Wall clock time and date at job start Sat Apr 11 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33478 * 125.49889 * 2 1 4 4 C 1.30322 * 109.72520 * 180.02562 * 3 2 1 5 5 N 1.34679 * 108.05064 * 359.95960 * 4 3 2 6 6 N 1.30976 * 125.49881 * 180.02562 * 2 1 3 7 7 C 1.46294 * 125.05067 * 180.02562 * 5 4 3 8 8 C 1.53303 * 108.78131 * 16.99404 * 7 5 4 9 9 H 1.08996 * 109.45746 * 69.89675 * 8 7 5 10 10 N 1.46496 * 109.47144 * 189.88899 * 8 7 5 11 11 C 1.34777 * 119.99830 * 275.02718 * 10 8 7 12 12 O 1.21276 * 119.99946 * 359.97438 * 11 10 8 13 13 C 1.50700 * 120.00036 * 179.97438 * 11 10 8 14 14 H 1.08999 * 109.47152 * 299.99856 * 13 11 10 15 15 C 1.50704 * 109.46789 * 59.99881 * 13 11 10 16 16 H 1.07999 * 119.99920 * 33.92815 * 15 13 11 17 17 C 1.37881 * 119.99755 * 213.92412 * 15 13 11 18 18 N 1.31516 * 119.99907 * 6.39082 * 17 15 13 19 19 Si 1.86795 * 120.00004 * 186.39079 * 17 15 13 20 20 H 1.48504 * 109.47268 * 89.99952 * 19 17 15 21 21 H 1.48503 * 109.47284 * 210.00359 * 19 17 15 22 22 H 1.48503 * 109.46982 * 330.00292 * 19 17 15 23 23 C 1.50697 * 109.46981 * 179.97438 * 13 11 10 24 24 C 1.38238 * 120.00282 * 293.84598 * 23 13 11 25 25 C 1.38230 * 120.00198 * 179.76793 * 24 23 13 26 26 C 1.38238 * 119.99630 * 0.48678 * 25 24 23 27 27 C 1.38234 * 120.00483 * 359.78868 * 26 25 24 28 28 C 1.38236 * 119.99612 * 114.12509 * 23 13 11 29 29 C 1.53169 * 109.49126 * 309.89687 * 8 7 5 30 30 C 1.50932 * 127.90167 * 179.87786 * 4 3 2 31 31 H 1.08999 * 109.47106 * 89.96790 * 1 2 3 32 32 H 1.08992 * 109.47062 * 209.97607 * 1 2 3 33 33 H 1.08998 * 109.47233 * 329.97350 * 1 2 3 34 34 H 1.09009 * 109.58270 * 257.20726 * 7 5 4 35 35 H 1.08994 * 109.58730 * 136.78736 * 7 5 4 36 36 H 0.96994 * 120.00161 * 95.02468 * 10 8 7 37 37 H 0.96995 * 119.99872 * 179.97438 * 18 17 15 38 38 H 1.08001 * 119.99727 * 0.02562 * 24 23 13 39 39 H 1.07998 * 120.00589 * 180.25315 * 25 24 23 40 40 H 1.08006 * 119.99778 * 179.76686 * 26 25 24 41 41 H 1.07996 * 120.00604 * 179.97438 * 27 26 25 42 42 H 1.08000 * 120.00107 * 359.97438 * 28 23 13 43 43 H 1.08996 * 109.50325 * 189.10172 * 29 8 7 44 44 H 1.08990 * 109.50890 * 309.23638 * 29 8 7 45 45 H 1.08996 * 109.71746 * 76.38251 * 30 4 3 46 46 H 1.09002 * 109.71436 * 315.73500 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5362 0.7324 -0.0005 5 7 3.5897 -0.6133 0.0000 6 7 2.2675 -1.0663 -0.0005 7 6 4.8198 -1.4052 0.0002 8 6 5.9862 -0.5052 0.4239 9 1 5.8875 -0.2563 1.4805 10 7 7.2516 -1.2099 0.2043 11 6 7.7269 -2.0503 1.1447 12 8 7.1073 -2.2226 2.1729 13 6 9.0283 -2.7757 0.9186 14 1 8.9477 -3.3971 0.0267 15 6 10.1371 -1.7721 0.7331 16 1 10.1136 -0.8358 1.2709 17 6 11.1817 -2.0492 -0.1232 18 7 11.1491 -3.1299 -0.8720 19 14 12.6431 -0.8898 -0.2196 20 1 13.6703 -1.3047 0.7692 21 1 13.2233 -0.9373 -1.5858 22 1 12.1973 0.4945 0.0810 23 6 9.3326 -3.6451 2.1113 24 6 9.6064 -3.0665 3.3365 25 6 9.8807 -3.8641 4.4317 26 6 9.8912 -5.2400 4.2993 27 6 9.6230 -5.8185 3.0728 28 6 9.3435 -5.0210 1.9788 29 6 5.9673 0.7811 -0.4075 30 6 4.7522 1.6265 -0.0033 31 1 -0.3633 0.0006 -1.0277 32 1 -0.3633 -0.8901 0.5134 33 1 -0.3633 0.8897 0.5142 34 1 5.0037 -1.7946 -1.0012 35 1 4.7219 -2.2320 0.7036 36 1 7.7473 -1.0718 -0.6179 37 1 11.8837 -3.3246 -1.4746 38 1 9.6018 -1.9914 3.4391 39 1 10.0906 -3.4122 5.3899 40 1 10.1093 -5.8631 5.1541 41 1 9.6316 -6.8935 2.9692 42 1 9.1336 -5.4729 1.0206 43 1 6.8810 1.3464 -0.2240 44 1 5.9004 0.5295 -1.4658 45 1 4.9063 2.0407 0.9930 46 1 4.6125 2.4350 -0.7208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435021651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:01 Heat of formation + Delta-G solvation = 62.968482 kcal Electronic energy + Delta-G solvation = -29130.327337 eV Core-core repulsion = 25213.864173 eV Total energy + Delta-G solvation = -3916.463164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.35582 -39.52933 -38.16029 -36.85078 -33.79542 -33.49207 -33.27120 -31.32430 -31.07071 -30.01381 -29.39477 -28.07662 -26.90863 -24.39943 -23.95171 -22.58151 -21.67687 -21.03159 -20.56615 -19.81268 -19.24140 -16.96622 -16.85043 -16.35893 -16.19337 -15.92539 -15.44049 -15.12832 -14.63866 -14.31916 -14.23443 -14.19467 -13.95985 -13.60713 -13.44692 -13.10163 -12.92840 -12.70348 -12.61766 -12.49895 -12.33996 -12.02328 -11.84660 -11.71648 -11.62209 -11.20368 -11.14796 -11.10974 -11.10128 -10.48725 -10.35805 -10.09925 -10.03873 -9.69565 -9.54932 -9.30041 -8.93785 -8.79280 -8.68724 -8.02399 -7.70765 -6.38326 -4.44276 1.60169 2.20329 2.29920 2.33069 2.82780 3.13486 3.21543 3.21740 3.46679 3.66232 3.82017 4.18649 4.29549 4.45719 4.64075 4.72678 4.76847 4.90363 5.00147 5.08714 5.15482 5.38290 5.40664 5.48268 5.50918 5.63042 5.65971 5.71567 5.74937 5.80739 5.82559 5.88210 6.11144 6.20201 6.33434 6.41549 6.43791 6.50707 6.72056 6.77561 6.88510 6.92227 7.08862 7.29819 7.36036 7.52300 7.65577 7.85709 7.96362 8.11170 8.12944 8.59633 9.00726 9.22098 10.70178 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.003185 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.869517 B = 8787.958254 C =10342.323583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.210 3.790 3 N -0.542 5.542 4 C 0.276 3.724 5 N -0.366 5.366 6 N -0.315 5.315 7 C 0.115 3.885 8 C 0.136 3.864 9 H 0.097 0.903 10 N -0.720 5.720 11 C 0.530 3.470 12 O -0.561 6.561 13 C 0.051 3.949 14 H 0.094 0.906 15 C -0.518 4.518 16 H 0.063 0.937 17 C 0.076 3.924 18 N -0.878 5.878 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.271 1.271 23 C -0.014 4.014 24 C -0.085 4.085 25 C -0.134 4.134 26 C -0.147 4.147 27 C -0.132 4.132 28 C -0.120 4.120 29 C -0.136 4.136 30 C -0.036 4.036 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.412 0.588 37 H 0.268 0.732 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.102 0.898 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.122 5.491 -0.634 11.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.072 4.072 3 N -0.271 5.271 4 C -0.001 4.001 5 N -0.156 5.156 6 N -0.144 5.144 7 C -0.009 4.009 8 C 0.028 3.972 9 H 0.115 0.885 10 N -0.374 5.374 11 C 0.320 3.680 12 O -0.439 6.439 13 C 0.030 3.970 14 H 0.112 0.888 15 C -0.555 4.555 16 H 0.082 0.918 17 C -0.129 4.129 18 N -0.513 5.513 19 Si 0.725 3.275 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.016 4.016 24 C -0.103 4.103 25 C -0.152 4.152 26 C -0.166 4.166 27 C -0.150 4.150 28 C -0.138 4.138 29 C -0.175 4.175 30 C -0.076 4.076 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.248 0.752 37 H 0.078 0.922 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.119 0.881 44 H 0.098 0.902 45 H 0.121 0.879 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.764 4.756 -0.046 11.768 hybrid contribution 1.464 0.412 -0.476 1.593 sum -9.300 5.168 -0.522 10.653 Atomic orbital electron populations 1.20037 0.84052 1.03836 1.03464 1.24387 0.98179 0.85649 0.98994 1.70145 0.99847 1.30886 1.26204 1.24306 0.95008 0.84124 0.96631 1.50142 1.05665 1.05857 1.53967 1.77938 0.86748 1.22653 1.27075 1.22474 0.78954 0.95281 1.04159 1.20972 0.83946 0.90657 1.01583 0.88523 1.45889 1.21388 1.46789 1.23293 1.21834 0.86941 0.77511 0.81686 1.90612 1.60907 1.64729 1.27618 1.18131 0.89243 0.94865 0.94789 0.88828 1.20662 1.05741 1.02419 1.26692 0.91845 1.24956 0.98295 0.95411 0.94240 1.69869 1.32223 1.25579 1.23667 0.86493 0.82532 0.80982 0.77515 1.20308 1.21028 1.19571 1.20041 0.93763 0.93010 0.94741 1.20826 0.97854 0.99313 0.92301 1.20969 1.02186 0.93859 0.98221 1.20820 1.03839 0.94855 0.97042 1.20916 1.01919 0.98704 0.93434 1.21006 1.01193 0.93670 0.97936 1.22056 0.99048 0.95644 1.00740 1.20340 0.86515 0.95778 1.04967 0.90092 0.90165 0.89730 0.89136 0.88049 0.75186 0.92199 0.87068 0.87536 0.87651 0.87493 0.86956 0.88148 0.90247 0.87944 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.52 10.51 36.00 0.38 -0.14 16 2 C 0.21 3.00 8.15 -156.43 -1.27 1.73 16 3 N -0.54 -8.00 11.18 -8.03 -0.09 -8.09 16 4 C 0.28 3.76 7.72 -155.78 -1.20 2.55 16 5 N -0.37 -5.45 4.04 -58.29 -0.24 -5.69 16 6 N -0.31 -5.06 12.74 32.50 0.41 -4.64 16 7 C 0.11 1.61 6.87 -4.00 -0.03 1.58 16 8 C 0.14 1.81 2.47 -67.69 -0.17 1.64 16 9 H 0.10 1.46 7.55 -51.93 -0.39 1.07 16 10 N -0.72 -11.26 4.98 -53.57 -0.27 -11.53 16 11 C 0.53 10.56 7.01 -10.98 -0.08 10.48 16 12 O -0.56 -12.48 15.08 5.56 0.08 -12.40 16 13 C 0.05 1.12 2.44 -94.07 -0.23 0.89 16 14 H 0.09 2.19 7.00 -51.93 -0.36 1.83 16 15 C -0.52 -12.00 7.46 -34.44 -0.26 -12.25 16 16 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 17 C 0.08 1.82 5.45 -17.82 -0.10 1.72 16 18 N -0.88 -21.92 12.78 55.43 0.71 -21.21 16 19 Si 0.90 18.95 29.54 -169.99 -5.02 13.93 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 C -0.01 -0.32 4.30 -104.62 -0.45 -0.77 16 24 C -0.08 -1.82 8.31 -39.58 -0.33 -2.15 16 25 C -0.13 -2.56 10.05 -39.58 -0.40 -2.96 16 26 C -0.15 -2.66 10.05 -39.58 -0.40 -3.06 16 27 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16 28 C -0.12 -2.52 9.67 -39.58 -0.38 -2.90 16 29 C -0.14 -1.33 5.43 -26.42 -0.14 -1.48 16 30 C -0.04 -0.34 6.33 -27.54 -0.17 -0.52 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.17 8.14 -51.92 -0.42 0.74 16 35 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 36 H 0.41 6.04 8.49 -40.82 -0.35 5.70 16 37 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 38 H 0.11 2.40 7.89 -52.49 -0.41 1.99 16 39 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 40 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.11 2.26 7.96 -52.49 -0.42 1.85 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 45 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 386.39 15.07 5.82 5.82 Total: -1.00 -30.29 386.39 -10.76 -41.05 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.55 Total: 11.26 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -5.63 Total: -8.51 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.53 Total: -51.15 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.29 -10.76 -41.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435021651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.017 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds