Wall clock time and date at job start Sat Apr 11 2020 06:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38770 * 119.90595 * 2 1 4 4 N 1.31778 * 120.12166 * 180.02562 * 3 2 1 5 5 C 1.33034 * 119.92395 * 0.02562 * 4 3 2 6 6 C 1.48144 * 120.09184 * 180.02562 * 5 4 3 7 7 O 1.21516 * 120.00378 * 179.97438 * 6 5 4 8 8 N 1.34780 * 120.00023 * 0.02562 * 6 5 4 9 9 C 1.46503 * 119.99921 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47103 * 179.97438 * 9 8 6 11 11 C 1.38229 * 119.99758 * 269.72703 * 10 9 8 12 12 C 1.38239 * 119.99724 * 179.81034 * 11 10 9 13 13 C 1.38232 * 120.00050 * 0.41854 * 12 11 10 14 14 C 1.50694 * 120.00105 * 179.79121 * 13 12 11 15 15 H 1.09000 * 109.47463 * 160.01974 * 14 13 12 16 16 C 1.53003 * 109.47174 * 280.01861 * 14 13 12 17 17 N 1.46500 * 109.47393 * 40.02054 * 14 13 12 18 18 C 1.36940 * 120.00440 * 154.99829 * 17 14 13 19 19 H 1.08006 * 119.99805 * 0.02562 * 18 17 14 20 20 C 1.38802 * 120.00138 * 180.02562 * 18 17 14 21 21 N 1.31624 * 120.00051 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00197 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47128 * 90.00157 * 22 20 18 24 24 H 1.48506 * 109.47076 * 210.00166 * 22 20 18 25 25 H 1.48499 * 109.47125 * 330.00029 * 22 20 18 26 26 C 1.38243 * 119.99910 * 359.81310 * 13 12 11 27 27 C 1.38233 * 120.00013 * 359.97438 * 26 13 12 28 28 C 1.39391 * 119.81213 * 359.97438 * 5 4 3 29 29 N 1.32109 * 119.87945 * 0.02562 * 28 5 4 30 30 H 1.08997 * 109.47586 * 269.98103 * 1 2 3 31 31 H 1.09001 * 109.46935 * 29.98142 * 1 2 3 32 32 H 1.09002 * 109.47261 * 149.97558 * 1 2 3 33 33 H 1.08001 * 119.93862 * 0.04185 * 3 2 1 34 34 H 0.96993 * 120.00266 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.46836 * 299.99992 * 9 8 6 36 36 H 1.08997 * 109.46948 * 59.99956 * 9 8 6 37 37 H 1.08001 * 120.00288 * 359.97438 * 11 10 9 38 38 H 1.07996 * 119.99825 * 180.20588 * 12 11 10 39 39 H 1.09002 * 109.46817 * 179.97438 * 16 14 13 40 40 H 1.08996 * 109.47128 * 300.00412 * 16 14 13 41 41 H 1.09004 * 109.46569 * 60.00427 * 16 14 13 42 42 H 0.97004 * 119.99761 * 335.00568 * 17 14 13 43 43 H 0.96998 * 120.00312 * 180.02562 * 21 20 18 44 44 H 1.07994 * 119.99618 * 179.97438 * 26 13 12 45 45 H 1.07996 * 119.99820 * 179.97438 * 27 26 13 46 46 H 1.07999 * 120.06165 * 179.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.2029 0.0000 4 7 3.5167 1.2079 -0.0005 5 6 4.1846 0.0574 -0.0015 6 6 5.6661 0.0586 -0.0015 7 8 6.2746 -0.9932 -0.0020 8 7 6.3390 1.2264 0.0000 9 6 7.8040 1.2276 0.0006 10 6 8.3052 2.6489 0.0017 11 6 8.5409 3.2996 -1.1949 12 6 8.9969 4.6046 -1.1938 13 6 9.2254 5.2559 0.0038 14 6 9.7270 6.6769 0.0050 15 1 9.5156 7.1361 0.9707 16 6 11.2366 6.6852 -0.2441 17 7 9.0533 7.4335 -1.0533 18 6 8.9302 8.7935 -0.9507 19 1 9.3302 9.3084 -0.0897 20 6 8.2915 9.5102 -1.9532 21 7 8.1737 10.8174 -1.8548 22 14 7.5991 8.6195 -3.4421 23 1 6.1936 8.2233 -3.1725 24 1 7.6419 9.5203 -4.6220 25 1 8.4114 7.4068 -3.7154 26 6 8.9943 4.6035 1.2005 27 6 8.5341 3.3000 1.1995 28 6 3.4867 -1.1492 -0.0015 29 7 2.1656 -1.1453 -0.0010 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6563 2.1368 0.0007 34 1 5.8534 2.0660 0.0015 35 1 8.1674 0.7131 0.8902 36 1 8.1681 0.7151 -0.8898 37 1 8.3663 2.7893 -2.1306 38 1 9.1778 5.1140 -2.1287 39 1 11.5992 7.7131 -0.2437 40 1 11.7378 6.1223 0.5433 41 1 11.4479 6.2261 -1.2099 42 1 8.6943 6.9710 -1.8268 43 1 7.7270 11.3182 -2.5552 44 1 9.1732 5.1123 2.1361 45 1 8.3539 2.7903 2.1344 46 1 4.0249 -2.0855 -0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484556513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:02 Heat of formation + Delta-G solvation = 47.809285 kcal Electronic energy + Delta-G solvation = -27568.133937 eV Core-core repulsion = 23651.013421 eV Total energy + Delta-G solvation = -3917.120516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.75972 -39.94851 -39.19794 -36.20799 -35.25061 -34.60642 -33.34353 -32.36783 -30.92743 -30.65312 -29.25191 -28.64155 -26.21568 -25.07584 -24.09328 -23.55943 -22.75552 -21.66212 -21.15889 -19.85295 -18.74872 -18.20964 -17.95744 -16.46638 -16.15180 -16.10917 -15.90894 -15.56643 -15.25957 -14.90823 -14.82051 -14.31981 -14.12327 -13.80750 -13.45083 -13.36018 -13.22785 -13.18198 -12.98414 -12.84802 -12.62140 -12.38607 -12.28319 -12.15919 -11.81874 -11.67694 -11.41943 -11.10623 -10.93809 -10.76826 -10.69846 -10.38036 -10.09502 -9.77170 -9.64000 -9.61592 -9.35750 -9.03531 -8.79890 -8.48340 -7.33658 -5.81363 -3.17200 -0.10986 0.54463 1.30262 1.52936 2.30462 2.77302 3.29072 3.32918 3.36128 3.41699 3.47939 3.55837 3.86176 3.95291 4.28946 4.50411 4.53248 4.54737 4.65685 4.83908 4.96132 4.99029 5.06593 5.09965 5.12175 5.22498 5.37546 5.39864 5.45420 5.51703 5.60666 5.78067 5.78501 5.89470 6.04586 6.10050 6.16995 6.19526 6.32618 6.48993 6.57770 6.60078 6.60985 6.84038 6.99491 7.04454 7.11906 7.26581 7.77924 7.94023 8.37374 9.14973 9.87403 10.06742 11.36807 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011381 B = 0.002404 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.670556 B =11645.841684 C =13390.053191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.102 3.898 3 C 0.053 3.947 4 N -0.406 5.406 5 C 0.019 3.981 6 C 0.575 3.425 7 O -0.532 6.532 8 N -0.702 5.702 9 C 0.165 3.835 10 C -0.131 4.131 11 C -0.097 4.097 12 C -0.115 4.115 13 C -0.054 4.054 14 C 0.209 3.791 15 H 0.066 0.934 16 C -0.160 4.160 17 N -0.745 5.745 18 C -0.243 4.243 19 H 0.092 0.908 20 C 0.006 3.994 21 N -0.932 5.932 22 Si 0.882 3.118 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.278 1.278 26 C -0.118 4.118 27 C -0.098 4.098 28 C 0.116 3.884 29 N -0.443 5.443 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.179 0.821 34 H 0.414 0.586 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.062 0.938 40 H 0.041 0.959 41 H 0.047 0.953 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.124 0.876 45 H 0.120 0.880 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.218 -23.791 5.458 26.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.040 4.040 3 C -0.110 4.110 4 N -0.123 5.123 5 C -0.122 4.122 6 C 0.359 3.641 7 O -0.408 6.408 8 N -0.353 5.353 9 C 0.043 3.957 10 C -0.131 4.131 11 C -0.116 4.116 12 C -0.133 4.133 13 C -0.055 4.055 14 C 0.100 3.900 15 H 0.083 0.917 16 C -0.220 4.220 17 N -0.389 5.389 18 C -0.373 4.373 19 H 0.110 0.890 20 C -0.190 4.190 21 N -0.580 5.580 22 Si 0.712 3.288 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.204 1.204 26 C -0.136 4.136 27 C -0.116 4.116 28 C -0.044 4.044 29 N -0.158 5.158 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.196 0.804 34 H 0.251 0.749 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.196 0.804 43 H 0.070 0.930 44 H 0.142 0.858 45 H 0.138 0.862 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -9.695 -24.291 5.526 26.732 hybrid contribution -0.743 0.054 -1.205 1.417 sum -10.439 -24.237 4.321 26.741 Atomic orbital electron populations 1.20789 0.87055 1.04513 1.03996 1.22724 0.98992 0.89681 0.92569 1.23749 0.90082 0.99655 0.97521 1.68358 1.09365 1.28549 1.06027 1.22154 0.95795 0.91122 1.03109 1.17629 0.84999 0.84320 0.77163 1.90809 1.68403 1.31219 1.50397 1.46013 1.07462 1.08941 1.72860 1.20245 0.78619 0.93724 1.03145 1.19628 1.04305 0.95295 0.93880 1.21006 0.98635 0.94764 0.97156 1.21040 0.99556 0.94215 0.98476 1.20553 0.95290 0.96840 0.92858 1.19227 0.91116 0.85909 0.93762 0.91653 1.22391 0.97494 1.01871 1.00235 1.42869 1.69229 1.05071 1.21744 1.19062 1.31232 0.81164 1.05853 0.89045 1.24649 1.00737 0.95282 0.98314 1.69695 1.48325 1.05052 1.34922 0.86596 0.79369 0.78958 0.83864 1.20999 1.21649 1.20423 1.21040 1.00150 0.94560 0.97881 1.20965 0.98843 0.94786 0.97023 1.23828 0.89932 0.99300 0.91293 1.68503 1.08244 1.29008 1.10040 0.89347 0.89624 0.89735 0.80422 0.74921 0.90354 0.90389 0.86273 0.85880 0.91875 0.93949 0.93428 0.80445 0.93006 0.85763 0.86238 0.79945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.40 10.19 36.01 0.37 -0.04 16 2 C 0.10 0.75 6.79 -82.27 -0.56 0.19 16 3 C 0.05 0.40 10.88 -17.38 -0.19 0.21 16 4 N -0.41 -4.06 9.71 -9.62 -0.09 -4.16 16 5 C 0.02 0.20 6.75 -82.85 -0.56 -0.36 16 6 C 0.58 6.71 7.81 -12.19 -0.10 6.61 16 7 O -0.53 -7.30 16.35 5.35 0.09 -7.22 16 8 N -0.70 -7.54 5.54 -62.33 -0.35 -7.88 16 9 C 0.17 1.72 5.80 -5.19 -0.03 1.69 16 10 C -0.13 -1.52 5.25 -104.62 -0.55 -2.07 16 11 C -0.10 -1.25 9.70 -39.58 -0.38 -1.64 16 12 C -0.11 -1.76 9.06 -39.58 -0.36 -2.12 16 13 C -0.05 -0.87 4.95 -104.63 -0.52 -1.39 16 14 C 0.21 3.91 3.09 -69.08 -0.21 3.69 16 15 H 0.07 1.25 7.94 -51.93 -0.41 0.83 16 16 C -0.16 -2.73 9.47 37.16 0.35 -2.38 16 17 N -0.75 -17.18 4.87 -54.55 -0.27 -17.44 16 18 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 19 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 21 N -0.93 -28.89 13.97 55.49 0.78 -28.11 16 22 Si 0.88 21.83 27.74 -169.99 -4.71 17.12 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 26 C -0.12 -1.60 9.67 -39.58 -0.38 -1.98 16 27 C -0.10 -1.15 9.70 -39.58 -0.38 -1.54 16 28 C 0.12 1.12 10.77 -17.00 -0.18 0.94 16 29 N -0.44 -4.12 10.41 -8.95 -0.09 -4.22 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.17 8.08 -51.93 -0.42 -0.25 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.41 4.40 7.81 -40.82 -0.32 4.08 16 35 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 36 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 38 H 0.12 1.99 6.92 -52.49 -0.36 1.63 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.36 8.21 3.93 -40.82 -0.16 8.05 16 43 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 44 H 0.12 1.50 8.04 -52.49 -0.42 1.07 16 45 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 46 H 0.18 1.54 7.65 -52.49 -0.40 1.13 16 LS Contribution 392.92 15.07 5.92 5.92 Total: -1.00 -33.51 392.92 -8.98 -42.49 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -6.31 Total: 10.44 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -3.94 Total: -6.95 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: -0.02 Total: -61.81 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: 0.09 Total: -7.22 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.12 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.51 -8.98 -42.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484556513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.303 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds