.00257 * 179.97438 * 28 27 26 43 43 H 1.09001 * 109.50635 * 50.75228 * 29 8 7 44 44 H 1.09000 * 109.51051 * 170.88245 * 29 8 7 45 45 H 1.08999 * 109.71555 * 283.69776 * 30 4 3 46 46 H 1.09000 * 109.71412 * 44.29575 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5362 0.7325 0.0005 5 7 3.5896 -0.6132 -0.0003 6 7 2.2675 -1.0663 0.0005 7 6 4.8198 -1.4052 -0.0025 8 6 5.9854 -0.5050 -0.4281 9 1 5.8849 -0.2555 -1.4845 10 7 7.2512 -1.2097 -0.2111 11 6 7.7250 -2.0495 -1.1529 12 8 7.1035 -2.2213 -2.1801 13 6 9.0268 -2.7749 -0.9295 14 1 9.8290 -2.0491 -0.7962 15 6 8.9176 -3.6348 0.3033 16 1 9.6318 -3.5218 1.1055 17 6 7.9060 -4.5658 0.4070 18 7 7.0594 -4.7304 -0.5860 19 14 7.7376 -5.5934 1.9579 20 1 6.8536 -4.8917 2.9231 21 1 7.1485 -6.9129 1.6159 22 1 9.0770 -5.7923 2.5677 23 6 9.3291 -3.6436 -2.1232 24 6 9.7199 -4.9570 -1.9410 25 6 9.9967 -5.7540 -3.0361 26 6 9.8845 -5.2371 -4.3132 27 6 9.4928 -3.9239 -4.4954 28 6 9.2151 -3.1272 -3.4004 29 6 5.9680 0.7809 0.4039 30 6 4.7522 1.6265 0.0030 31 1 -0.3633 0.0001 1.0276 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 4.7209 -2.2320 -0.7059 35 1 5.0055 -1.7945 0.9986 36 1 7.7483 -1.0721 0.6103 37 1 6.3475 -5.3851 -0.5129 38 1 9.8132 -5.3591 -0.9431 39 1 10.3024 -6.7801 -2.8937 40 1 10.1012 -5.8597 -5.1687 41 1 9.4049 -3.5203 -5.4932 42 1 8.9095 -2.1012 -3.5427 43 1 5.9029 0.5287 1.4623 44 1 6.8814 1.3463 0.2193 45 1 4.9054 2.0416 -0.9932 46 1 4.6128 2.4349 0.7207 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435021650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:56 Heat of formation + Delta-G solvation = 53.574017 kcal Electronic energy + Delta-G solvation = -29885.777331 eV Core-core repulsion = 25968.906792 eV Total energy + Delta-G solvation = -3916.870539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.41684 -40.86995 -39.44344 -37.95100 -35.49409 -34.64958 -34.25545 -32.67803 -32.14938 -31.34438 -30.44119 -29.32957 -28.18963 -25.82459 -25.19364 -23.66894 -22.94343 -22.23063 -21.67366 -21.04040 -20.53063 -18.63815 -17.97924 -17.49515 -17.36543 -17.00705 -16.70170 -16.55456 -16.04360 -15.66153 -15.35647 -15.25976 -15.16672 -14.86079 -14.46097 -14.30476 -14.04901 -13.95113 -13.81903 -13.71830 -13.50654 -13.37830 -13.03391 -12.88739 -12.78590 -12.72061 -12.55418 -12.29286 -12.12526 -12.03100 -11.77165 -11.41945 -11.18009 -11.14952 -10.79191 -10.66584 -10.39368 -10.20680 -9.86550 -9.37393 -9.09464 -8.09035 -6.27668 0.54994 0.87877 0.93454 1.16635 1.37436 1.45285 1.50291 1.77491 2.27545 2.41689 2.62451 2.91578 3.18970 3.28423 3.35964 3.53766 3.69669 3.84139 3.94277 4.16056 4.33442 4.34924 4.35870 4.43462 4.49418 4.52857 4.68492 4.68949 4.74109 4.81706 4.83931 4.93705 4.97126 5.01898 5.05587 5.12645 5.18168 5.28001 5.44976 5.46227 5.54993 5.67759 5.71424 5.85859 5.90437 5.95354 5.98565 6.42707 6.53719 6.75530 7.03091 7.03614 7.41879 7.87566 8.88653 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012871 B = 0.003554 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.967387 B = 7875.510327 C = 8636.047144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.204 3.796 3 N -0.558 5.558 4 C 0.273 3.727 5 N -0.379 5.379 6 N -0.365 5.365 7 C 0.130 3.870 8 C 0.150 3.850 9 H 0.075 0.925 10 N -0.714 5.714 11 C 0.552 3.448 12 O -0.578 6.578 13 C 0.049 3.951 14 H 0.077 0.923 15 C -0.529 4.529 16 H 0.076 0.924 17 C 0.045 3.955 18 N -0.871 5.871 19 Si 0.930 3.070 20 H -0.281 1.281 21 H -0.301 1.301 22 H -0.259 1.259 23 C -0.036 4.036 24 C -0.086 4.086 25 C -0.154 4.154 26 C -0.143 4.143 27 C -0.149 4.149 28 C -0.116 4.116 29 C -0.122 4.122 30 C -0.031 4.031 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.414 0.586 37 H 0.252 0.748 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.130 0.870 45 H 0.119 0.881 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.964 11.943 2.314 12.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.078 4.078 3 N -0.288 5.288 4 C -0.002 4.002 5 N -0.169 5.169 6 N -0.194 5.194 7 C 0.006 3.994 8 C 0.042 3.958 9 H 0.093 0.907 10 N -0.366 5.366 11 C 0.342 3.658 12 O -0.457 6.457 13 C 0.028 3.972 14 H 0.095 0.905 15 C -0.566 4.566 16 H 0.094 0.906 17 C -0.159 4.159 18 N -0.506 5.506 19 Si 0.757 3.243 20 H -0.207 1.207 21 H -0.228 1.228 22 H -0.183 1.183 23 C -0.037 4.037 24 C -0.104 4.104 25 C -0.172 4.172 26 C -0.161 4.161 27 C -0.167 4.167 28 C -0.134 4.134 29 C -0.160 4.160 30 C -0.070 4.070 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.250 0.750 37 H 0.062 0.938 38 H 0.131 0.869 39 H 0.141 0.859 40 H 0.153 0.847 41 H 0.146 0.854 42 H 0.121 0.879 43 H 0.106 0.894 44 H 0.148 0.852 45 H 0.137 0.863 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.875 11.212 1.513 11.467 hybrid contribution -0.317 -1.578 1.043 1.918 sum -2.192 9.634 2.556 10.205 Atomic orbital electron populations 1.20233 0.81151 1.04883 1.04871 1.25279 0.99951 0.85175 0.97388 1.70199 1.00295 1.30901 1.27397 1.25297 0.96262 0.83857 0.94831 1.50208 1.05319 1.06681 1.54739 1.77914 0.87847 1.24598 1.29071 1.22244 0.79806 0.94782 1.02520 1.20918 0.82347 0.91512 1.00976 0.90672 1.45615 1.21892 1.46548 1.22583 1.21128 0.88048 0.75372 0.81272 1.90547 1.61535 1.63457 1.30156 1.17992 0.91419 0.94242 0.93517 0.90475 1.20917 1.13663 1.19887 1.02173 0.90622 1.25471 0.95646 0.97522 0.97281 1.70220 1.15746 1.33544 1.31074 0.85980 0.78706 0.78236 0.81347 1.20694 1.22820 1.18308 1.19959 0.94611 0.95113 0.94055 1.21139 0.97110 0.93679 0.98521 1.21307 1.02791 0.99841 0.93255 1.21167 1.02110 0.95721 0.97109 1.21198 1.01942 0.94961 0.98556 1.21050 0.99513 0.99826 0.93058 1.22038 1.00302 0.93315 1.00323 1.20621 0.84191 0.95404 1.06818 0.88365 0.88028 0.89658 0.92475 0.90107 0.74961 0.93830 0.86947 0.85863 0.84742 0.85445 0.87893 0.89407 0.85217 0.86336 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.10 10.51 71.24 0.75 -0.36 16 2 C 0.20 6.52 8.15 138.48 1.13 7.64 16 3 N -0.56 -17.44 11.18 -179.31 -2.01 -19.45 16 4 C 0.27 7.98 7.72 138.36 1.07 9.04 16 5 N -0.38 -13.40 4.04 -338.33 -1.37 -14.77 16 6 N -0.36 -13.92 12.74 -51.08 -0.65 -14.57 16 7 C 0.13 4.75 6.87 86.52 0.59 5.34 16 8 C 0.15 4.43 2.47 45.15 0.11 4.54 16 9 H 0.08 2.52 7.56 -2.38 -0.02 2.50 16 10 N -0.71 -23.53 4.98 -441.79 -2.20 -25.73 16 11 C 0.55 23.56 5.42 87.65 0.47 24.03 16 12 O -0.58 -29.12 13.62 -3.03 -0.04 -29.16 16 13 C 0.05 2.13 2.77 -13.03 -0.04 2.10 16 14 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 15 C -0.53 -23.70 7.12 25.60 0.18 -23.52 16 16 H 0.08 3.23 7.81 -2.91 -0.02 3.21 16 17 C 0.05 2.18 4.00 84.65 0.34 2.51 16 18 N -0.87 -46.43 10.89 21.45 0.23 -46.20 16 19 Si 0.93 39.49 29.54 68.60 2.03 41.51 16 20 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 23 C -0.04 -1.66 4.52 -19.87 -0.09 -1.75 16 24 C -0.09 -3.91 8.19 22.27 0.18 -3.72 16 25 C -0.15 -6.13 10.05 22.27 0.22 -5.90 16 26 C -0.14 -5.26 10.05 22.27 0.22 -5.04 16 27 C -0.15 -5.73 10.05 22.27 0.22 -5.51 16 28 C -0.12 -5.04 8.21 22.27 0.18 -4.86 16 29 C -0.12 -2.16 5.43 30.79 0.17 -1.99 16 30 C -0.03 -0.54 6.33 30.06 0.19 -0.35 16 31 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.08 2.96 8.14 -2.38 -0.02 2.94 16 36 H 0.41 11.54 8.49 -92.71 -0.79 10.75 16 37 H 0.25 13.77 8.31 -92.71 -0.77 12.99 16 38 H 0.11 5.30 6.03 -2.91 -0.02 5.28 16 39 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 40 H 0.13 3.96 8.06 -2.91 -0.02 3.93 16 41 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 42 H 0.10 4.43 7.01 -2.91 -0.02 4.41 16 43 H 0.09 1.45 8.12 -2.39 -0.02 1.43 16 44 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -70.71 376.95 2.13 -68.58 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: 0.22 Total: 37.56 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 5.91 Total: 2.21 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -5.99 Total: -120.72 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.04 Total: -29.16 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.51 kcal Total: -70.71 2.13 -68.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435021650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.158 kcal (2) G-P(sol) polarization free energy of solvation -70.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds