Wall clock time and date at job start Sat Apr 11 2020 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30833 * 125.89636 * 2 1 4 4 N 1.40086 * 108.20679 * 179.73727 * 3 2 1 5 5 C 1.46507 * 126.03979 * 180.02562 * 4 3 2 6 6 C 1.34951 * 107.92314 * 0.02562 * 4 3 2 7 7 C 1.35320 * 107.74536 * 359.97438 * 6 4 3 8 8 C 1.50703 * 126.03882 * 180.02562 * 7 6 4 9 9 N 1.46898 * 109.46811 * 263.52142 * 8 7 6 10 10 C 1.46896 * 111.00371 * 287.84404 * 9 8 7 11 11 C 1.46901 * 110.99814 * 163.88998 * 9 8 7 12 12 C 1.53001 * 109.47231 * 284.10221 * 11 9 8 13 13 H 1.08988 * 109.47298 * 63.63845 * 12 11 9 14 14 C 1.53004 * 109.47012 * 183.64080 * 12 11 9 15 15 N 1.46506 * 109.46786 * 303.63605 * 12 11 9 16 16 C 1.34772 * 119.99469 * 153.75596 * 15 12 11 17 17 O 1.21287 * 120.00667 * 359.97438 * 16 15 12 18 18 C 1.50707 * 119.99679 * 180.02562 * 16 15 12 19 19 S 1.81006 * 109.47006 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99893 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00153 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00021 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99954 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99876 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47390 * 89.99813 * 24 22 20 26 26 H 1.48503 * 109.46691 * 209.99628 * 24 22 20 27 27 H 1.48498 * 109.47072 * 329.99122 * 24 22 20 28 28 H 1.08994 * 109.47352 * 84.19442 * 1 2 3 29 29 H 1.09002 * 109.46825 * 204.19921 * 1 2 3 30 30 H 1.09004 * 109.46888 * 324.19414 * 1 2 3 31 31 H 1.08998 * 109.46308 * 89.98025 * 5 4 3 32 32 H 1.08997 * 109.46889 * 209.97614 * 5 4 3 33 33 H 1.09000 * 109.46588 * 329.97743 * 5 4 3 34 34 H 1.07998 * 126.13043 * 179.97438 * 6 4 3 35 35 H 1.08994 * 109.46781 * 23.51829 * 8 7 6 36 36 H 1.08996 * 109.46929 * 143.52151 * 8 7 6 37 37 H 1.09008 * 109.47098 * 68.88750 * 10 9 8 38 38 H 1.08996 * 109.47655 * 188.89033 * 10 9 8 39 39 H 1.08999 * 109.46893 * 308.89206 * 10 9 8 40 40 H 1.09004 * 109.46883 * 44.09831 * 11 9 8 41 41 H 1.09002 * 109.47158 * 164.09867 * 11 9 8 42 42 H 1.08998 * 109.47061 * 300.00013 * 14 12 11 43 43 H 1.09005 * 109.47377 * 59.99636 * 14 12 11 44 44 H 1.08999 * 109.47001 * 179.97438 * 14 12 11 45 45 H 0.97001 * 120.00073 * 333.75342 * 15 12 11 46 46 H 1.08993 * 109.46765 * 299.99376 * 18 16 15 47 47 H 1.08999 * 109.47048 * 60.00226 * 18 16 15 48 48 H 0.96996 * 119.99623 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6342 0.0061 5 6 4.7899 1.5009 0.0087 6 6 3.6143 -0.7153 0.0092 7 6 2.3271 -1.1330 0.0057 8 6 1.8599 -2.5658 0.0079 9 7 1.5645 -2.9865 -1.3681 10 6 0.3332 -2.3536 -1.8593 11 6 1.4787 -4.4498 -1.4643 12 6 2.8870 -5.0467 -1.4290 13 1 3.3508 -4.8268 -0.4676 14 6 2.8034 -6.5625 -1.6202 15 7 3.6920 -4.4625 -2.5047 16 6 5.0327 -4.3977 -2.3837 17 8 5.5728 -4.8225 -1.3843 18 6 5.8608 -3.7962 -3.4900 19 16 7.6112 -3.8531 -3.0326 20 6 8.3251 -3.1096 -4.4616 21 1 7.6924 -2.7827 -5.2735 22 6 9.7007 -2.9441 -4.5439 23 7 10.2341 -2.3891 -5.6117 24 14 10.7952 -3.5103 -3.1400 25 1 11.2011 -4.9207 -3.3664 26 1 12.0048 -2.6510 -3.0779 27 1 10.0500 -3.4090 -1.8595 28 1 -0.3634 0.1039 -1.0223 29 1 -0.3633 -0.9374 0.4213 30 1 -0.3633 0.8335 0.6013 31 1 5.0786 1.7184 1.0370 32 1 5.6114 0.9970 -0.5005 33 1 4.5584 2.4321 -0.5085 34 1 4.4891 -1.3485 0.0136 35 1 2.6417 -3.2021 0.4225 36 1 0.9596 -2.6534 0.6159 37 1 0.5021 -1.2849 -1.9924 38 1 0.0516 -2.7986 -2.8136 39 1 -0.4678 -2.5075 -1.1363 40 1 0.8994 -4.8357 -0.6253 41 1 0.9909 -4.7246 -2.3995 42 1 2.2044 -6.9971 -0.8200 43 1 2.3395 -6.7824 -2.5817 44 1 3.8068 -6.9876 -1.5955 45 1 3.2600 -4.1224 -3.3038 46 1 5.7063 -4.3625 -4.4084 47 1 5.5601 -2.7603 -3.6468 48 1 11.1955 -2.2738 -5.6693 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483312598.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:29 Heat of formation + Delta-G solvation = 43.289862 kcal Electronic energy + Delta-G solvation = -27853.120070 eV Core-core repulsion = 24071.247528 eV Total energy + Delta-G solvation = -3781.872542 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.34135 -39.47295 -37.77507 -35.04697 -33.78703 -32.42848 -31.53003 -31.05310 -29.67890 -28.56267 -27.56944 -26.86362 -25.59651 -24.75113 -22.77511 -21.28100 -20.67569 -20.15509 -19.43591 -17.83030 -16.84568 -16.39981 -16.32771 -15.71819 -15.52081 -14.98727 -14.92924 -14.79845 -14.68187 -14.18857 -13.91674 -13.61308 -13.58083 -13.27534 -13.11382 -12.79936 -12.78174 -12.74755 -12.50777 -12.40427 -12.28412 -12.08091 -12.01964 -11.90930 -11.72901 -11.36239 -11.25043 -11.00852 -10.85890 -10.55944 -10.45124 -9.84876 -9.37941 -9.24022 -8.99785 -8.77674 -8.58058 -8.46918 -8.30552 -6.89054 -6.27932 -3.98802 1.87331 2.47733 2.61668 2.83798 3.12480 3.32442 3.39316 3.49764 3.73265 3.90854 4.33485 4.38761 4.66360 4.73849 4.78702 4.90394 4.95381 5.05282 5.09250 5.10754 5.11262 5.16907 5.22746 5.26828 5.31604 5.37796 5.39707 5.41978 5.44261 5.50116 5.59222 5.60913 5.66413 5.81553 5.85284 5.94803 6.01485 6.08264 6.10305 6.16388 6.61195 6.73126 6.89723 6.92632 7.00310 7.69379 7.83746 7.95456 8.43543 8.66577 9.18461 10.81473 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010291 B = 0.003437 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.080972 B = 8144.682753 C =10059.610761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.077 3.923 3 N -0.303 5.303 4 N -0.374 5.374 5 C 0.101 3.899 6 C 0.083 3.917 7 C -0.231 4.231 8 C 0.136 3.864 9 N -0.532 5.532 10 C 0.023 3.977 11 C 0.045 3.955 12 C 0.150 3.850 13 H 0.086 0.914 14 C -0.164 4.164 15 N -0.713 5.713 16 C 0.533 3.467 17 O -0.529 6.529 18 C -0.122 4.122 19 S -0.143 6.143 20 C -0.520 4.520 21 H 0.087 0.913 22 C 0.095 3.905 23 N -0.882 5.882 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.236 1.236 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.174 0.826 35 H 0.079 0.921 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.025 0.975 40 H 0.048 0.952 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.400 0.600 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.463 0.778 11.028 25.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 N -0.126 5.126 4 N -0.155 5.155 5 C -0.041 4.041 6 C -0.064 4.064 7 C -0.243 4.243 8 C 0.008 3.992 9 N -0.256 5.256 10 C -0.125 4.125 11 C -0.084 4.084 12 C 0.044 3.956 13 H 0.104 0.896 14 C -0.223 4.223 15 N -0.366 5.366 16 C 0.319 3.681 17 O -0.404 6.404 18 C -0.273 4.273 19 S 0.083 5.917 20 C -0.668 4.668 21 H 0.105 0.895 22 C -0.113 4.113 23 N -0.518 5.518 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.160 1.160 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.192 0.808 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.234 0.766 46 H 0.112 0.888 47 H 0.113 0.887 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.835 1.673 12.301 24.252 hybrid contribution -0.609 -0.559 -0.803 1.152 sum -21.443 1.114 11.497 24.356 Atomic orbital electron populations 1.20284 0.87285 1.02792 1.02709 1.22123 0.96482 0.90509 0.99890 1.77247 0.86631 1.22821 1.25927 1.48344 1.05409 1.04904 1.56807 1.21911 0.83793 0.95064 1.03298 1.22439 0.99491 0.84696 0.99771 1.19628 0.91753 0.95285 1.17638 1.20288 0.99435 0.91364 0.88141 1.61925 1.35130 1.06187 1.22349 1.22604 0.89743 1.00946 0.99224 1.22489 0.96174 0.87909 1.01800 1.20845 0.90291 0.91944 0.92558 0.89649 1.22172 1.02927 0.95513 1.01644 1.45744 1.05975 1.63344 1.21489 1.20162 0.81999 0.78046 0.87874 1.90676 1.71496 1.47258 1.31013 1.23264 1.00156 1.03912 0.99962 1.84716 0.96582 1.81403 1.28987 1.22339 0.95557 1.45503 1.03363 0.89487 1.24715 0.97122 0.93660 0.95833 1.69945 1.12324 1.42019 1.27557 0.86737 0.81199 0.79586 0.84325 1.19236 1.20039 1.15951 0.90522 0.90851 0.91227 0.90851 0.88815 0.89389 0.80849 0.90272 0.94173 0.90814 0.91912 0.95654 0.93343 0.90331 0.92045 0.92512 0.91541 0.76627 0.88840 0.88705 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 8.59 36.01 0.31 -0.28 16 2 C 0.08 0.91 6.51 -82.41 -0.54 0.37 16 3 N -0.30 -4.18 12.58 33.67 0.42 -3.75 16 4 N -0.37 -4.78 4.01 -68.16 -0.27 -5.05 16 5 C 0.10 0.96 11.47 59.85 0.69 1.64 16 6 C 0.08 1.06 11.40 -17.22 -0.20 0.86 16 7 C -0.23 -2.73 5.28 -105.05 -0.55 -3.28 16 8 C 0.14 1.34 5.02 -4.98 -0.02 1.32 16 9 N -0.53 -4.94 4.39 -244.37 -1.07 -6.01 16 10 C 0.02 0.18 8.21 60.06 0.49 0.67 16 11 C 0.04 0.36 4.54 -3.82 -0.02 0.34 16 12 C 0.15 1.59 2.63 -67.92 -0.18 1.41 16 13 H 0.09 1.08 6.26 -51.94 -0.33 0.76 16 14 C -0.16 -1.61 9.50 37.16 0.35 -1.26 16 15 N -0.71 -9.01 4.82 -53.80 -0.26 -9.27 16 16 C 0.53 9.26 7.83 -10.98 -0.09 9.17 16 17 O -0.53 -10.98 15.50 5.55 0.09 -10.90 16 18 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 19 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 20 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 21 H 0.09 2.63 8.03 -52.49 -0.42 2.20 16 22 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 23 N -0.88 -26.60 13.97 55.49 0.78 -25.82 16 24 Si 0.86 21.66 27.74 -169.99 -4.72 16.95 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 28 H 0.08 0.56 6.90 -51.93 -0.36 0.20 16 29 H 0.07 0.49 6.58 -51.93 -0.34 0.15 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.17 2.13 8.06 -52.49 -0.42 1.70 16 35 H 0.08 0.84 6.59 -51.93 -0.34 0.50 16 36 H 0.04 0.35 7.14 -51.93 -0.37 -0.02 16 37 H 0.07 0.67 5.23 -51.92 -0.27 0.39 16 38 H 0.06 0.44 7.76 -51.93 -0.40 0.03 16 39 H 0.02 0.17 7.31 -51.93 -0.38 -0.21 16 40 H 0.05 0.34 8.00 -51.93 -0.42 -0.08 16 41 H 0.08 0.55 7.69 -51.93 -0.40 0.15 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.40 4.37 8.62 -40.82 -0.35 4.02 16 46 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 47 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 48 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 400.94 15.07 6.04 6.04 Total: -1.00 -35.33 400.94 -8.07 -43.40 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.76 Total: 3.13 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 0.68 Total: -3.13 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -0.41 Total: -49.90 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.72 Total: 16.95 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.33 -8.07 -43.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483312598.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.688 kcal (2) G-P(sol) polarization free energy of solvation -35.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds