Wall clock time and date at job start Sat Apr 11 2020 06:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38541 * 120.01429 * 2 1 4 4 C 1.40072 * 117.81959 * 179.97438 * 3 2 1 5 5 C 1.48138 * 121.14882 * 179.97438 * 4 3 2 6 6 O 1.21514 * 120.00219 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00106 * 180.02562 * 5 4 3 8 8 C 1.46500 * 119.99975 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.47046 * 179.97438 * 8 7 5 10 10 C 1.38262 * 120.00057 * 256.44094 * 9 8 7 11 11 C 1.38202 * 119.99977 * 179.97438 * 10 9 8 12 12 C 1.38261 * 120.00367 * 359.79203 * 11 10 9 13 13 C 1.38214 * 119.99382 * 0.48251 * 12 11 10 14 14 C 1.38215 * 119.99810 * 76.46228 * 9 8 7 15 15 C 1.50695 * 120.00205 * 359.97438 * 14 9 8 16 16 N 1.46501 * 109.47309 * 173.93432 * 15 14 9 17 17 C 1.46497 * 119.99865 * 273.17094 * 16 15 14 18 18 C 1.36936 * 119.99385 * 93.16602 * 16 15 14 19 19 H 1.07999 * 120.00645 * 19.71230 * 18 16 15 20 20 C 1.38818 * 119.99370 * 199.70356 * 18 16 15 21 21 N 1.31614 * 120.00230 * 15.99693 * 20 18 16 22 22 Si 1.86804 * 119.99743 * 195.99213 * 20 18 16 23 23 H 1.48498 * 109.46982 * 94.98533 * 22 20 18 24 24 H 1.48498 * 109.47015 * 214.98926 * 22 20 18 25 25 H 1.48498 * 109.47157 * 334.99202 * 22 20 18 26 26 C 1.39769 * 117.70939 * 0.25485 * 4 3 2 27 27 N 1.31897 * 119.64957 * 359.48452 * 26 4 3 28 28 N 1.28283 * 122.32912 * 0.54002 * 27 26 4 29 29 H 1.09002 * 109.47544 * 89.99849 * 1 2 3 30 30 H 1.09001 * 109.46955 * 209.99178 * 1 2 3 31 31 H 1.08996 * 109.47339 * 329.99534 * 1 2 3 32 32 H 1.08003 * 121.09074 * 359.96457 * 3 2 1 33 33 H 0.97002 * 120.00041 * 359.97438 * 7 5 4 34 34 H 1.08996 * 109.47128 * 59.99768 * 8 7 5 35 35 H 1.08999 * 109.46917 * 299.99141 * 8 7 5 36 36 H 1.08005 * 119.99484 * 359.97438 * 10 9 8 37 37 H 1.08001 * 120.00394 * 180.02562 * 11 10 9 38 38 H 1.07992 * 120.00593 * 180.25861 * 12 11 10 39 39 H 1.08006 * 119.99866 * 179.77128 * 13 12 11 40 40 H 1.09001 * 109.47484 * 293.94170 * 15 14 9 41 41 H 1.09008 * 109.46964 * 53.93334 * 15 14 9 42 42 H 1.09000 * 109.47262 * 95.42041 * 17 16 15 43 43 H 1.09008 * 109.46807 * 215.41211 * 17 16 15 44 44 H 1.08999 * 109.47524 * 335.41234 * 17 16 15 45 45 H 0.97006 * 120.00167 * 179.97438 * 21 20 18 46 46 H 1.07992 * 120.17945 * 179.73250 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1996 0.0000 4 6 3.5997 1.1460 0.0006 5 6 4.4139 2.3835 0.0000 6 8 3.8688 3.4695 -0.0014 7 7 5.7594 2.3049 0.0001 8 6 6.5646 3.5288 -0.0010 9 6 8.0277 3.1675 -0.0001 10 6 8.7658 3.2756 1.1640 11 6 10.1073 2.9437 1.1649 12 6 10.7105 2.4996 0.0028 13 6 9.9740 2.3969 -1.1622 14 6 8.6318 2.7285 -1.1632 15 6 7.8274 2.6106 -2.4320 16 7 8.7172 2.2684 -3.5444 17 6 9.4013 3.3291 -4.2881 18 6 8.9094 0.9571 -3.8888 19 1 8.1957 0.2075 -3.5804 20 6 10.0217 0.5913 -4.6345 21 7 11.0407 1.4170 -4.7446 22 14 10.0722 -1.0729 -5.4814 23 1 9.6180 -0.9267 -6.8876 24 1 11.4618 -1.5962 -5.4619 25 1 9.1770 -2.0188 -4.7680 26 6 4.2017 -0.1154 -0.0044 27 7 3.4483 -1.1980 0.0009 28 7 2.1667 -1.1419 0.0004 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 1.6781 2.1452 -0.0006 33 1 6.1946 1.4380 0.0008 34 1 6.3351 4.1155 0.8884 35 1 6.3351 4.1139 -0.8916 36 1 8.2938 3.6194 2.0726 37 1 10.6838 3.0277 2.0743 38 1 11.7578 2.2363 0.0045 39 1 10.4460 2.0535 -2.0710 40 1 7.0757 1.8300 -2.3145 41 1 7.3349 3.5607 -2.6396 42 1 10.4024 3.4708 -3.8809 43 1 9.4730 3.0479 -5.3388 44 1 8.8376 4.2576 -4.1981 45 1 11.8181 1.1612 -5.2654 46 1 5.2780 -0.2032 -0.0086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484554774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:54 Heat of formation + Delta-G solvation = 74.540950 kcal Electronic energy + Delta-G solvation = -28907.366037 eV Core-core repulsion = 24991.404693 eV Total energy + Delta-G solvation = -3915.961344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.51515 -39.86669 -38.87827 -35.63661 -35.17589 -34.25270 -33.55971 -32.01808 -31.03544 -29.94538 -28.64197 -26.96682 -26.12563 -25.62794 -24.60836 -23.96344 -22.23215 -20.96490 -20.84633 -20.04724 -18.39872 -17.85387 -16.81390 -16.64768 -16.05831 -15.88452 -15.78804 -15.39117 -14.95165 -14.74539 -14.46450 -14.16690 -13.85734 -13.70877 -13.57995 -13.30413 -13.23032 -12.98412 -12.78985 -12.66843 -12.51885 -12.24846 -11.64384 -11.38948 -11.28022 -10.94828 -10.83021 -10.74633 -10.57010 -10.50880 -10.48033 -10.35843 -10.07573 -10.06982 -9.90927 -9.88022 -9.24466 -8.62839 -8.39874 -8.10685 -6.93948 -5.82807 -3.27019 0.04564 0.53818 1.60905 1.92432 2.51914 2.91866 3.33588 3.34041 3.42162 3.42356 3.63838 4.00821 4.12775 4.24746 4.37464 4.43603 4.48597 4.77714 4.84748 5.01864 5.15481 5.16096 5.25562 5.36345 5.38050 5.46830 5.48206 5.52310 5.61245 5.67845 5.75004 5.83092 5.94246 6.11969 6.21304 6.27117 6.36718 6.48374 6.66348 6.68102 6.83584 7.13392 7.20641 7.30320 7.34860 7.62573 7.64465 7.74367 7.86503 8.27593 8.36016 9.13314 9.75776 10.23554 11.21708 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009421 B = 0.003463 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.462566 B = 8084.622776 C = 9892.205200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.065 3.935 3 C -0.059 4.059 4 C -0.125 4.125 5 C 0.562 3.438 6 O -0.529 6.529 7 N -0.707 5.707 8 C 0.168 3.832 9 C -0.132 4.132 10 C -0.113 4.113 11 C -0.140 4.140 12 C -0.118 4.118 13 C -0.085 4.085 14 C -0.076 4.076 15 C 0.181 3.819 16 N -0.598 5.598 17 C 0.160 3.840 18 C -0.257 4.257 19 H 0.069 0.931 20 C 0.005 3.995 21 N -0.905 5.905 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.066 3.934 27 N -0.234 5.234 28 N -0.230 5.230 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.163 0.837 33 H 0.405 0.595 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.162 0.838 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.032 0.968 43 H 0.044 0.956 44 H -0.002 1.002 45 H 0.254 0.746 46 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.070 2.499 12.385 18.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.080 4.080 3 C -0.089 4.089 4 C -0.139 4.139 5 C 0.347 3.653 6 O -0.406 6.406 7 N -0.358 5.358 8 C 0.046 3.954 9 C -0.133 4.133 10 C -0.131 4.131 11 C -0.158 4.158 12 C -0.137 4.137 13 C -0.103 4.103 14 C -0.079 4.079 15 C 0.054 3.946 16 N -0.320 5.320 17 C 0.016 3.984 18 C -0.386 4.386 19 H 0.087 0.913 20 C -0.194 4.194 21 N -0.550 5.550 22 Si 0.731 3.269 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.204 1.204 26 C -0.099 4.099 27 N -0.074 5.074 28 N -0.074 5.074 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.180 0.820 33 H 0.241 0.759 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.179 0.821 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.017 0.983 45 H 0.064 0.936 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -13.334 1.620 12.254 18.182 hybrid contribution 0.815 0.273 -0.424 0.958 sum -12.519 1.893 11.830 17.328 Atomic orbital electron populations 1.20716 0.86850 1.04322 1.04020 1.22970 0.99454 0.89903 0.95672 1.22487 0.93114 1.00675 0.92631 1.21277 0.95313 0.95287 1.02070 1.17866 0.82324 0.87861 0.77287 1.90791 1.71856 1.28344 1.49581 1.46036 1.05194 1.11012 1.73603 1.20198 0.86535 0.85723 1.02922 1.19593 0.94204 1.05243 0.94269 1.20825 0.94388 1.01193 0.96743 1.20988 0.94900 1.01845 0.98054 1.21314 0.99820 0.99302 0.93217 1.21787 0.93703 0.95432 0.99361 1.21320 0.95780 0.95030 0.95782 1.19906 0.91986 0.98171 0.84564 1.43966 1.52498 1.03666 1.31879 1.20850 0.94610 0.86584 0.96382 1.19201 1.04336 0.84385 1.30668 0.91290 1.24901 0.95082 0.97777 1.01601 1.70058 1.05515 1.36260 1.43157 0.86285 0.76924 0.83738 0.79925 1.21555 1.21777 1.20416 1.24596 1.02731 0.88776 0.93822 1.73090 0.99079 1.26756 1.08509 1.72857 1.01990 1.24979 1.07564 0.89483 0.89652 0.89950 0.81968 0.75944 0.90742 0.90083 0.86978 0.87014 0.86775 0.82066 0.92328 0.93090 0.94961 0.93721 0.98340 0.93614 0.80644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 10.19 36.00 0.37 -0.24 16 2 C 0.06 0.64 6.86 -82.46 -0.57 0.07 16 3 C -0.06 -0.59 9.43 -38.78 -0.37 -0.96 16 4 C -0.13 -1.41 5.92 -104.57 -0.62 -2.03 16 5 C 0.56 7.07 7.80 -12.20 -0.10 6.97 16 6 O -0.53 -8.02 16.49 5.35 0.09 -7.93 16 7 N -0.71 -8.33 5.27 -62.34 -0.33 -8.66 16 8 C 0.17 2.13 5.16 -5.19 -0.03 2.11 16 9 C -0.13 -1.90 5.25 -104.62 -0.55 -2.45 16 10 C -0.11 -1.51 9.67 -39.59 -0.38 -1.90 16 11 C -0.14 -1.97 10.05 -39.59 -0.40 -2.37 16 12 C -0.12 -1.95 10.05 -39.58 -0.40 -2.35 16 13 C -0.09 -1.65 9.17 -39.58 -0.36 -2.01 16 14 C -0.08 -1.33 5.87 -104.63 -0.61 -1.94 16 15 C 0.18 3.44 5.07 -5.20 -0.03 3.42 16 16 N -0.60 -13.86 1.75 -182.50 -0.32 -14.18 16 17 C 0.16 3.74 8.75 59.85 0.52 4.26 16 18 C -0.26 -6.54 8.92 -15.06 -0.13 -6.67 16 19 H 0.07 1.75 7.84 -52.49 -0.41 1.33 16 20 C 0.00 0.13 5.05 -17.43 -0.09 0.04 16 21 N -0.91 -24.56 10.69 55.49 0.59 -23.96 16 22 Si 0.90 21.07 29.58 -169.99 -5.03 16.04 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 C 0.07 0.75 10.84 -16.95 -0.18 0.56 16 27 N -0.23 -3.14 11.49 30.78 0.35 -2.78 16 28 N -0.23 -2.93 11.40 33.57 0.38 -2.54 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 32 H 0.16 1.35 7.80 -52.48 -0.41 0.94 16 33 H 0.40 4.33 6.62 -40.82 -0.27 4.06 16 34 H 0.07 0.88 7.96 -51.93 -0.41 0.46 16 35 H 0.08 1.10 7.05 -51.93 -0.37 0.74 16 36 H 0.11 1.24 8.01 -52.48 -0.42 0.82 16 37 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 38 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.16 3.81 5.99 -52.48 -0.31 3.49 16 40 H 0.06 1.08 7.79 -51.93 -0.40 0.67 16 41 H 0.05 0.92 7.06 -51.92 -0.37 0.56 16 42 H 0.03 0.80 7.10 -51.93 -0.37 0.43 16 43 H 0.04 1.13 7.22 -51.92 -0.37 0.75 16 44 H 0.00 -0.04 7.86 -51.93 -0.41 -0.45 16 45 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 46 H 0.18 1.61 6.53 -52.49 -0.34 1.27 16 LS Contribution 385.69 15.07 5.81 5.81 Total: -1.00 -30.45 385.69 -8.48 -38.94 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.12 Total: 4.75 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -3.92 Total: -5.49 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.68 Total: -52.12 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.09 Total: -7.93 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.45 -8.48 -38.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484554774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.478 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds