Wall clock time and date at job start Sat Apr 11 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33478 * 125.49889 * 2 1 4 4 C 1.30322 * 109.72520 * 180.02562 * 3 2 1 5 5 N 1.34679 * 108.05064 * 359.95960 * 4 3 2 6 6 N 1.30976 * 125.49881 * 180.02562 * 2 1 3 7 7 C 1.46294 * 125.05067 * 180.02562 * 5 4 3 8 8 C 1.53303 * 108.78131 * 16.99404 * 7 5 4 9 9 H 1.08996 * 109.45746 * 69.89675 * 8 7 5 10 10 N 1.46496 * 109.47144 * 189.88899 * 8 7 5 11 11 C 1.34777 * 119.99830 * 275.02718 * 10 8 7 12 12 O 1.21276 * 119.99946 * 359.97438 * 11 10 8 13 13 C 1.50700 * 120.00036 * 179.97438 * 11 10 8 14 14 H 1.08999 * 109.47152 * 299.99856 * 13 11 10 15 15 C 1.50704 * 109.46789 * 59.99881 * 13 11 10 16 16 H 1.07999 * 119.99920 * 33.92815 * 15 13 11 17 17 C 1.37881 * 119.99755 * 213.92412 * 15 13 11 18 18 N 1.31516 * 119.99907 * 6.39082 * 17 15 13 19 19 Si 1.86795 * 120.00004 * 186.39079 * 17 15 13 20 20 H 1.48504 * 109.47268 * 89.99952 * 19 17 15 21 21 H 1.48503 * 109.47284 * 210.00359 * 19 17 15 22 22 H 1.48503 * 109.46982 * 330.00292 * 19 17 15 23 23 C 1.50697 * 109.46981 * 179.97438 * 13 11 10 24 24 C 1.38238 * 120.00282 * 293.84598 * 23 13 11 25 25 C 1.38230 * 120.00198 * 179.76793 * 24 23 13 26 26 C 1.38238 * 119.99630 * 0.48678 * 25 24 23 27 27 C 1.38234 * 120.00483 * 359.78868 * 26 25 24 28 28 C 1.38236 * 119.99612 * 114.12509 * 23 13 11 29 29 C 1.53169 * 109.49126 * 309.89687 * 8 7 5 30 30 C 1.50932 * 127.90167 * 179.87786 * 4 3 2 31 31 H 1.08999 * 109.47106 * 89.96790 * 1 2 3 32 32 H 1.08992 * 109.47062 * 209.97607 * 1 2 3 33 33 H 1.08998 * 109.47233 * 329.97350 * 1 2 3 34 34 H 1.09009 * 109.58270 * 257.20726 * 7 5 4 35 35 H 1.08994 * 109.58730 * 136.78736 * 7 5 4 36 36 H 0.96994 * 120.00161 * 95.02468 * 10 8 7 37 37 H 0.96995 * 119.99872 * 179.97438 * 18 17 15 38 38 H 1.08001 * 119.99727 * 0.02562 * 24 23 13 39 39 H 1.07998 * 120.00589 * 180.25315 * 25 24 23 40 40 H 1.08006 * 119.99778 * 179.76686 * 26 25 24 41 41 H 1.07996 * 120.00604 * 179.97438 * 27 26 25 42 42 H 1.08000 * 120.00107 * 359.97438 * 28 23 13 43 43 H 1.08996 * 109.50325 * 189.10172 * 29 8 7 44 44 H 1.08990 * 109.50890 * 309.23638 * 29 8 7 45 45 H 1.08996 * 109.71746 * 76.38251 * 30 4 3 46 46 H 1.09002 * 109.71436 * 315.73500 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5362 0.7324 -0.0005 5 7 3.5897 -0.6133 0.0000 6 7 2.2675 -1.0663 -0.0005 7 6 4.8198 -1.4052 0.0002 8 6 5.9862 -0.5052 0.4239 9 1 5.8875 -0.2563 1.4805 10 7 7.2516 -1.2099 0.2043 11 6 7.7269 -2.0503 1.1447 12 8 7.1073 -2.2226 2.1729 13 6 9.0283 -2.7757 0.9186 14 1 8.9477 -3.3971 0.0267 15 6 10.1371 -1.7721 0.7331 16 1 10.1136 -0.8358 1.2709 17 6 11.1817 -2.0492 -0.1232 18 7 11.1491 -3.1299 -0.8720 19 14 12.6431 -0.8898 -0.2196 20 1 13.6703 -1.3047 0.7692 21 1 13.2233 -0.9373 -1.5858 22 1 12.1973 0.4945 0.0810 23 6 9.3326 -3.6451 2.1113 24 6 9.6064 -3.0665 3.3365 25 6 9.8807 -3.8641 4.4317 26 6 9.8912 -5.2400 4.2993 27 6 9.6230 -5.8185 3.0728 28 6 9.3435 -5.0210 1.9788 29 6 5.9673 0.7811 -0.4075 30 6 4.7522 1.6265 -0.0033 31 1 -0.3633 0.0006 -1.0277 32 1 -0.3633 -0.8901 0.5134 33 1 -0.3633 0.8897 0.5142 34 1 5.0037 -1.7946 -1.0012 35 1 4.7219 -2.2320 0.7036 36 1 7.7473 -1.0718 -0.6179 37 1 11.8837 -3.3246 -1.4746 38 1 9.6018 -1.9914 3.4391 39 1 10.0906 -3.4122 5.3899 40 1 10.1093 -5.8631 5.1541 41 1 9.6316 -6.8935 2.9692 42 1 9.1336 -5.4729 1.0206 43 1 6.8810 1.3464 -0.2240 44 1 5.9004 0.5295 -1.4658 45 1 4.9063 2.0407 0.9930 46 1 4.6125 2.4350 -0.7208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435021651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:00 Heat of formation + Delta-G solvation = 46.413248 kcal Electronic energy + Delta-G solvation = -29131.045225 eV Core-core repulsion = 25213.864173 eV Total energy + Delta-G solvation = -3917.181053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.42569 -41.03901 -39.59553 -38.11472 -35.53072 -34.77538 -34.28502 -32.91804 -32.19261 -31.55316 -30.46894 -29.39239 -28.24340 -25.86271 -25.20751 -23.73778 -23.22299 -22.42527 -21.69213 -21.11727 -20.51286 -18.65874 -18.06872 -17.73346 -17.58182 -17.32752 -16.72783 -16.31897 -16.13571 -15.77996 -15.56286 -15.32358 -15.18252 -14.95080 -14.69327 -14.31070 -14.10251 -14.00123 -13.94988 -13.62302 -13.45464 -13.33657 -13.28922 -12.90965 -12.86786 -12.76939 -12.74856 -12.19870 -12.16796 -12.08329 -11.95363 -11.67052 -11.26895 -11.15318 -10.80054 -10.71037 -10.48669 -10.37196 -10.11865 -9.57888 -9.28672 -8.20708 -6.30817 0.53208 0.73377 0.77531 1.12757 1.44789 1.49099 1.55977 1.77896 1.87879 2.37611 2.44534 2.90409 3.08726 3.21093 3.26227 3.47349 3.68958 3.77510 3.90709 4.13856 4.20403 4.26222 4.28370 4.34077 4.38978 4.43814 4.51673 4.66673 4.71473 4.74424 4.86076 4.86651 4.92736 4.94373 4.95286 5.05128 5.12314 5.27620 5.34985 5.42747 5.45016 5.51068 5.66541 5.76367 5.77172 5.81183 5.94405 6.21478 6.38653 6.66765 6.78018 7.03288 7.36098 7.47166 8.87540 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.003185 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.869517 B = 8787.958254 C =10342.323583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.205 3.795 3 N -0.560 5.560 4 C 0.275 3.725 5 N -0.379 5.379 6 N -0.356 5.356 7 C 0.122 3.878 8 C 0.141 3.859 9 H 0.079 0.921 10 N -0.705 5.705 11 C 0.532 3.468 12 O -0.588 6.588 13 C 0.052 3.948 14 H 0.072 0.928 15 C -0.514 4.514 16 H 0.059 0.941 17 C 0.038 3.962 18 N -0.906 5.906 19 Si 0.951 3.049 20 H -0.288 1.288 21 H -0.282 1.282 22 H -0.260 1.260 23 C -0.042 4.042 24 C -0.109 4.109 25 C -0.136 4.136 26 C -0.144 4.144 27 C -0.131 4.131 28 C -0.145 4.145 29 C -0.125 4.125 30 C -0.031 4.031 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.418 0.582 37 H 0.267 0.733 38 H 0.100 0.900 39 H 0.135 0.865 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.108 0.892 43 H 0.118 0.882 44 H 0.093 0.907 45 H 0.116 0.884 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.048 6.710 -0.268 12.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.076 4.076 3 N -0.289 5.289 4 C -0.001 4.001 5 N -0.170 5.170 6 N -0.185 5.185 7 C -0.001 4.001 8 C 0.034 3.966 9 H 0.097 0.903 10 N -0.357 5.357 11 C 0.321 3.679 12 O -0.468 6.468 13 C 0.031 3.969 14 H 0.090 0.910 15 C -0.552 4.552 16 H 0.077 0.923 17 C -0.164 4.164 18 N -0.543 5.543 19 Si 0.777 3.223 20 H -0.214 1.214 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.043 4.043 24 C -0.127 4.127 25 C -0.154 4.154 26 C -0.162 4.162 27 C -0.149 4.149 28 C -0.163 4.163 29 C -0.164 4.164 30 C -0.071 4.071 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.256 0.744 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.153 0.847 40 H 0.163 0.837 41 H 0.156 0.844 42 H 0.126 0.874 43 H 0.136 0.864 44 H 0.111 0.889 45 H 0.134 0.866 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.707 6.004 0.295 12.279 hybrid contribution 1.367 -0.008 -0.530 1.466 sum -9.340 5.996 -0.235 11.102 Atomic orbital electron populations 1.20239 0.81189 1.04920 1.04897 1.25260 0.99925 0.85135 0.97327 1.70210 1.00370 1.31125 1.27218 1.25132 0.96009 0.84014 0.94956 1.50149 1.05414 1.06468 1.54920 1.77890 0.87468 1.24114 1.29021 1.22307 0.79319 0.94700 1.03821 1.21040 0.82214 0.91887 1.01427 0.90326 1.45696 1.22038 1.45573 1.22422 1.21478 0.86419 0.77985 0.81996 1.90588 1.61493 1.65848 1.28904 1.18021 0.90114 0.94652 0.94125 0.91018 1.20745 1.06092 1.02298 1.26035 0.92321 1.25543 1.00190 0.96555 0.94147 1.69970 1.32788 1.27025 1.24491 0.85658 0.79636 0.79945 0.77075 1.21402 1.20773 1.18390 1.20184 0.95065 0.93793 0.95222 1.20885 0.99572 0.99167 0.93126 1.21345 1.00964 0.94507 0.98595 1.21278 1.02129 0.94833 0.97968 1.21308 1.00441 1.00195 0.92961 1.21171 1.02543 0.93697 0.98883 1.22037 1.00059 0.93600 1.00656 1.20568 0.84341 0.95521 1.06621 0.88360 0.89355 0.88315 0.88255 0.90865 0.74417 0.92379 0.88216 0.84686 0.83714 0.84415 0.87436 0.86390 0.88878 0.86628 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.95 10.51 71.23 0.75 -0.20 16 2 C 0.21 5.76 8.15 138.48 1.13 6.89 16 3 N -0.56 -15.92 11.18 -179.31 -2.01 -17.92 16 4 C 0.27 7.19 7.72 138.37 1.07 8.25 16 5 N -0.38 -11.34 4.04 -338.35 -1.37 -12.71 16 6 N -0.36 -11.55 12.74 -51.08 -0.65 -12.20 16 7 C 0.12 3.51 6.87 86.52 0.59 4.11 16 8 C 0.14 3.73 2.47 45.15 0.11 3.84 16 9 H 0.08 2.41 7.55 -2.39 -0.02 2.39 16 10 N -0.71 -22.33 4.98 -441.80 -2.20 -24.53 16 11 C 0.53 21.94 7.01 87.66 0.61 22.56 16 12 O -0.59 -27.21 15.08 -3.02 -0.05 -27.26 16 13 C 0.05 2.38 2.44 -13.03 -0.03 2.35 16 14 H 0.07 3.54 7.00 -2.39 -0.02 3.52 16 15 C -0.51 -24.25 7.46 25.60 0.19 -24.06 16 16 H 0.06 2.77 7.82 -2.91 -0.02 2.75 16 17 C 0.04 1.82 5.45 84.66 0.46 2.28 16 18 N -0.91 -46.11 12.78 21.45 0.27 -45.84 16 19 Si 0.95 38.76 29.54 68.60 2.03 40.79 16 20 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 C -0.04 -1.91 4.30 -19.87 -0.09 -2.00 16 24 C -0.11 -4.77 8.31 22.27 0.19 -4.58 16 25 C -0.14 -5.02 10.05 22.27 0.22 -4.79 16 26 C -0.14 -4.86 10.05 22.27 0.22 -4.63 16 27 C -0.13 -4.74 10.05 22.27 0.22 -4.51 16 28 C -0.14 -6.20 9.67 22.27 0.22 -5.98 16 29 C -0.13 -2.18 5.43 30.80 0.17 -2.01 16 30 C -0.03 -0.51 6.33 30.07 0.19 -0.32 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 35 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.42 12.23 8.49 -92.71 -0.79 11.45 16 37 H 0.27 13.07 8.31 -92.71 -0.77 12.30 16 38 H 0.10 4.44 7.89 -2.91 -0.02 4.42 16 39 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 40 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 41 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 42 H 0.11 4.54 7.96 -2.91 -0.02 4.52 16 43 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.09 1.42 8.12 -2.39 -0.02 1.40 16 45 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -67.58 386.39 2.48 -65.11 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: 0.21 Total: 37.38 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 6.23 Total: -2.82 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -5.95 Total: -113.20 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.05 Total: -27.26 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -67.58 2.48 -65.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435021651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.521 kcal (2) G-P(sol) polarization free energy of solvation -67.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds