Wall clock time and date at job start Sat Apr 11 2020 06:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30839 * 125.89977 * 2 1 4 4 N 1.40078 * 108.20556 * 179.97438 * 3 2 1 5 5 C 1.46496 * 126.03659 * 180.02562 * 4 3 2 6 6 C 1.34948 * 107.92979 * 359.75726 * 4 3 2 7 7 C 1.35321 * 107.74235 * 0.38704 * 6 4 3 8 8 C 1.50704 * 126.04128 * 179.87121 * 7 6 4 9 9 N 1.46897 * 109.46757 * 105.24749 * 8 7 6 10 10 C 1.46898 * 111.00216 * 288.04223 * 9 8 7 11 11 C 1.46899 * 110.99787 * 164.09088 * 9 8 7 12 12 C 1.53003 * 109.47418 * 190.00394 * 11 9 8 13 13 H 1.09003 * 109.46517 * 294.99951 * 12 11 9 14 14 C 1.52997 * 109.47317 * 175.00175 * 12 11 9 15 15 N 1.46496 * 109.47110 * 54.99547 * 12 11 9 16 16 C 1.34777 * 119.99808 * 205.00777 * 15 12 11 17 17 O 1.21283 * 120.00156 * 359.97438 * 16 15 12 18 18 C 1.50702 * 119.99731 * 180.02562 * 16 15 12 19 19 S 1.81009 * 109.46963 * 179.97438 * 18 16 15 20 20 C 1.76194 * 99.99956 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00248 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99939 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00076 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99831 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47394 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47176 * 119.99713 * 24 22 20 27 27 H 1.48509 * 109.47056 * 239.99230 * 24 22 20 28 28 H 1.08994 * 109.47200 * 264.91243 * 1 2 3 29 29 H 1.09000 * 109.46907 * 24.91472 * 1 2 3 30 30 H 1.09000 * 109.47004 * 144.91321 * 1 2 3 31 31 H 1.08999 * 109.47335 * 89.97714 * 5 4 3 32 32 H 1.09007 * 109.47599 * 209.97563 * 5 4 3 33 33 H 1.09001 * 109.47180 * 329.97217 * 5 4 3 34 34 H 1.07994 * 126.13610 * 180.24280 * 6 4 3 35 35 H 1.09001 * 109.46491 * 345.24887 * 8 7 6 36 36 H 1.09002 * 109.47234 * 225.24940 * 8 7 6 37 37 H 1.09001 * 109.46846 * 64.19194 * 10 9 8 38 38 H 1.09001 * 109.47283 * 184.19615 * 10 9 8 39 39 H 1.08999 * 109.47384 * 304.19464 * 10 9 8 40 40 H 1.09004 * 109.46949 * 309.99732 * 11 9 8 41 41 H 1.08998 * 109.47561 * 69.99868 * 11 9 8 42 42 H 1.08997 * 109.46748 * 299.99288 * 14 12 11 43 43 H 1.08996 * 109.47103 * 59.99353 * 14 12 11 44 44 H 1.09004 * 109.46978 * 179.97438 * 14 12 11 45 45 H 0.96993 * 120.00080 * 25.00380 * 15 12 11 46 46 H 1.08998 * 109.46781 * 299.99054 * 18 16 15 47 47 H 1.08997 * 109.47705 * 59.99704 * 18 16 15 48 48 H 0.97001 * 119.99943 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7898 1.5008 0.0013 6 6 3.6143 -0.7153 0.0064 7 6 2.3272 -1.1330 0.0007 8 6 1.8599 -2.5658 0.0013 9 7 1.3550 -2.9155 1.3357 10 6 2.4563 -3.0376 2.3001 11 6 0.5562 -4.1475 1.2901 12 6 -0.1542 -4.3448 2.6308 13 1 0.5864 -4.5100 3.4134 14 6 -1.0823 -5.5579 2.5426 15 7 -0.9407 -3.1500 2.9471 16 6 -1.2340 -2.8564 4.2294 17 8 -0.8473 -3.5815 5.1214 18 6 -2.0437 -1.6277 4.5547 19 16 -2.2680 -1.5101 6.3470 20 6 -3.2180 -0.0291 6.4399 21 1 -3.4807 0.5015 5.5367 22 6 -3.6287 0.4556 7.6739 23 7 -3.3090 -0.1913 8.7748 24 14 -4.6365 2.0254 7.7724 25 1 -4.8607 2.5564 6.4038 26 1 -5.9450 1.7344 8.4113 27 1 -3.9045 3.0337 8.5804 28 1 -0.3633 -0.0911 1.0236 29 1 -0.3633 0.9320 -0.4329 30 1 -0.3633 -0.8409 -0.5907 31 1 5.0821 1.7159 1.0291 32 1 5.6098 0.9981 -0.5118 33 1 4.5567 2.4331 -0.5129 34 1 4.4891 -1.3486 0.0120 35 1 2.6935 -3.2198 -0.2547 36 1 1.0631 -2.6885 -0.7323 37 1 2.9422 -2.0694 2.4212 38 1 2.0629 -3.3694 3.2609 39 1 3.1812 -3.7645 1.9337 40 1 -0.1847 -4.0709 0.4943 41 1 1.2104 -4.9977 1.0970 42 1 -1.8227 -5.3926 1.7600 43 1 -0.4970 -6.4468 2.3072 44 1 -1.5880 -5.6987 3.4979 45 1 -1.2503 -2.5703 2.2338 46 1 -1.5201 -0.7419 4.1949 47 1 -3.0179 -1.6957 4.0707 48 1 -3.5964 0.1473 9.6371 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483312602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:32 Heat of formation + Delta-G solvation = 15.972763 kcal Electronic energy + Delta-G solvation = -27464.267588 eV Core-core repulsion = 23681.210488 eV Total energy + Delta-G solvation = -3783.057100 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.13619 -40.69286 -38.63562 -35.98093 -34.67944 -34.57026 -32.72176 -31.58998 -30.34877 -29.88309 -28.21986 -27.69704 -27.63731 -25.68732 -23.52397 -22.07901 -21.59574 -21.24416 -20.26938 -19.79650 -17.84356 -17.53392 -17.10636 -16.87077 -16.84940 -16.32367 -16.11112 -15.98928 -15.67160 -15.37716 -14.88457 -14.59712 -14.57304 -14.24979 -14.17155 -13.92067 -13.81524 -13.55438 -13.24999 -13.18097 -13.13635 -12.96009 -12.92110 -12.90347 -12.84963 -12.73856 -12.54898 -12.49020 -12.12195 -11.70142 -11.58816 -11.35287 -11.14632 -10.79637 -10.24104 -10.10497 -9.91331 -9.29368 -9.06738 -8.63467 -8.33501 -6.10423 1.00901 1.29753 1.41181 1.48874 1.60979 1.73950 1.77058 1.82860 2.28231 2.45295 3.00393 3.17130 3.37177 3.70509 3.86630 3.97245 4.10827 4.19729 4.26842 4.28765 4.35831 4.41339 4.46954 4.48917 4.54482 4.56114 4.58192 4.63938 4.66968 4.80982 4.83171 4.85994 4.89076 4.97901 5.09263 5.14975 5.15677 5.22382 5.26036 5.36143 5.43351 5.69894 5.84548 6.17650 6.21493 6.22297 6.29559 6.71600 6.87222 7.07949 7.43463 8.76026 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009626 B = 0.002980 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.234003 B = 9394.727198 C =11425.264111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.081 3.919 3 N -0.351 5.351 4 N -0.387 5.387 5 C 0.096 3.904 6 C 0.060 3.940 7 C -0.240 4.240 8 C 0.143 3.857 9 N -0.543 5.543 10 C 0.035 3.965 11 C 0.057 3.943 12 C 0.145 3.855 13 H 0.058 0.942 14 C -0.157 4.157 15 N -0.689 5.689 16 C 0.535 3.465 17 O -0.572 6.572 18 C -0.127 4.127 19 S -0.151 6.151 20 C -0.544 4.544 21 H 0.080 0.920 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.258 1.258 26 H -0.272 1.272 27 H -0.274 1.274 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.200 0.800 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.044 0.956 39 H 0.041 0.959 40 H 0.105 0.895 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.030 0.970 45 H 0.414 0.586 46 H 0.100 0.900 47 H 0.106 0.894 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.022 -5.302 -27.013 31.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.085 4.085 3 N -0.175 5.175 4 N -0.168 5.168 5 C -0.044 4.044 6 C -0.088 4.088 7 C -0.252 4.252 8 C 0.015 3.985 9 N -0.268 5.268 10 C -0.113 4.113 11 C -0.071 4.071 12 C 0.040 3.960 13 H 0.076 0.924 14 C -0.216 4.216 15 N -0.342 5.342 16 C 0.321 3.679 17 O -0.451 6.451 18 C -0.278 4.278 19 S 0.076 5.924 20 C -0.692 4.692 21 H 0.098 0.902 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.819 3.181 25 H -0.181 1.181 26 H -0.197 1.197 27 H -0.200 1.200 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.136 0.864 33 H 0.104 0.896 34 H 0.217 0.783 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.049 0.951 45 H 0.250 0.750 46 H 0.118 0.882 47 H 0.124 0.876 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.564 -4.764 -25.253 30.044 hybrid contribution -0.390 0.692 -0.595 0.993 sum 15.173 -4.073 -25.849 30.248 Atomic orbital electron populations 1.20168 0.85864 1.03295 1.03182 1.22593 0.97763 0.90442 0.97662 1.77280 0.87951 1.24409 1.27881 1.48655 1.05546 1.05643 1.57000 1.22100 0.83239 0.95093 1.04003 1.22852 1.00044 0.84916 1.00948 1.20043 0.91604 0.96466 1.17063 1.20267 0.99337 0.89461 0.89431 1.61814 1.23122 1.33841 1.07980 1.22217 0.92917 1.00421 0.95776 1.22415 0.97268 0.91457 0.95966 1.21048 0.92840 0.84634 0.97483 0.92392 1.22102 1.00208 0.97627 1.01649 1.45578 1.54792 1.27683 1.06137 1.19913 0.79324 0.85263 0.83421 1.90667 1.54477 1.52055 1.47938 1.23344 1.03256 0.99532 1.01674 1.85509 1.70794 1.34546 1.01551 1.23231 1.38895 1.10826 0.96255 0.90175 1.26115 0.97185 1.01731 0.94139 1.70192 1.45277 1.40734 0.98610 0.84925 0.77529 0.76681 0.78934 1.18122 1.19732 1.19985 0.90908 0.91993 0.88373 0.90612 0.86445 0.89578 0.78301 0.92768 0.88767 0.93127 0.93684 0.94013 0.87634 0.91596 0.90496 0.89756 0.95072 0.74970 0.88205 0.87559 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.22 71.24 0.73 -0.51 16 2 C 0.08 1.85 7.22 43.10 0.31 2.16 16 3 N -0.35 -9.24 12.58 -47.38 -0.60 -9.84 16 4 N -0.39 -7.52 4.01 -369.56 -1.48 -9.00 16 5 C 0.10 1.04 11.47 127.77 1.47 2.50 16 6 C 0.06 0.94 11.25 83.54 0.94 1.88 16 7 C -0.24 -4.29 4.86 -20.14 -0.10 -4.38 16 8 C 0.14 1.80 5.20 85.56 0.44 2.24 16 9 N -0.54 -8.72 4.43 -927.04 -4.11 -12.83 16 10 C 0.04 0.67 9.25 127.69 1.18 1.86 16 11 C 0.06 0.74 4.51 86.30 0.39 1.13 16 12 C 0.15 3.08 2.37 44.99 0.11 3.18 16 13 H 0.06 1.60 6.06 -2.39 -0.01 1.59 16 14 C -0.16 -3.02 9.48 71.98 0.68 -2.34 16 15 N -0.69 -17.78 4.80 -442.53 -2.12 -19.90 16 16 C 0.54 20.45 7.81 87.66 0.68 21.13 16 17 O -0.57 -27.16 15.53 -3.04 -0.05 -27.21 16 18 C -0.13 -5.30 6.16 71.24 0.44 -4.86 16 19 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 20 C -0.54 -32.08 9.50 67.95 0.65 -31.43 16 21 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 22 C 0.01 0.75 5.49 84.86 0.47 1.22 16 23 N -0.91 -57.23 13.22 21.65 0.29 -56.94 16 24 Si 1.00 44.89 29.55 68.60 2.03 46.91 16 25 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.10 1.28 7.86 -2.39 -0.02 1.26 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.12 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.20 1.60 8.06 -2.91 -0.02 1.58 16 35 H 0.05 0.52 7.96 -2.39 -0.02 0.50 16 36 H 0.09 0.92 7.58 -2.39 -0.02 0.90 16 37 H 0.05 1.11 7.49 -2.39 -0.02 1.10 16 38 H 0.04 1.11 6.24 -2.39 -0.01 1.10 16 39 H 0.04 0.62 8.03 -2.39 -0.02 0.60 16 40 H 0.11 0.92 7.86 -2.39 -0.02 0.90 16 41 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.41 8.41 8.60 -92.71 -0.80 7.62 16 46 H 0.10 3.93 8.14 -2.40 -0.02 3.91 16 47 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 48 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -85.82 412.20 1.33 -84.49 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.15 Total: 20.38 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 8.39 Total: -6.22 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -8.03 Total: -108.51 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.05 Total: -27.21 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -85.82 1.33 -84.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483312602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.461 kcal (2) G-P(sol) polarization free energy of solvation -85.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds