Wall clock time and date at job start Sat Apr 11 2020 06:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38541 * 120.01429 * 2 1 4 4 C 1.40072 * 117.81959 * 179.97438 * 3 2 1 5 5 C 1.48138 * 121.14882 * 179.97438 * 4 3 2 6 6 O 1.21514 * 120.00219 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00106 * 180.02562 * 5 4 3 8 8 C 1.46500 * 119.99975 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.47046 * 179.97438 * 8 7 5 10 10 C 1.38262 * 120.00057 * 256.44094 * 9 8 7 11 11 C 1.38202 * 119.99977 * 179.97438 * 10 9 8 12 12 C 1.38261 * 120.00367 * 359.79203 * 11 10 9 13 13 C 1.38214 * 119.99382 * 0.48251 * 12 11 10 14 14 C 1.38215 * 119.99810 * 76.46228 * 9 8 7 15 15 C 1.50695 * 120.00205 * 359.97438 * 14 9 8 16 16 N 1.46501 * 109.47309 * 173.93432 * 15 14 9 17 17 C 1.46497 * 119.99865 * 273.17094 * 16 15 14 18 18 C 1.36936 * 119.99385 * 93.16602 * 16 15 14 19 19 H 1.07999 * 120.00645 * 19.71230 * 18 16 15 20 20 C 1.38818 * 119.99370 * 199.70356 * 18 16 15 21 21 N 1.31614 * 120.00230 * 15.99693 * 20 18 16 22 22 Si 1.86804 * 119.99743 * 195.99213 * 20 18 16 23 23 H 1.48498 * 109.46982 * 94.98533 * 22 20 18 24 24 H 1.48498 * 109.47015 * 214.98926 * 22 20 18 25 25 H 1.48498 * 109.47157 * 334.99202 * 22 20 18 26 26 C 1.39769 * 117.70939 * 0.25485 * 4 3 2 27 27 N 1.31897 * 119.64957 * 359.48452 * 26 4 3 28 28 N 1.28283 * 122.32912 * 0.54002 * 27 26 4 29 29 H 1.09002 * 109.47544 * 89.99849 * 1 2 3 30 30 H 1.09001 * 109.46955 * 209.99178 * 1 2 3 31 31 H 1.08996 * 109.47339 * 329.99534 * 1 2 3 32 32 H 1.08003 * 121.09074 * 359.96457 * 3 2 1 33 33 H 0.97002 * 120.00041 * 359.97438 * 7 5 4 34 34 H 1.08996 * 109.47128 * 59.99768 * 8 7 5 35 35 H 1.08999 * 109.46917 * 299.99141 * 8 7 5 36 36 H 1.08005 * 119.99484 * 359.97438 * 10 9 8 37 37 H 1.08001 * 120.00394 * 180.02562 * 11 10 9 38 38 H 1.07992 * 120.00593 * 180.25861 * 12 11 10 39 39 H 1.08006 * 119.99866 * 179.77128 * 13 12 11 40 40 H 1.09001 * 109.47484 * 293.94170 * 15 14 9 41 41 H 1.09008 * 109.46964 * 53.93334 * 15 14 9 42 42 H 1.09000 * 109.47262 * 95.42041 * 17 16 15 43 43 H 1.09008 * 109.46807 * 215.41211 * 17 16 15 44 44 H 1.08999 * 109.47524 * 335.41234 * 17 16 15 45 45 H 0.97006 * 120.00167 * 179.97438 * 21 20 18 46 46 H 1.07992 * 120.17945 * 179.73250 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1996 0.0000 4 6 3.5997 1.1460 0.0006 5 6 4.4139 2.3835 0.0000 6 8 3.8688 3.4695 -0.0014 7 7 5.7594 2.3049 0.0001 8 6 6.5646 3.5288 -0.0010 9 6 8.0277 3.1675 -0.0001 10 6 8.7658 3.2756 1.1640 11 6 10.1073 2.9437 1.1649 12 6 10.7105 2.4996 0.0028 13 6 9.9740 2.3969 -1.1622 14 6 8.6318 2.7285 -1.1632 15 6 7.8274 2.6106 -2.4320 16 7 8.7172 2.2684 -3.5444 17 6 9.4013 3.3291 -4.2881 18 6 8.9094 0.9571 -3.8888 19 1 8.1957 0.2075 -3.5804 20 6 10.0217 0.5913 -4.6345 21 7 11.0407 1.4170 -4.7446 22 14 10.0722 -1.0729 -5.4814 23 1 9.6180 -0.9267 -6.8876 24 1 11.4618 -1.5962 -5.4619 25 1 9.1770 -2.0188 -4.7680 26 6 4.2017 -0.1154 -0.0044 27 7 3.4483 -1.1980 0.0009 28 7 2.1667 -1.1419 0.0004 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 1.6781 2.1452 -0.0006 33 1 6.1946 1.4380 0.0008 34 1 6.3351 4.1155 0.8884 35 1 6.3351 4.1139 -0.8916 36 1 8.2938 3.6194 2.0726 37 1 10.6838 3.0277 2.0743 38 1 11.7578 2.2363 0.0045 39 1 10.4460 2.0535 -2.0710 40 1 7.0757 1.8300 -2.3145 41 1 7.3349 3.5607 -2.6396 42 1 10.4024 3.4708 -3.8809 43 1 9.4730 3.0479 -5.3388 44 1 8.8376 4.2576 -4.1981 45 1 11.8181 1.1612 -5.2654 46 1 5.2780 -0.2032 -0.0086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484554774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:53 Heat of formation + Delta-G solvation = 57.133925 kcal Electronic energy + Delta-G solvation = -28908.120862 eV Core-core repulsion = 24991.404693 eV Total energy + Delta-G solvation = -3916.716169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.37922 -40.95275 -40.05626 -37.37903 -36.21590 -35.02480 -34.46326 -33.71309 -32.25307 -31.47939 -29.30379 -28.22954 -27.84430 -27.17463 -25.55451 -24.79128 -23.85677 -22.28377 -21.79557 -21.43458 -19.33359 -18.74184 -18.70892 -17.57967 -17.21013 -17.00329 -16.86661 -16.59780 -16.25013 -15.83535 -15.69060 -15.50148 -15.33544 -14.76772 -14.69932 -14.59725 -14.40765 -14.00592 -13.83219 -13.63071 -13.57001 -13.30513 -13.23289 -13.01616 -12.82553 -12.57108 -12.30980 -12.11219 -12.03378 -11.95199 -11.85303 -11.67050 -11.61187 -11.39135 -10.85499 -10.77424 -10.61971 -10.24301 -9.62831 -9.38983 -8.85619 -7.82161 -5.26958 -0.81832 -0.25484 0.39794 0.67823 1.45184 1.48343 1.54940 1.57747 1.94220 2.47431 2.50852 2.88978 2.99838 3.18380 3.32030 3.37848 3.47446 3.65631 3.72341 3.76769 4.08381 4.11696 4.20520 4.32163 4.39214 4.41759 4.60865 4.63484 4.73366 4.75514 4.76664 4.81172 4.82792 4.84573 4.99673 5.03863 5.18222 5.23130 5.26797 5.31202 5.39011 5.61760 5.65429 5.70936 5.86643 5.98723 6.25695 6.29494 6.34183 6.90024 7.15430 7.51327 7.86219 8.29642 9.20760 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009421 B = 0.003463 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.462566 B = 8084.622776 C = 9892.205200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.068 3.932 3 C -0.053 4.053 4 C -0.134 4.134 5 C 0.569 3.431 6 O -0.555 6.555 7 N -0.702 5.702 8 C 0.173 3.827 9 C -0.118 4.118 10 C -0.101 4.101 11 C -0.129 4.129 12 C -0.128 4.128 13 C -0.116 4.116 14 C -0.088 4.088 15 C 0.183 3.817 16 N -0.609 5.609 17 C 0.176 3.824 18 C -0.254 4.254 19 H 0.070 0.930 20 C -0.044 4.044 21 N -0.930 5.930 22 Si 0.955 3.045 23 H -0.292 1.292 24 H -0.297 1.297 25 H -0.271 1.271 26 C 0.065 3.935 27 N -0.267 5.267 28 N -0.259 5.259 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.182 0.818 33 H 0.410 0.590 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.008 0.992 43 H 0.017 0.983 44 H 0.024 0.976 45 H 0.247 0.753 46 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.080 3.195 14.777 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.077 4.077 3 C -0.083 4.083 4 C -0.148 4.148 5 C 0.354 3.646 6 O -0.434 6.434 7 N -0.353 5.353 8 C 0.050 3.950 9 C -0.119 4.119 10 C -0.120 4.120 11 C -0.147 4.147 12 C -0.146 4.146 13 C -0.135 4.135 14 C -0.091 4.091 15 C 0.057 3.943 16 N -0.331 5.331 17 C 0.031 3.969 18 C -0.384 4.384 19 H 0.087 0.913 20 C -0.239 4.239 21 N -0.577 5.577 22 Si 0.785 3.215 23 H -0.219 1.219 24 H -0.224 1.224 25 H -0.195 1.195 26 C -0.101 4.101 27 N -0.105 5.105 28 N -0.102 5.102 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.199 0.801 33 H 0.247 0.753 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.167 0.833 37 H 0.163 0.837 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.027 0.973 43 H 0.036 0.964 44 H 0.042 0.958 45 H 0.056 0.944 46 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -15.362 2.289 14.668 21.363 hybrid contribution 1.364 0.124 -1.070 1.738 sum -13.998 2.413 13.598 19.664 Atomic orbital electron populations 1.20884 0.84048 1.05715 1.05150 1.23527 1.01162 0.89028 0.94010 1.22793 0.92754 1.01536 0.91239 1.21224 0.95872 0.94625 1.03043 1.17924 0.82334 0.87772 0.76550 1.90780 1.72299 1.29285 1.51012 1.45954 1.05052 1.11103 1.73154 1.20156 0.85318 0.85999 1.03490 1.19638 0.95082 1.03786 0.93401 1.21240 0.94011 0.99259 0.97466 1.21326 0.95467 0.99890 0.98023 1.21391 1.00047 0.99849 0.93352 1.21447 0.94912 0.98298 0.98821 1.20986 0.94964 0.96916 0.96247 1.19969 0.91412 0.98733 0.84152 1.44075 1.52762 1.02848 1.33415 1.20561 0.94071 0.87685 0.94578 1.19416 1.03778 0.85467 1.29752 0.91264 1.25503 0.95144 1.00449 1.02825 1.70208 1.05821 1.37596 1.44028 0.85429 0.76441 0.80940 0.78731 1.21924 1.22404 1.19548 1.24785 1.03362 0.88481 0.93437 1.73013 0.99765 1.27866 1.09894 1.72782 1.01988 1.26585 1.08798 0.88283 0.89369 0.87464 0.80089 0.75285 0.88852 0.90919 0.83263 0.83684 0.86509 0.86921 0.91846 0.92090 0.97334 0.96435 0.95754 0.94401 0.79202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.19 71.23 0.73 -0.22 16 2 C 0.07 1.23 6.86 42.62 0.29 1.52 16 3 C -0.05 -0.96 9.43 22.79 0.21 -0.74 16 4 C -0.13 -2.80 5.92 -19.83 -0.12 -2.91 16 5 C 0.57 13.11 7.80 86.87 0.68 13.79 16 6 O -0.55 -15.60 16.49 -3.76 -0.06 -15.66 16 7 N -0.70 -14.89 5.27 -469.43 -2.47 -17.37 16 8 C 0.17 3.88 5.16 85.63 0.44 4.32 16 9 C -0.12 -3.09 5.25 -19.86 -0.10 -3.20 16 10 C -0.10 -2.31 9.67 22.27 0.22 -2.09 16 11 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 12 C -0.13 -4.15 10.05 22.27 0.22 -3.92 16 13 C -0.12 -4.61 9.17 22.27 0.20 -4.41 16 14 C -0.09 -3.04 5.87 -19.87 -0.12 -3.16 16 15 C 0.18 6.91 5.07 85.63 0.43 7.35 16 16 N -0.61 -28.84 1.75 -731.30 -1.28 -30.12 16 17 C 0.18 8.50 8.75 127.77 1.12 9.62 16 18 C -0.25 -13.25 8.92 84.04 0.75 -12.50 16 19 H 0.07 3.54 7.84 -2.91 -0.02 3.52 16 20 C -0.04 -2.35 5.05 84.86 0.43 -1.92 16 21 N -0.93 -52.75 10.69 21.65 0.23 -52.52 16 22 Si 0.95 44.38 29.58 68.60 2.03 46.41 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 26 C 0.07 1.42 10.84 85.05 0.92 2.34 16 27 N -0.27 -7.00 11.49 -56.53 -0.65 -7.65 16 28 N -0.26 -6.37 11.40 -47.69 -0.54 -6.92 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.11 0.50 8.09 -2.39 -0.02 0.48 16 32 H 0.18 2.50 7.80 -2.91 -0.02 2.48 16 33 H 0.41 7.93 6.62 -92.71 -0.61 7.32 16 34 H 0.09 1.81 7.96 -2.39 -0.02 1.80 16 35 H 0.07 1.81 7.05 -2.39 -0.02 1.79 16 36 H 0.15 2.39 8.01 -2.91 -0.02 2.37 16 37 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 38 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 39 H 0.11 5.64 5.99 -2.91 -0.02 5.62 16 40 H 0.06 2.29 7.79 -2.39 -0.02 2.27 16 41 H 0.06 2.15 7.06 -2.38 -0.02 2.13 16 42 H 0.01 0.44 7.10 -2.39 -0.02 0.43 16 43 H 0.02 0.90 7.22 -2.38 -0.02 0.88 16 44 H 0.02 1.01 7.86 -2.39 -0.02 0.99 16 45 H 0.25 13.78 8.31 -92.70 -0.77 13.01 16 46 H 0.19 3.28 6.53 -2.91 -0.02 3.26 16 Total: -1.00 -68.59 385.69 4.19 -64.39 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.40 Total: 18.56 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 6.53 Total: 0.87 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -4.71 Total: -114.58 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.06 Total: -15.66 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -68.59 4.19 -64.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484554774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.527 kcal (2) G-P(sol) polarization free energy of solvation -68.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds