Wall clock time and date at job start Sat Apr 11 2020 06:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.79892 * 2 1 4 4 N 1.46499 * 109.47203 * 56.70885 * 3 2 1 5 5 C 1.36946 * 119.99730 * 179.97438 * 4 3 2 6 6 H 1.07992 * 120.00096 * 0.02562 * 5 4 3 7 7 C 1.38817 * 119.99462 * 179.97438 * 5 4 3 8 8 N 1.31614 * 120.00179 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99389 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47001 * 90.00664 * 9 7 5 11 11 H 1.48503 * 109.46768 * 210.00081 * 9 7 5 12 12 H 1.48491 * 109.47446 * 330.00343 * 9 7 5 13 13 C 1.54617 * 110.74054 * 236.70904 * 2 1 3 14 14 C 1.54004 * 105.04187 * 263.51424 * 13 2 1 15 15 N 1.47480 * 107.08694 * 1.30151 * 14 13 2 16 16 C 1.34778 * 127.03390 * 154.52041 * 15 14 13 17 17 O 1.21511 * 119.99846 * 180.02562 * 16 15 14 18 18 C 1.48228 * 120.00117 * 0.02562 * 16 15 14 19 19 C 1.40572 * 119.74994 * 179.97438 * 18 16 15 20 20 N 1.31262 * 120.57169 * 180.02562 * 19 18 16 21 21 C 1.33789 * 119.80668 * 0.02562 * 20 19 18 22 22 C 1.40543 * 121.00026 * 180.02562 * 21 20 19 23 23 C 1.36078 * 119.75277 * 179.97438 * 22 21 20 24 24 C 1.39481 * 121.01428 * 359.97438 * 23 22 21 25 25 C 1.35991 * 120.98125 * 359.77705 * 24 23 22 26 26 C 1.40816 * 119.69986 * 0.47233 * 25 24 23 27 27 N 1.32167 * 119.74606 * 359.97438 * 18 16 15 28 28 C 1.48121 * 105.93048 * 334.78297 * 15 14 13 29 29 H 1.09000 * 109.47343 * 183.29225 * 1 2 3 30 30 H 1.09005 * 109.47213 * 303.28863 * 1 2 3 31 31 H 1.08991 * 109.47384 * 63.29132 * 1 2 3 32 32 H 1.09005 * 109.47314 * 176.71098 * 3 2 1 33 33 H 1.09006 * 109.47332 * 296.70889 * 3 2 1 34 34 H 0.96998 * 120.00488 * 359.97438 * 4 3 2 35 35 H 0.97002 * 119.99663 * 180.02562 * 8 7 5 36 36 H 1.08996 * 110.33002 * 144.62079 * 13 2 1 37 37 H 1.09001 * 110.40980 * 22.44503 * 13 2 1 38 38 H 1.09002 * 109.91110 * 241.94058 * 14 13 2 39 39 H 1.09002 * 109.91388 * 120.66903 * 14 13 2 40 40 H 1.07997 * 119.71036 * 0.04859 * 19 18 16 41 41 H 1.08002 * 120.12240 * 0.02562 * 22 21 20 42 42 H 1.07996 * 119.49031 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.50874 * 180.02562 * 24 23 22 44 44 H 1.08003 * 120.14923 * 180.23666 * 25 24 23 45 45 H 1.09005 * 110.65550 * 157.50784 * 28 15 14 46 46 H 1.09002 * 110.66180 * 280.62187 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0733 1.4303 0.0000 4 7 1.5379 2.1560 1.1545 5 6 1.8881 3.4633 1.3639 6 1 2.5585 3.9593 0.6778 7 6 1.3804 4.1511 2.4576 8 7 0.5630 3.5467 3.2936 9 14 1.8586 5.9340 2.7437 10 1 0.8921 6.8231 2.0502 11 1 1.8407 6.2238 4.2000 12 1 3.2229 6.1727 2.2082 13 6 2.0775 -0.7937 -1.2087 14 6 2.3762 -2.2014 -0.6603 15 7 1.9871 -2.2038 0.7623 16 6 1.6221 -3.2696 1.5022 17 8 1.3244 -3.1242 2.6713 18 6 1.5839 -4.6189 0.8899 19 6 1.2029 -5.7269 1.6667 20 7 1.1640 -6.9290 1.1411 21 6 1.4898 -7.1035 -0.1448 22 6 1.4562 -8.3794 -0.7333 23 6 1.7922 -8.5277 -2.0436 24 6 2.1706 -7.4304 -2.8171 25 6 2.2106 -6.1794 -2.2853 26 6 1.8751 -5.9858 -0.9315 27 7 1.9082 -4.7712 -0.3823 28 6 2.0733 -0.7945 1.2097 29 1 -0.3634 -1.0260 0.0590 30 1 -0.3634 0.5641 0.8591 31 1 -0.3634 0.4618 -0.9179 32 1 3.1614 1.4057 0.0590 33 1 1.7705 1.9340 -0.9180 34 1 0.9355 1.7106 1.7706 35 1 0.2080 4.0274 4.0576 36 1 2.9910 -0.3314 -1.5828 37 1 1.3291 -0.8463 -1.9994 38 1 3.4402 -2.4185 -0.7545 39 1 1.7935 -2.9437 -1.2058 40 1 0.9397 -5.5877 2.7048 41 1 1.1642 -9.2387 -0.1480 42 1 1.7646 -9.5099 -2.4916 43 1 2.4320 -7.5759 -3.8549 44 1 2.5019 -5.3388 -2.8976 45 1 1.4489 -0.6310 2.0881 46 1 3.1077 -0.5187 1.4151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500353990.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:21 Heat of formation + Delta-G solvation = 40.005988 kcal Electronic energy + Delta-G solvation = -28925.031201 eV Core-core repulsion = 25007.572308 eV Total energy + Delta-G solvation = -3917.458893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.70753 -41.21739 -39.43167 -38.27377 -36.62544 -36.02655 -34.29934 -32.39030 -31.93128 -31.58546 -30.43923 -28.22966 -27.54613 -26.63166 -25.55695 -24.85801 -23.49667 -23.23140 -21.52931 -20.21299 -19.62075 -19.48758 -19.05897 -18.01707 -17.33315 -17.27304 -16.62295 -16.58157 -16.16621 -15.86039 -15.56551 -15.45502 -15.39068 -15.16472 -14.88510 -14.71010 -14.52103 -13.94504 -13.62664 -13.48980 -13.27632 -13.02488 -12.96330 -12.92977 -12.90117 -12.78110 -12.74852 -12.71375 -12.34392 -12.13590 -12.04834 -11.73089 -11.59267 -11.47117 -11.34015 -10.92022 -10.27632 -10.14703 -9.75672 -9.63341 -8.95949 -7.92037 -5.20459 -1.14733 -0.71901 0.73357 1.26968 1.47755 1.49728 1.58095 1.62305 2.00875 2.57288 2.61631 2.89797 2.94187 3.06427 3.33874 3.41931 3.61363 3.65484 3.68564 3.85938 3.93582 4.10895 4.18423 4.24935 4.33362 4.35061 4.37642 4.39470 4.65543 4.72305 4.77197 4.79144 4.87238 4.94826 4.97659 5.05763 5.06932 5.08987 5.13539 5.15607 5.29801 5.34719 5.35862 5.47655 5.53258 5.68446 5.92523 6.29563 6.30845 6.44896 6.82594 7.36121 8.13449 8.35085 9.31684 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.002292 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.583268 B =12215.158362 C =12965.516323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.072 4.072 3 C 0.168 3.832 4 N -0.745 5.745 5 C -0.239 4.239 6 H 0.080 0.920 7 C -0.080 4.080 8 N -0.972 5.972 9 Si 0.973 3.027 10 H -0.287 1.287 11 H -0.300 1.300 12 H -0.267 1.267 13 C -0.114 4.114 14 C 0.106 3.894 15 N -0.594 5.594 16 C 0.581 3.419 17 O -0.567 6.567 18 C 0.048 3.952 19 C 0.117 3.883 20 N -0.438 5.438 21 C 0.075 3.925 22 C -0.109 4.109 23 C -0.066 4.066 24 C -0.084 4.084 25 C -0.085 4.085 26 C 0.056 3.944 27 N -0.384 5.384 28 C 0.122 3.878 29 H 0.049 0.951 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.033 0.967 34 H 0.373 0.627 35 H 0.249 0.751 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.186 0.814 41 H 0.152 0.848 42 H 0.177 0.823 43 H 0.179 0.821 44 H 0.161 0.839 45 H 0.053 0.947 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.689 -28.068 -19.144 34.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.073 4.073 3 C 0.042 3.958 4 N -0.388 5.388 5 C -0.371 4.371 6 H 0.097 0.903 7 C -0.272 4.272 8 N -0.623 5.623 9 Si 0.803 3.197 10 H -0.214 1.214 11 H -0.227 1.227 12 H -0.192 1.192 13 C -0.153 4.153 14 C -0.016 4.016 15 N -0.325 5.325 16 C 0.368 3.632 17 O -0.446 6.446 18 C -0.107 4.107 19 C -0.057 4.057 20 N -0.152 5.152 21 C -0.051 4.051 22 C -0.128 4.128 23 C -0.086 4.086 24 C -0.104 4.104 25 C -0.104 4.104 26 C -0.072 4.072 27 N -0.102 5.102 28 C -0.001 4.001 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.206 0.794 35 H 0.058 0.942 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.203 0.797 41 H 0.170 0.830 42 H 0.195 0.805 43 H 0.196 0.804 44 H 0.179 0.821 45 H 0.071 0.929 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.641 -28.011 -18.649 33.970 hybrid contribution -0.308 1.319 1.538 2.049 sum 4.333 -26.692 -17.112 32.001 Atomic orbital electron populations 1.21602 0.94009 1.00399 1.01814 1.21666 0.96021 0.94383 0.95212 1.20808 0.95812 0.89249 0.89972 1.42662 1.56655 1.10531 1.28956 1.19658 1.21714 0.89109 1.06601 0.90250 1.25587 1.00886 1.02536 0.98196 1.69838 1.37919 1.37756 1.16804 0.85136 0.78165 0.80214 0.76225 1.21443 1.22667 1.19201 1.22651 1.03130 0.93149 0.96322 1.22585 1.01529 0.98527 0.78961 1.48698 1.63666 1.06558 1.13568 1.17589 0.77610 0.83054 0.84927 1.90810 1.51384 1.85288 1.17152 1.21993 1.01788 0.94934 0.91962 1.23933 0.92930 0.86871 1.01973 1.68848 1.11830 1.22915 1.11563 1.20343 0.97610 0.96683 0.90418 1.21111 1.00754 0.94256 0.96648 1.21650 0.93026 1.01626 0.92249 1.21591 0.95554 0.90810 1.02463 1.21223 0.98312 1.00337 0.90565 1.20177 1.01021 0.88499 0.97479 1.68684 1.08229 1.23800 1.09487 1.22407 1.00944 0.78998 0.97711 0.93171 0.94883 0.91220 0.95309 0.94869 0.79398 0.94215 0.88437 0.88492 0.90213 0.87424 0.79671 0.83036 0.80524 0.80383 0.82143 0.92880 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 8.31 71.98 0.60 -3.43 16 2 C -0.07 -2.25 0.65 -51.09 -0.03 -2.28 16 3 C 0.17 6.42 5.11 86.38 0.44 6.86 16 4 N -0.74 -37.82 5.16 -343.44 -1.77 -39.59 16 5 C -0.24 -13.37 9.99 84.03 0.84 -12.53 16 6 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 7 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 8 N -0.97 -61.41 13.06 21.65 0.28 -61.13 16 9 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 10 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 11 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 C -0.11 -2.46 6.09 31.48 0.19 -2.27 16 14 C 0.11 2.33 6.07 86.53 0.53 2.85 16 15 N -0.59 -18.07 3.19 -813.04 -2.60 -20.67 16 16 C 0.58 19.27 7.89 86.90 0.69 19.96 16 17 O -0.57 -22.90 16.53 -3.75 -0.06 -22.96 16 18 C 0.05 1.30 6.74 42.32 0.29 1.59 16 19 C 0.12 3.04 10.75 85.35 0.92 3.96 16 20 N -0.44 -10.59 10.45 -187.22 -1.96 -12.55 16 21 C 0.08 1.50 6.60 40.34 0.27 1.77 16 22 C -0.11 -1.32 9.98 22.33 0.22 -1.10 16 23 C -0.07 -0.34 9.95 22.07 0.22 -0.12 16 24 C -0.08 -0.40 9.95 22.05 0.22 -0.18 16 25 C -0.09 -0.92 9.99 22.38 0.22 -0.69 16 26 C 0.06 1.07 6.60 40.48 0.27 1.34 16 27 N -0.38 -8.83 6.82 -177.29 -1.21 -10.04 16 28 C 0.12 4.28 5.65 86.61 0.49 4.77 16 29 H 0.05 1.58 8.07 -2.39 -0.02 1.56 16 30 H 0.03 1.34 6.69 -2.38 -0.02 1.32 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.03 1.08 8.10 -2.38 -0.02 1.06 16 33 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.37 20.66 6.21 -92.71 -0.58 20.09 16 35 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.10 1.79 7.85 -2.39 -0.02 1.77 16 37 H 0.10 1.74 7.87 -2.39 -0.02 1.72 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.11 2.18 5.88 -2.39 -0.01 2.17 16 40 H 0.19 4.59 7.62 -2.91 -0.02 4.57 16 41 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.18 -0.42 8.06 -2.91 -0.02 -0.44 16 43 H 0.18 -0.49 8.06 -2.91 -0.02 -0.51 16 44 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 45 H 0.05 2.27 7.75 -2.38 -0.02 2.25 16 46 H 0.07 2.65 8.01 -2.39 -0.02 2.63 16 Total: -1.00 -77.60 378.72 1.97 -75.63 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.43 Total: 26.01 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 6.83 Total: 16.27 kcal Atomic # 7 Polarization: -136.73 SS G_CDS: -7.25 Total: -143.98 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.06 Total: -22.96 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -77.60 1.97 -75.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500353990.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.637 kcal (2) G-P(sol) polarization free energy of solvation -77.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds