Wall clock time and date at job start Sat Apr 11 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38801 * 120.43114 * 2 1 4 4 C 1.39492 * 118.26858 * 180.02562 * 3 2 1 5 5 C 1.48451 * 120.55532 * 180.02562 * 4 3 2 6 6 O 1.21480 * 119.99463 * 359.97438 * 5 4 3 7 7 N 1.34770 * 120.00082 * 180.02562 * 5 4 3 8 8 C 1.46501 * 119.99875 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47391 * 179.97438 * 8 7 5 10 10 C 1.38256 * 119.99763 * 255.57811 * 9 8 7 11 11 C 1.38217 * 119.99887 * 180.27289 * 10 9 8 12 12 C 1.38254 * 119.99763 * 359.74312 * 11 10 9 13 13 C 1.38217 * 119.99961 * 359.97438 * 12 11 10 14 14 C 1.38211 * 119.99835 * 75.31757 * 9 8 7 15 15 C 1.50695 * 120.00382 * 0.02562 * 14 9 8 16 16 N 1.46502 * 109.47069 * 173.70470 * 15 14 9 17 17 C 1.46503 * 119.99905 * 274.34968 * 16 15 14 18 18 C 1.36938 * 119.99881 * 94.35525 * 16 15 14 19 19 H 1.07997 * 119.99807 * 22.69738 * 18 16 15 20 20 C 1.38810 * 119.99808 * 202.69504 * 18 16 15 21 21 N 1.31617 * 119.99914 * 11.60607 * 20 18 16 22 22 Si 1.86803 * 119.99884 * 191.60095 * 20 18 16 23 23 H 1.48499 * 109.46977 * 90.00662 * 22 20 18 24 24 H 1.48497 * 109.46933 * 210.00298 * 22 20 18 25 25 H 1.48495 * 109.47062 * 330.00403 * 22 20 18 26 26 N 1.33106 * 118.89612 * 0.27668 * 4 3 2 27 27 C 1.31556 * 120.73934 * 359.44269 * 26 4 3 28 28 N 1.31910 * 121.91377 * 0.56975 * 27 26 4 29 29 H 1.09001 * 109.47288 * 89.99555 * 1 2 3 30 30 H 1.08996 * 109.47486 * 209.99937 * 1 2 3 31 31 H 1.08998 * 109.47196 * 330.00257 * 1 2 3 32 32 H 1.08006 * 120.86716 * 0.04663 * 3 2 1 33 33 H 0.96997 * 120.00610 * 359.97438 * 7 5 4 34 34 H 1.09002 * 109.47619 * 59.99382 * 8 7 5 35 35 H 1.09001 * 109.47047 * 299.99669 * 8 7 5 36 36 H 1.08005 * 120.00171 * 0.03835 * 10 9 8 37 37 H 1.07994 * 120.00014 * 179.76634 * 11 10 9 38 38 H 1.07998 * 120.00350 * 180.02562 * 12 11 10 39 39 H 1.08008 * 119.99553 * 179.97438 * 13 12 11 40 40 H 1.09004 * 109.46876 * 293.70450 * 15 14 9 41 41 H 1.09004 * 109.46987 * 53.70321 * 15 14 9 42 42 H 1.08998 * 109.46347 * 94.95900 * 17 16 15 43 43 H 1.09001 * 109.47070 * 214.95685 * 17 16 15 44 44 H 1.09002 * 109.47084 * 334.96208 * 17 16 15 45 45 H 0.97000 * 119.99804 * 179.97438 * 21 20 18 46 46 H 1.08000 * 119.04217 * 180.29207 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1968 0.0000 4 6 3.6039 1.1442 -0.0005 5 6 4.4063 2.3931 0.0000 6 8 3.8494 3.4727 0.0005 7 7 5.7525 2.3292 -0.0011 8 6 6.5443 3.5618 0.0000 9 6 8.0112 3.2166 -0.0009 10 6 8.7528 3.3473 1.1587 11 6 10.0995 3.0361 1.1565 12 6 10.7037 2.5891 -0.0039 13 6 9.9610 2.4529 -1.1616 14 6 8.6140 2.7643 -1.1594 15 6 7.8045 2.6169 -2.4219 16 7 8.6930 2.2705 -3.5341 17 6 9.3789 3.3282 -4.2805 18 6 8.8824 0.9581 -3.8759 19 1 8.1431 0.2181 -3.6074 20 6 10.0246 0.5789 -4.5677 21 7 11.0266 1.4226 -4.6962 22 14 10.1395 -1.1288 -5.3161 23 1 9.6105 -1.0978 -6.7033 24 1 11.5587 -1.5654 -5.3372 25 1 9.3408 -2.0804 -4.5028 26 7 4.2027 -0.0446 -0.0067 27 6 3.4954 -1.1538 -0.0011 28 7 2.1763 -1.1398 -0.0005 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6913 2.1441 0.0008 33 1 6.1972 1.4672 -0.0018 34 1 6.3090 4.1442 0.8909 35 1 6.3077 4.1464 -0.8890 36 1 8.2807 3.6962 2.0652 37 1 10.6796 3.1417 2.0612 38 1 11.7559 2.3455 -0.0056 39 1 10.4332 2.1041 -2.0682 40 1 7.0643 1.8278 -2.2889 41 1 7.2981 3.5570 -2.6407 42 1 10.3775 3.4744 -3.8687 43 1 9.4567 3.0411 -5.3291 44 1 8.8128 4.2562 -4.1988 45 1 11.8248 1.1575 -5.1793 46 1 4.0096 -2.1036 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484555654.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:57 Heat of formation + Delta-G solvation = 48.681057 kcal Electronic energy + Delta-G solvation = -28917.756677 eV Core-core repulsion = 25000.673963 eV Total energy + Delta-G solvation = -3917.082713 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.33222 -40.91385 -40.01998 -37.37685 -36.19879 -35.53144 -33.77276 -33.67783 -32.29646 -31.48456 -29.64397 -28.22316 -27.83001 -27.15196 -25.45711 -24.61685 -23.85464 -22.28690 -21.77040 -21.42599 -19.47813 -18.74045 -18.50140 -17.39910 -17.03072 -16.97363 -16.68857 -16.52740 -16.36402 -16.17610 -15.59578 -15.50398 -15.48338 -14.91420 -14.76935 -14.56254 -14.17571 -14.02262 -13.89379 -13.63596 -13.53892 -13.29190 -13.20330 -13.00691 -12.82552 -12.56823 -12.31192 -12.06960 -12.02970 -11.95758 -11.85086 -11.65986 -11.64001 -11.61430 -10.70055 -10.63191 -10.46205 -10.21428 -9.63013 -9.39441 -8.82693 -7.81438 -5.30408 -0.64076 -0.15963 0.39788 0.67212 1.45546 1.47074 1.54713 1.58489 1.94287 2.50546 2.70819 2.80728 3.00594 3.04484 3.32542 3.42372 3.65289 3.73518 3.76602 3.92495 4.06975 4.19895 4.33190 4.38006 4.39881 4.48705 4.58485 4.72526 4.73598 4.75203 4.79841 4.81208 4.82309 5.01455 5.02785 5.19717 5.22336 5.30779 5.33473 5.38300 5.61512 5.64702 5.70267 5.73876 5.85950 5.98523 6.26727 6.32028 6.35208 6.84222 6.96198 7.15977 7.85064 8.30010 9.20997 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009468 B = 0.003485 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.761758 B = 8033.427151 C = 9832.041920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.176 3.824 3 C -0.172 4.172 4 C 0.117 3.883 5 C 0.569 3.431 6 O -0.553 6.553 7 N -0.691 5.691 8 C 0.170 3.830 9 C -0.119 4.119 10 C -0.103 4.103 11 C -0.128 4.128 12 C -0.128 4.128 13 C -0.117 4.117 14 C -0.088 4.088 15 C 0.186 3.814 16 N -0.609 5.609 17 C 0.177 3.823 18 C -0.257 4.257 19 H 0.065 0.935 20 C -0.042 4.042 21 N -0.931 5.931 22 Si 0.960 3.040 23 H -0.289 1.289 24 H -0.295 1.295 25 H -0.272 1.272 26 N -0.517 5.517 27 C 0.295 3.705 28 N -0.519 5.519 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.172 0.828 33 H 0.415 0.585 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.010 0.990 43 H 0.018 0.982 44 H 0.021 0.979 45 H 0.247 0.753 46 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.025 0.242 14.589 21.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.028 3.972 3 C -0.195 4.195 4 C -0.030 4.030 5 C 0.353 3.647 6 O -0.431 6.431 7 N -0.341 5.341 8 C 0.047 3.953 9 C -0.120 4.120 10 C -0.121 4.121 11 C -0.146 4.146 12 C -0.146 4.146 13 C -0.135 4.135 14 C -0.091 4.091 15 C 0.060 3.940 16 N -0.331 5.331 17 C 0.032 3.968 18 C -0.387 4.387 19 H 0.083 0.917 20 C -0.238 4.238 21 N -0.577 5.577 22 Si 0.789 3.211 23 H -0.216 1.216 24 H -0.221 1.221 25 H -0.197 1.197 26 N -0.234 5.234 27 C 0.007 3.993 28 N -0.235 5.235 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.189 0.811 33 H 0.252 0.748 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.028 0.972 43 H 0.037 0.963 44 H 0.040 0.960 45 H 0.057 0.943 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -15.754 0.189 14.472 21.393 hybrid contribution 0.791 -0.623 -0.984 1.408 sum -14.963 -0.433 13.488 20.150 Atomic orbital electron populations 1.20962 0.84380 1.05678 1.05161 1.22468 0.99671 0.86998 0.88049 1.23006 0.93888 1.02441 1.00131 1.21591 0.92827 0.92293 0.96255 1.17979 0.82516 0.87281 0.76919 1.90764 1.71741 1.29097 1.51463 1.45958 1.05186 1.11218 1.71738 1.20204 0.85762 0.85893 1.03393 1.19652 0.94953 1.03727 0.93662 1.21237 0.94090 0.99433 0.97338 1.21330 0.95291 0.99912 0.98091 1.21398 1.00079 0.99795 0.93332 1.21465 0.94732 0.98294 0.99000 1.20969 0.95066 0.96886 0.96213 1.19915 0.91367 0.98328 0.84420 1.44037 1.52988 1.02923 1.33183 1.20566 0.94037 0.87604 0.94544 1.19388 1.01511 0.85547 1.32262 0.91742 1.25613 0.95059 1.00645 1.02485 1.70189 1.05592 1.36187 1.45744 0.85376 0.76411 0.80873 0.78449 1.21625 1.22131 1.19652 1.68357 1.42559 0.98907 1.13581 1.25539 0.86771 0.97225 0.89718 1.68338 1.10587 1.30995 1.13591 0.88092 0.89008 0.87761 0.81068 0.74838 0.88816 0.90956 0.83320 0.83473 0.86257 0.86720 0.92419 0.92380 0.97152 0.96320 0.96020 0.94318 0.75666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.22 71.23 0.73 -0.24 16 2 C 0.18 3.12 6.83 42.64 0.29 3.41 16 3 C -0.17 -3.50 9.41 22.71 0.21 -3.28 16 4 C 0.12 2.94 6.79 41.98 0.29 3.23 16 5 C 0.57 15.93 7.83 86.97 0.68 16.61 16 6 O -0.55 -17.44 16.43 -3.65 -0.06 -17.50 16 7 N -0.69 -18.67 5.19 -469.12 -2.43 -21.10 16 8 C 0.17 4.48 5.15 85.63 0.44 4.92 16 9 C -0.12 -3.52 5.25 -19.87 -0.10 -3.63 16 10 C -0.10 -2.61 9.67 22.27 0.22 -2.40 16 11 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 12 C -0.13 -4.36 10.05 22.27 0.22 -4.14 16 13 C -0.12 -4.88 9.16 22.27 0.20 -4.68 16 14 C -0.09 -3.32 5.87 -19.87 -0.12 -3.44 16 15 C 0.19 7.62 5.05 85.63 0.43 8.06 16 16 N -0.61 -30.21 1.74 -731.29 -1.27 -31.48 16 17 C 0.18 8.84 8.67 127.77 1.11 9.95 16 18 C -0.26 -13.90 9.01 84.03 0.76 -13.14 16 19 H 0.06 3.46 7.82 -2.91 -0.02 3.44 16 20 C -0.04 -2.33 5.13 84.86 0.44 -1.90 16 21 N -0.93 -53.49 10.62 21.65 0.23 -53.26 16 22 Si 0.96 44.89 29.57 68.60 2.03 46.92 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 26 N -0.52 -12.89 9.70 -189.17 -1.84 -14.72 16 27 C 0.30 6.19 12.28 180.92 2.22 8.41 16 28 N -0.52 -10.63 10.36 -188.11 -1.95 -12.58 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 0.56 8.10 -2.39 -0.02 0.54 16 32 H 0.17 2.96 7.74 -2.91 -0.02 2.94 16 33 H 0.41 11.52 7.85 -92.71 -0.73 10.79 16 34 H 0.09 2.14 7.96 -2.39 -0.02 2.12 16 35 H 0.07 2.05 7.10 -2.39 -0.02 2.03 16 36 H 0.15 2.78 8.01 -2.91 -0.02 2.75 16 37 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 38 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 39 H 0.11 5.94 5.94 -2.91 -0.02 5.93 16 40 H 0.06 2.36 7.71 -2.38 -0.02 2.34 16 41 H 0.06 2.24 7.09 -2.38 -0.02 2.22 16 42 H 0.01 0.55 6.97 -2.39 -0.02 0.54 16 43 H 0.02 0.98 7.27 -2.39 -0.02 0.97 16 44 H 0.02 0.94 7.88 -2.39 -0.02 0.92 16 45 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 46 H 0.23 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -67.72 387.52 3.23 -64.48 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.28 Total: 24.73 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 8.24 Total: 14.52 kcal Atomic # 7 Polarization: -125.89 SS G_CDS: -7.26 Total: -133.15 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.06 Total: -17.50 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.72 3.23 -64.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484555654.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.164 kcal (2) G-P(sol) polarization free energy of solvation -67.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds