Wall clock time and date at job start Sat Apr 11 2020 06:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30839 * 125.89977 * 2 1 4 4 N 1.40078 * 108.20556 * 179.97438 * 3 2 1 5 5 C 1.46496 * 126.03659 * 180.02562 * 4 3 2 6 6 C 1.34948 * 107.92979 * 359.75726 * 4 3 2 7 7 C 1.35321 * 107.74235 * 0.38704 * 6 4 3 8 8 C 1.50704 * 126.04128 * 179.87121 * 7 6 4 9 9 N 1.46897 * 109.46757 * 105.24749 * 8 7 6 10 10 C 1.46898 * 111.00216 * 288.04223 * 9 8 7 11 11 C 1.46899 * 110.99787 * 164.09088 * 9 8 7 12 12 C 1.53003 * 109.47418 * 190.00394 * 11 9 8 13 13 H 1.09003 * 109.46517 * 294.99951 * 12 11 9 14 14 C 1.52997 * 109.47317 * 175.00175 * 12 11 9 15 15 N 1.46496 * 109.47110 * 54.99547 * 12 11 9 16 16 C 1.34777 * 119.99808 * 205.00777 * 15 12 11 17 17 O 1.21283 * 120.00156 * 359.97438 * 16 15 12 18 18 C 1.50702 * 119.99731 * 180.02562 * 16 15 12 19 19 S 1.81009 * 109.46963 * 179.97438 * 18 16 15 20 20 C 1.76194 * 99.99956 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00248 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99939 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00076 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99831 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47394 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47176 * 119.99713 * 24 22 20 27 27 H 1.48509 * 109.47056 * 239.99230 * 24 22 20 28 28 H 1.08994 * 109.47200 * 264.91243 * 1 2 3 29 29 H 1.09000 * 109.46907 * 24.91472 * 1 2 3 30 30 H 1.09000 * 109.47004 * 144.91321 * 1 2 3 31 31 H 1.08999 * 109.47335 * 89.97714 * 5 4 3 32 32 H 1.09007 * 109.47599 * 209.97563 * 5 4 3 33 33 H 1.09001 * 109.47180 * 329.97217 * 5 4 3 34 34 H 1.07994 * 126.13610 * 180.24280 * 6 4 3 35 35 H 1.09001 * 109.46491 * 345.24887 * 8 7 6 36 36 H 1.09002 * 109.47234 * 225.24940 * 8 7 6 37 37 H 1.09001 * 109.46846 * 64.19194 * 10 9 8 38 38 H 1.09001 * 109.47283 * 184.19615 * 10 9 8 39 39 H 1.08999 * 109.47384 * 304.19464 * 10 9 8 40 40 H 1.09004 * 109.46949 * 309.99732 * 11 9 8 41 41 H 1.08998 * 109.47561 * 69.99868 * 11 9 8 42 42 H 1.08997 * 109.46748 * 299.99288 * 14 12 11 43 43 H 1.08996 * 109.47103 * 59.99353 * 14 12 11 44 44 H 1.09004 * 109.46978 * 179.97438 * 14 12 11 45 45 H 0.96993 * 120.00080 * 25.00380 * 15 12 11 46 46 H 1.08998 * 109.46781 * 299.99054 * 18 16 15 47 47 H 1.08997 * 109.47705 * 59.99704 * 18 16 15 48 48 H 0.97001 * 119.99943 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7898 1.5008 0.0013 6 6 3.6143 -0.7153 0.0064 7 6 2.3272 -1.1330 0.0007 8 6 1.8599 -2.5658 0.0013 9 7 1.3550 -2.9155 1.3357 10 6 2.4563 -3.0376 2.3001 11 6 0.5562 -4.1475 1.2901 12 6 -0.1542 -4.3448 2.6308 13 1 0.5864 -4.5100 3.4134 14 6 -1.0823 -5.5579 2.5426 15 7 -0.9407 -3.1500 2.9471 16 6 -1.2340 -2.8564 4.2294 17 8 -0.8473 -3.5815 5.1214 18 6 -2.0437 -1.6277 4.5547 19 16 -2.2680 -1.5101 6.3470 20 6 -3.2180 -0.0291 6.4399 21 1 -3.4807 0.5015 5.5367 22 6 -3.6287 0.4556 7.6739 23 7 -3.3090 -0.1913 8.7748 24 14 -4.6365 2.0254 7.7724 25 1 -4.8607 2.5564 6.4038 26 1 -5.9450 1.7344 8.4113 27 1 -3.9045 3.0337 8.5804 28 1 -0.3633 -0.0911 1.0236 29 1 -0.3633 0.9320 -0.4329 30 1 -0.3633 -0.8409 -0.5907 31 1 5.0821 1.7159 1.0291 32 1 5.6098 0.9981 -0.5118 33 1 4.5567 2.4331 -0.5129 34 1 4.4891 -1.3486 0.0120 35 1 2.6935 -3.2198 -0.2547 36 1 1.0631 -2.6885 -0.7323 37 1 2.9422 -2.0694 2.4212 38 1 2.0629 -3.3694 3.2609 39 1 3.1812 -3.7645 1.9337 40 1 -0.1847 -4.0709 0.4943 41 1 1.2104 -4.9977 1.0970 42 1 -1.8227 -5.3926 1.7600 43 1 -0.4970 -6.4468 2.3072 44 1 -1.5880 -5.6987 3.4979 45 1 -1.2503 -2.5703 2.2338 46 1 -1.5201 -0.7419 4.1949 47 1 -3.0179 -1.6957 4.0707 48 1 -3.5964 0.1473 9.6371 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483312602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:33 Heat of formation + Delta-G solvation = 43.220322 kcal Electronic energy + Delta-G solvation = -27463.086045 eV Core-core repulsion = 23681.210488 eV Total energy + Delta-G solvation = -3781.875557 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.42470 -39.38443 -37.68253 -34.93159 -33.93588 -32.35981 -31.55129 -30.74575 -29.67503 -28.40086 -27.47665 -26.97388 -25.41435 -25.01155 -22.70818 -20.99728 -20.89009 -20.01957 -19.53967 -17.75209 -16.84036 -16.41033 -16.09593 -15.93988 -15.43258 -15.20023 -14.74316 -14.64933 -14.57303 -14.16524 -13.98082 -13.61315 -13.55877 -13.13625 -13.04813 -12.89362 -12.67826 -12.63937 -12.46869 -12.25354 -12.20889 -12.09168 -11.93769 -11.79365 -11.70355 -11.33892 -11.01822 -10.94175 -10.75337 -10.68818 -10.58626 -9.72342 -9.32847 -9.21169 -9.00870 -8.66488 -8.60353 -8.37968 -8.13348 -6.40817 -6.15066 -3.84075 1.70764 2.33468 2.58003 3.16616 3.26126 3.29623 3.33783 3.40722 3.79961 3.96581 4.27601 4.28555 4.53518 4.66720 4.81452 4.86277 4.86802 5.02100 5.09287 5.10289 5.20157 5.23554 5.29176 5.30287 5.34078 5.41892 5.46035 5.50605 5.59475 5.66552 5.67927 5.80351 5.86042 5.89245 5.94777 5.96050 6.03825 6.13422 6.24156 6.28754 6.57731 6.80406 6.81828 6.93489 6.98601 7.62207 7.67045 7.97828 8.42690 8.83310 9.30647 10.92442 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009626 B = 0.002980 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.234003 B = 9394.727198 C =11425.264111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.100 3.900 3 N -0.301 5.301 4 N -0.380 5.380 5 C 0.104 3.896 6 C 0.057 3.943 7 C -0.226 4.226 8 C 0.136 3.864 9 N -0.530 5.530 10 C 0.027 3.973 11 C 0.047 3.953 12 C 0.148 3.852 13 H 0.085 0.915 14 C -0.163 4.163 15 N -0.716 5.716 16 C 0.534 3.466 17 O -0.526 6.526 18 C -0.151 4.151 19 S -0.063 6.063 20 C -0.532 4.532 21 H 0.073 0.927 22 C 0.072 3.928 23 N -0.869 5.869 24 Si 0.917 3.083 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.167 0.833 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.021 0.979 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.399 0.601 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.705 -5.100 -23.886 28.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.067 4.067 3 N -0.123 5.123 4 N -0.161 5.161 5 C -0.038 4.038 6 C -0.090 4.090 7 C -0.238 4.238 8 C 0.008 3.992 9 N -0.254 5.254 10 C -0.121 4.121 11 C -0.082 4.082 12 C 0.042 3.958 13 H 0.103 0.897 14 C -0.222 4.222 15 N -0.370 5.370 16 C 0.320 3.680 17 O -0.401 6.401 18 C -0.302 4.302 19 S 0.164 5.836 20 C -0.680 4.680 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.185 0.815 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.040 0.960 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.233 0.767 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.239 -4.563 -22.058 27.195 hybrid contribution -0.410 0.677 -1.468 1.668 sum 14.829 -3.886 -23.526 28.080 Atomic orbital electron populations 1.20149 0.86518 1.02521 1.03614 1.22209 0.96965 0.89857 0.97642 1.77375 0.86200 1.22831 1.25942 1.48316 1.05684 1.04601 1.57488 1.21814 0.83585 0.94984 1.03383 1.22267 0.99048 0.85072 1.02617 1.19754 0.91466 0.95898 1.16690 1.20250 0.98219 0.90481 0.90247 1.61882 1.23147 1.33103 1.07237 1.22383 0.92325 1.00910 0.96496 1.22467 0.96839 0.91067 0.97794 1.20843 0.93307 0.85443 0.96213 0.89704 1.22165 0.99908 0.97166 1.02965 1.45788 1.56190 1.27095 1.07894 1.20218 0.79500 0.86189 0.82066 1.90679 1.52478 1.50785 1.46188 1.23505 1.01554 0.97804 1.07307 1.85352 1.70265 1.33798 0.94222 1.22921 1.38778 1.10737 0.95581 0.90929 1.24983 0.96075 0.97843 0.94742 1.70033 1.43917 1.38631 0.97845 0.86139 0.79430 0.81779 0.78290 1.19586 1.20628 1.20638 0.89746 0.91484 0.90684 0.90792 0.89730 0.89387 0.81549 0.94502 0.90286 0.91585 0.90946 0.96027 0.90192 0.93671 0.92507 0.92175 0.91439 0.76677 0.89345 0.89495 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.22 36.01 0.37 -0.31 16 2 C 0.10 1.18 7.22 -82.40 -0.59 0.59 16 3 N -0.30 -3.97 12.58 33.67 0.42 -3.55 16 4 N -0.38 -3.90 4.01 -68.16 -0.27 -4.17 16 5 C 0.10 0.63 11.47 59.84 0.69 1.31 16 6 C 0.06 0.51 11.25 -17.22 -0.19 0.32 16 7 C -0.23 -2.26 4.86 -105.05 -0.51 -2.77 16 8 C 0.14 1.10 5.20 -4.98 -0.03 1.08 16 9 N -0.53 -4.97 4.43 -244.37 -1.08 -6.05 16 10 C 0.03 0.28 9.25 60.06 0.56 0.83 16 11 C 0.05 0.39 4.51 -3.82 -0.02 0.37 16 12 C 0.15 1.69 2.37 -67.93 -0.16 1.53 16 13 H 0.08 1.17 6.06 -51.93 -0.31 0.86 16 14 C -0.16 -1.73 9.48 37.16 0.35 -1.38 16 15 N -0.72 -9.67 4.80 -53.81 -0.26 -9.93 16 16 C 0.53 10.10 7.81 -10.98 -0.09 10.02 16 17 O -0.53 -12.00 15.53 5.55 0.09 -11.92 16 18 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 19 S -0.06 -1.75 20.57 -107.50 -2.21 -3.96 16 20 C -0.53 -15.47 9.50 30.94 0.29 -15.17 16 21 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.64 13.22 55.49 0.73 -25.90 16 24 Si 0.92 21.86 29.55 -169.99 -5.02 16.83 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.58 7.86 -51.93 -0.41 0.17 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.27 8.14 -51.92 -0.42 -0.15 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.04 0.26 7.96 -51.93 -0.41 -0.15 16 36 H 0.08 0.56 7.58 -51.93 -0.39 0.17 16 37 H 0.07 0.75 7.49 -51.93 -0.39 0.36 16 38 H 0.07 0.89 6.24 -51.93 -0.32 0.57 16 39 H 0.02 0.19 8.03 -51.93 -0.42 -0.23 16 40 H 0.08 0.56 7.86 -51.93 -0.41 0.15 16 41 H 0.05 0.33 8.12 -51.93 -0.42 -0.09 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.40 4.54 8.60 -40.82 -0.35 4.18 16 46 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 47 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 48 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 412.20 15.07 6.21 6.21 Total: -1.00 -37.24 412.20 -8.64 -45.88 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -8.04 Total: 1.04 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 0.79 Total: -4.50 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.46 Total: -49.60 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -37.24 -8.64 -45.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483312602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.101 kcal (2) G-P(sol) polarization free energy of solvation -37.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds