Wall clock time and date at job start Sat Apr 11 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.79892 * 2 1 4 4 N 1.46499 * 109.47203 * 56.70885 * 3 2 1 5 5 C 1.36946 * 119.99730 * 179.97438 * 4 3 2 6 6 H 1.07992 * 120.00096 * 0.02562 * 5 4 3 7 7 C 1.38817 * 119.99462 * 179.97438 * 5 4 3 8 8 N 1.31614 * 120.00179 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99389 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47001 * 90.00664 * 9 7 5 11 11 H 1.48503 * 109.46768 * 210.00081 * 9 7 5 12 12 H 1.48491 * 109.47446 * 330.00343 * 9 7 5 13 13 C 1.54617 * 110.74054 * 236.70904 * 2 1 3 14 14 C 1.54004 * 105.04187 * 263.51424 * 13 2 1 15 15 N 1.47480 * 107.08694 * 1.30151 * 14 13 2 16 16 C 1.34778 * 127.03390 * 154.52041 * 15 14 13 17 17 O 1.21511 * 119.99846 * 180.02562 * 16 15 14 18 18 C 1.48228 * 120.00117 * 0.02562 * 16 15 14 19 19 C 1.40572 * 119.74994 * 179.97438 * 18 16 15 20 20 N 1.31262 * 120.57169 * 180.02562 * 19 18 16 21 21 C 1.33789 * 119.80668 * 0.02562 * 20 19 18 22 22 C 1.40543 * 121.00026 * 180.02562 * 21 20 19 23 23 C 1.36078 * 119.75277 * 179.97438 * 22 21 20 24 24 C 1.39481 * 121.01428 * 359.97438 * 23 22 21 25 25 C 1.35991 * 120.98125 * 359.77705 * 24 23 22 26 26 C 1.40816 * 119.69986 * 0.47233 * 25 24 23 27 27 N 1.32167 * 119.74606 * 359.97438 * 18 16 15 28 28 C 1.48121 * 105.93048 * 334.78297 * 15 14 13 29 29 H 1.09000 * 109.47343 * 183.29225 * 1 2 3 30 30 H 1.09005 * 109.47213 * 303.28863 * 1 2 3 31 31 H 1.08991 * 109.47384 * 63.29132 * 1 2 3 32 32 H 1.09005 * 109.47314 * 176.71098 * 3 2 1 33 33 H 1.09006 * 109.47332 * 296.70889 * 3 2 1 34 34 H 0.96998 * 120.00488 * 359.97438 * 4 3 2 35 35 H 0.97002 * 119.99663 * 180.02562 * 8 7 5 36 36 H 1.08996 * 110.33002 * 144.62079 * 13 2 1 37 37 H 1.09001 * 110.40980 * 22.44503 * 13 2 1 38 38 H 1.09002 * 109.91110 * 241.94058 * 14 13 2 39 39 H 1.09002 * 109.91388 * 120.66903 * 14 13 2 40 40 H 1.07997 * 119.71036 * 0.04859 * 19 18 16 41 41 H 1.08002 * 120.12240 * 0.02562 * 22 21 20 42 42 H 1.07996 * 119.49031 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.50874 * 180.02562 * 24 23 22 44 44 H 1.08003 * 120.14923 * 180.23666 * 25 24 23 45 45 H 1.09005 * 110.65550 * 157.50784 * 28 15 14 46 46 H 1.09002 * 110.66180 * 280.62187 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0733 1.4303 0.0000 4 7 1.5379 2.1560 1.1545 5 6 1.8881 3.4633 1.3639 6 1 2.5585 3.9593 0.6778 7 6 1.3804 4.1511 2.4576 8 7 0.5630 3.5467 3.2936 9 14 1.8586 5.9340 2.7437 10 1 0.8921 6.8231 2.0502 11 1 1.8407 6.2238 4.2000 12 1 3.2229 6.1727 2.2082 13 6 2.0775 -0.7937 -1.2087 14 6 2.3762 -2.2014 -0.6603 15 7 1.9871 -2.2038 0.7623 16 6 1.6221 -3.2696 1.5022 17 8 1.3244 -3.1242 2.6713 18 6 1.5839 -4.6189 0.8899 19 6 1.2029 -5.7269 1.6667 20 7 1.1640 -6.9290 1.1411 21 6 1.4898 -7.1035 -0.1448 22 6 1.4562 -8.3794 -0.7333 23 6 1.7922 -8.5277 -2.0436 24 6 2.1706 -7.4304 -2.8171 25 6 2.2106 -6.1794 -2.2853 26 6 1.8751 -5.9858 -0.9315 27 7 1.9082 -4.7712 -0.3823 28 6 2.0733 -0.7945 1.2097 29 1 -0.3634 -1.0260 0.0590 30 1 -0.3634 0.5641 0.8591 31 1 -0.3634 0.4618 -0.9179 32 1 3.1614 1.4057 0.0590 33 1 1.7705 1.9340 -0.9180 34 1 0.9355 1.7106 1.7706 35 1 0.2080 4.0274 4.0576 36 1 2.9910 -0.3314 -1.5828 37 1 1.3291 -0.8463 -1.9994 38 1 3.4402 -2.4185 -0.7545 39 1 1.7935 -2.9437 -1.2058 40 1 0.9397 -5.5877 2.7048 41 1 1.1642 -9.2387 -0.1480 42 1 1.7646 -9.5099 -2.4916 43 1 2.4320 -7.5759 -3.8549 44 1 2.5019 -5.3388 -2.8976 45 1 1.4489 -0.6310 2.0881 46 1 3.1077 -0.5187 1.4151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500353990.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:22 Heat of formation + Delta-G solvation = 61.867702 kcal Electronic energy + Delta-G solvation = -28924.083206 eV Core-core repulsion = 25007.572308 eV Total energy + Delta-G solvation = -3916.510898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.91408 -40.06429 -38.30374 -37.47640 -35.44953 -34.68164 -32.66752 -31.36175 -31.05855 -30.37618 -29.15919 -27.04482 -26.12688 -25.49263 -24.52193 -23.44283 -22.70862 -21.93989 -20.55416 -18.91441 -18.72642 -18.63108 -17.43969 -16.81192 -16.28785 -16.08619 -15.76728 -15.36495 -15.15919 -14.78733 -14.54205 -14.33375 -14.18014 -13.86856 -13.62753 -13.36927 -12.95640 -12.61809 -12.45554 -12.33251 -12.31884 -12.22965 -12.15131 -12.08514 -11.97621 -11.54918 -11.22819 -10.98794 -10.80559 -10.56060 -10.44469 -10.33319 -10.26532 -9.91742 -9.60522 -9.42751 -9.37329 -9.07349 -8.85599 -8.57361 -6.89412 -5.73303 -3.02199 -0.39455 0.00470 1.40742 2.08154 2.74941 2.91072 3.45725 3.47780 3.50739 3.52729 3.64093 3.67050 3.80720 4.24458 4.35826 4.47330 4.60708 4.65257 4.76201 4.81043 4.84123 4.94896 5.07689 5.34827 5.38432 5.43575 5.49397 5.57742 5.61585 5.68931 5.74127 5.83169 5.87142 5.94664 6.03784 6.08735 6.14901 6.15102 6.18511 6.31427 6.41617 6.53851 6.68140 6.72630 6.78457 6.87137 7.20710 7.52114 7.72598 8.01123 8.45244 9.56534 10.13890 10.48303 11.49376 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.002292 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.583268 B =12215.158362 C =12965.516323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 C 0.169 3.831 4 N -0.731 5.731 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.127 4.127 14 C 0.102 3.898 15 N -0.594 5.594 16 C 0.584 3.416 17 O -0.524 6.524 18 C 0.070 3.930 19 C 0.130 3.870 20 N -0.426 5.426 21 C 0.091 3.909 22 C -0.088 4.088 23 C -0.091 4.091 24 C -0.103 4.103 25 C -0.075 4.075 26 C 0.073 3.927 27 N -0.388 5.388 28 C 0.118 3.882 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.022 0.978 33 H 0.024 0.976 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.189 0.811 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.144 0.856 45 H 0.092 0.908 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.254 -25.960 -14.562 29.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.080 4.080 3 C 0.041 3.959 4 N -0.376 5.376 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.165 4.165 14 C -0.021 4.021 15 N -0.325 5.325 16 C 0.369 3.631 17 O -0.400 6.400 18 C -0.086 4.086 19 C -0.046 4.046 20 N -0.139 5.139 21 C -0.034 4.034 22 C -0.107 4.107 23 C -0.111 4.111 24 C -0.123 4.123 25 C -0.094 4.094 26 C -0.053 4.053 27 N -0.106 5.106 28 C -0.003 4.003 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.206 0.794 41 H 0.159 0.841 42 H 0.155 0.845 43 H 0.156 0.844 44 H 0.161 0.839 45 H 0.110 0.890 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.174 -25.907 -14.014 29.625 hybrid contribution 0.087 0.915 0.356 0.986 sum 3.261 -24.992 -13.658 28.666 Atomic orbital electron populations 1.21702 0.93471 1.00570 1.02907 1.21799 0.96600 0.96003 0.93593 1.20627 0.95638 0.87794 0.91810 1.42419 1.56721 1.10908 1.27569 1.19203 1.22866 0.87943 1.07103 0.91222 1.24741 1.00062 0.98293 0.97849 1.69656 1.35997 1.36215 1.16127 0.86202 0.77890 0.85126 0.77022 1.21800 1.21814 1.20816 1.22653 1.01874 0.94151 0.97868 1.22414 1.00462 0.98268 0.80912 1.48647 1.63874 1.07678 1.12330 1.17177 0.78549 0.82020 0.85321 1.90852 1.49460 1.84422 1.15226 1.22524 0.98664 0.96421 0.90985 1.24017 0.91969 0.86678 1.01894 1.68853 1.11278 1.23383 1.10374 1.19827 0.97657 0.95107 0.90808 1.20839 0.99439 0.95241 0.95217 1.21108 0.96697 0.99711 0.93564 1.21056 0.98370 0.92050 1.00780 1.20907 0.98028 0.98455 0.91999 1.19709 1.00386 0.89188 0.96017 1.68819 1.08765 1.22659 1.10353 1.22642 1.02095 0.77110 0.98440 0.93830 0.91072 0.92670 0.96058 0.95839 0.78018 0.93486 0.90349 0.90647 0.91690 0.88563 0.79418 0.84054 0.84491 0.84416 0.83861 0.88962 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.31 37.16 0.31 -1.81 16 2 C -0.08 -1.24 0.65 -152.82 -0.10 -1.34 16 3 C 0.17 3.27 5.11 -4.04 -0.02 3.25 16 4 N -0.73 -18.11 5.16 -59.90 -0.31 -18.42 16 5 C -0.24 -6.66 9.99 -15.05 -0.15 -6.81 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 9 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C -0.13 -1.53 6.09 -25.36 -0.15 -1.69 16 14 C 0.10 1.22 6.07 -2.98 -0.02 1.20 16 15 N -0.59 -8.78 3.19 -170.94 -0.55 -9.32 16 16 C 0.58 9.06 7.89 -12.15 -0.10 8.96 16 17 O -0.52 -9.61 16.53 5.36 0.09 -9.52 16 18 C 0.07 0.92 6.74 -82.74 -0.56 0.36 16 19 C 0.13 1.56 10.75 -16.92 -0.18 1.37 16 20 N -0.43 -5.00 10.45 -10.53 -0.11 -5.11 16 21 C 0.09 0.96 6.60 -84.70 -0.56 0.40 16 22 C -0.09 -0.65 9.98 -39.49 -0.39 -1.05 16 23 C -0.09 -0.46 9.95 -39.89 -0.40 -0.86 16 24 C -0.10 -0.52 9.95 -39.93 -0.40 -0.92 16 25 C -0.07 -0.54 9.99 -39.41 -0.39 -0.94 16 26 C 0.07 0.76 6.60 -84.79 -0.56 0.20 16 27 N -0.39 -4.58 6.82 -7.39 -0.05 -4.63 16 28 C 0.12 1.98 5.65 -2.31 -0.01 1.97 16 29 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 30 H 0.07 1.37 6.69 -51.93 -0.35 1.02 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.02 0.42 8.10 -51.93 -0.42 -0.01 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.39 10.10 6.21 -40.82 -0.25 9.85 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 37 H 0.07 0.82 7.87 -51.93 -0.41 0.41 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.10 1.09 5.88 -51.93 -0.31 0.78 16 40 H 0.19 2.01 7.62 -52.49 -0.40 1.61 16 41 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.14 0.30 8.06 -52.49 -0.42 -0.13 16 43 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 44 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 45 H 0.09 1.79 7.75 -51.93 -0.40 1.39 16 46 H 0.08 1.34 8.01 -51.93 -0.42 0.93 16 LS Contribution 378.72 15.07 5.71 5.71 Total: -1.00 -33.43 378.72 -9.58 -43.01 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.29 Total: 6.57 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -3.78 Total: 1.83 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: -0.29 Total: -65.08 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.43 -9.58 -43.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500353990.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.879 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds