Wall clock time and date at job start Sat Apr 11 2020 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30833 * 125.89636 * 2 1 4 4 N 1.40086 * 108.20679 * 179.73727 * 3 2 1 5 5 C 1.46507 * 126.03979 * 180.02562 * 4 3 2 6 6 C 1.34951 * 107.92314 * 0.02562 * 4 3 2 7 7 C 1.35320 * 107.74536 * 359.97438 * 6 4 3 8 8 C 1.50703 * 126.03882 * 180.02562 * 7 6 4 9 9 N 1.46898 * 109.46811 * 263.52142 * 8 7 6 10 10 C 1.46896 * 111.00371 * 287.84404 * 9 8 7 11 11 C 1.46901 * 110.99814 * 163.88998 * 9 8 7 12 12 C 1.53001 * 109.47231 * 284.10221 * 11 9 8 13 13 H 1.08988 * 109.47298 * 63.63845 * 12 11 9 14 14 C 1.53004 * 109.47012 * 183.64080 * 12 11 9 15 15 N 1.46506 * 109.46786 * 303.63605 * 12 11 9 16 16 C 1.34772 * 119.99469 * 153.75596 * 15 12 11 17 17 O 1.21287 * 120.00667 * 359.97438 * 16 15 12 18 18 C 1.50707 * 119.99679 * 180.02562 * 16 15 12 19 19 S 1.81006 * 109.47006 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99893 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00153 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00021 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99954 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99876 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47390 * 89.99813 * 24 22 20 26 26 H 1.48503 * 109.46691 * 209.99628 * 24 22 20 27 27 H 1.48498 * 109.47072 * 329.99122 * 24 22 20 28 28 H 1.08994 * 109.47352 * 84.19442 * 1 2 3 29 29 H 1.09002 * 109.46825 * 204.19921 * 1 2 3 30 30 H 1.09004 * 109.46888 * 324.19414 * 1 2 3 31 31 H 1.08998 * 109.46308 * 89.98025 * 5 4 3 32 32 H 1.08997 * 109.46889 * 209.97614 * 5 4 3 33 33 H 1.09000 * 109.46588 * 329.97743 * 5 4 3 34 34 H 1.07998 * 126.13043 * 179.97438 * 6 4 3 35 35 H 1.08994 * 109.46781 * 23.51829 * 8 7 6 36 36 H 1.08996 * 109.46929 * 143.52151 * 8 7 6 37 37 H 1.09008 * 109.47098 * 68.88750 * 10 9 8 38 38 H 1.08996 * 109.47655 * 188.89033 * 10 9 8 39 39 H 1.08999 * 109.46893 * 308.89206 * 10 9 8 40 40 H 1.09004 * 109.46883 * 44.09831 * 11 9 8 41 41 H 1.09002 * 109.47158 * 164.09867 * 11 9 8 42 42 H 1.08998 * 109.47061 * 300.00013 * 14 12 11 43 43 H 1.09005 * 109.47377 * 59.99636 * 14 12 11 44 44 H 1.08999 * 109.47001 * 179.97438 * 14 12 11 45 45 H 0.97001 * 120.00073 * 333.75342 * 15 12 11 46 46 H 1.08993 * 109.46765 * 299.99376 * 18 16 15 47 47 H 1.08999 * 109.47048 * 60.00226 * 18 16 15 48 48 H 0.96996 * 119.99623 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6342 0.0061 5 6 4.7899 1.5009 0.0087 6 6 3.6143 -0.7153 0.0092 7 6 2.3271 -1.1330 0.0057 8 6 1.8599 -2.5658 0.0079 9 7 1.5645 -2.9865 -1.3681 10 6 0.3332 -2.3536 -1.8593 11 6 1.4787 -4.4498 -1.4643 12 6 2.8870 -5.0467 -1.4290 13 1 3.3508 -4.8268 -0.4676 14 6 2.8034 -6.5625 -1.6202 15 7 3.6920 -4.4625 -2.5047 16 6 5.0327 -4.3977 -2.3837 17 8 5.5728 -4.8225 -1.3843 18 6 5.8608 -3.7962 -3.4900 19 16 7.6112 -3.8531 -3.0326 20 6 8.3251 -3.1096 -4.4616 21 1 7.6924 -2.7827 -5.2735 22 6 9.7007 -2.9441 -4.5439 23 7 10.2341 -2.3891 -5.6117 24 14 10.7952 -3.5103 -3.1400 25 1 11.2011 -4.9207 -3.3664 26 1 12.0048 -2.6510 -3.0779 27 1 10.0500 -3.4090 -1.8595 28 1 -0.3634 0.1039 -1.0223 29 1 -0.3633 -0.9374 0.4213 30 1 -0.3633 0.8335 0.6013 31 1 5.0786 1.7184 1.0370 32 1 5.6114 0.9970 -0.5005 33 1 4.5584 2.4321 -0.5085 34 1 4.4891 -1.3485 0.0136 35 1 2.6417 -3.2021 0.4225 36 1 0.9596 -2.6534 0.6159 37 1 0.5021 -1.2849 -1.9924 38 1 0.0516 -2.7986 -2.8136 39 1 -0.4678 -2.5075 -1.1363 40 1 0.8994 -4.8357 -0.6253 41 1 0.9909 -4.7246 -2.3995 42 1 2.2044 -6.9971 -0.8200 43 1 2.3395 -6.7824 -2.5817 44 1 3.8068 -6.9876 -1.5955 45 1 3.2600 -4.1224 -3.3038 46 1 5.7063 -4.3625 -4.4084 47 1 5.5601 -2.7603 -3.6468 48 1 11.1955 -2.2738 -5.6693 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483312598.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:29 Heat of formation + Delta-G solvation = 17.839113 kcal Electronic energy + Delta-G solvation = -27854.223697 eV Core-core repulsion = 24071.247528 eV Total energy + Delta-G solvation = -3782.976169 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.22836 -40.70269 -38.66826 -36.06756 -34.67559 -34.63771 -32.68193 -31.92134 -30.46007 -29.92595 -28.28729 -27.84056 -27.59040 -25.52101 -23.59666 -22.26109 -21.66462 -21.24495 -20.28705 -19.85659 -17.92306 -17.60008 -17.35029 -17.06913 -16.63615 -16.42992 -16.09547 -15.91681 -15.61310 -15.44716 -14.95819 -14.91848 -14.61177 -14.36721 -14.31366 -13.94699 -13.89026 -13.49778 -13.33802 -13.25664 -13.24187 -13.14377 -13.00572 -12.98480 -12.83478 -12.69359 -12.54467 -12.52299 -12.09207 -11.85800 -11.64119 -11.32586 -11.16707 -10.84418 -10.51411 -10.16535 -9.93386 -9.37931 -9.04621 -8.96848 -8.51033 -6.20957 0.94037 1.01878 1.31633 1.47325 1.58744 1.64645 1.72009 1.76254 2.24875 2.39645 2.75525 2.87257 3.18089 3.59000 3.89196 3.90731 4.02117 4.17517 4.21332 4.26752 4.30005 4.36997 4.38627 4.45509 4.47343 4.50737 4.59107 4.63757 4.71365 4.73868 4.81859 4.82669 4.85873 4.90723 4.99387 5.13136 5.14906 5.23981 5.26184 5.35673 5.67033 5.71182 5.80830 6.09855 6.11847 6.21451 6.27877 6.65959 6.78878 6.94190 7.37061 8.61697 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010291 B = 0.003437 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.080972 B = 8144.682753 C =10059.610761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.073 3.927 3 N -0.336 5.336 4 N -0.384 5.384 5 C 0.095 3.905 6 C 0.062 3.938 7 C -0.232 4.232 8 C 0.141 3.859 9 N -0.549 5.549 10 C 0.025 3.975 11 C 0.054 3.946 12 C 0.148 3.852 13 H 0.064 0.936 14 C -0.158 4.158 15 N -0.690 5.690 16 C 0.538 3.462 17 O -0.566 6.566 18 C -0.110 4.110 19 S -0.168 6.168 20 C -0.530 4.530 21 H 0.058 0.942 22 C 0.046 3.954 23 N -0.919 5.919 24 Si 0.915 3.085 25 H -0.263 1.263 26 H -0.259 1.259 27 H -0.235 1.235 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.170 0.830 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.034 0.966 45 H 0.412 0.588 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.938 -0.249 11.834 27.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.093 4.093 3 N -0.160 5.160 4 N -0.165 5.165 5 C -0.045 4.045 6 C -0.085 4.085 7 C -0.244 4.244 8 C 0.013 3.987 9 N -0.273 5.273 10 C -0.123 4.123 11 C -0.074 4.074 12 C 0.043 3.957 13 H 0.082 0.918 14 C -0.217 4.217 15 N -0.341 5.341 16 C 0.323 3.677 17 O -0.446 6.446 18 C -0.261 4.261 19 S 0.059 5.941 20 C -0.677 4.677 21 H 0.076 0.924 22 C -0.160 4.160 23 N -0.557 5.557 24 Si 0.737 3.263 25 H -0.188 1.188 26 H -0.184 1.184 27 H -0.159 1.159 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.187 0.813 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.053 0.947 45 H 0.248 0.752 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.360 0.654 13.083 26.782 hybrid contribution 0.003 -0.232 -1.106 1.130 sum -23.357 0.422 11.977 26.252 Atomic orbital electron populations 1.20404 0.84820 1.03935 1.03601 1.22693 0.98030 0.89929 0.98642 1.77192 0.87292 1.24156 1.27330 1.48596 1.05773 1.05183 1.56976 1.22078 0.83124 0.94934 1.04376 1.22586 1.00064 0.84998 1.00881 1.19924 0.91353 0.96406 1.16735 1.20241 0.99723 0.89840 0.88934 1.61833 1.36468 1.07052 1.21929 1.22591 0.89441 0.99990 1.00246 1.22436 0.94200 0.87022 1.03733 1.21044 0.91320 0.92787 0.90591 0.91757 1.22110 1.01622 0.94407 1.03512 1.45591 1.04344 1.61797 1.22399 1.19755 0.83347 0.77934 0.86622 1.90667 1.72486 1.49266 1.32150 1.23251 0.96416 1.05057 1.01381 1.84595 1.01157 1.80923 1.27472 1.22489 0.95783 1.45483 1.03966 0.92393 1.25574 0.98504 0.93714 0.98171 1.70026 1.13108 1.43187 1.29396 0.85860 0.79743 0.79468 0.81249 1.18755 1.18377 1.15856 0.89466 0.89012 0.90918 0.89414 0.88627 0.88933 0.81294 0.91420 0.92444 0.92273 0.90743 0.93884 0.91253 0.88316 0.89716 0.90916 0.94687 0.75234 0.87602 0.87885 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 8.59 71.24 0.61 -0.37 16 2 C 0.07 1.66 6.51 43.10 0.28 1.94 16 3 N -0.34 -9.21 12.58 -47.39 -0.60 -9.81 16 4 N -0.38 -9.95 4.01 -369.55 -1.48 -11.44 16 5 C 0.10 1.85 11.47 127.77 1.47 3.32 16 6 C 0.06 1.60 11.40 83.54 0.95 2.55 16 7 C -0.23 -5.29 5.28 -20.14 -0.11 -5.39 16 8 C 0.14 2.50 5.02 85.56 0.43 2.93 16 9 N -0.55 -8.60 4.39 -927.06 -4.07 -12.67 16 10 C 0.02 0.30 8.21 127.69 1.05 1.35 16 11 C 0.05 0.67 4.54 86.30 0.39 1.06 16 12 C 0.15 2.81 2.63 44.99 0.12 2.93 16 13 H 0.06 1.56 6.26 -2.39 -0.01 1.54 16 14 C -0.16 -2.70 9.50 71.98 0.68 -2.02 16 15 N -0.69 -16.19 4.82 -442.52 -2.13 -18.32 16 16 C 0.54 18.32 7.83 87.66 0.69 19.00 16 17 O -0.57 -23.56 15.50 -3.05 -0.05 -23.60 16 18 C -0.11 -4.22 6.16 71.24 0.44 -3.78 16 19 S -0.17 -8.46 18.55 -56.49 -1.05 -9.51 16 20 C -0.53 -31.02 10.04 67.95 0.68 -30.34 16 21 H 0.06 3.61 8.03 -2.91 -0.02 3.59 16 22 C 0.05 2.68 5.50 84.86 0.47 3.15 16 23 N -0.92 -56.24 13.97 21.65 0.30 -55.94 16 24 Si 0.91 44.91 27.74 68.60 1.90 46.81 16 25 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.23 -11.41 6.74 99.48 0.67 -10.74 16 28 H 0.09 1.07 6.90 -2.39 -0.02 1.05 16 29 H 0.09 0.94 6.58 -2.39 -0.02 0.92 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.17 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.07 1.36 6.59 -2.39 -0.02 1.35 16 36 H 0.06 0.81 7.14 -2.39 -0.02 0.80 16 37 H 0.06 0.92 5.23 -2.38 -0.01 0.90 16 38 H 0.07 0.74 7.76 -2.39 -0.02 0.72 16 39 H 0.04 0.38 7.31 -2.39 -0.02 0.36 16 40 H 0.07 0.64 8.00 -2.39 -0.02 0.63 16 41 H 0.10 0.89 7.69 -2.39 -0.02 0.87 16 42 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.41 7.92 8.62 -92.71 -0.80 7.12 16 46 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 47 H 0.10 3.79 8.14 -2.40 -0.02 3.77 16 48 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -77.94 400.94 1.11 -76.84 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.13 Total: 21.33 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 8.15 Total: -3.68 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -7.98 Total: -108.18 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.05 Total: -23.60 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.90 Total: 46.81 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.05 Total: -9.51 kcal Total: -77.94 1.11 -76.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483312598.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.675 kcal (2) G-P(sol) polarization free energy of solvation -77.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds