Wall clock time and date at job start Sat Apr 11 2020 06:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35083 * 119.94913 * 2 1 4 4 N 1.35430 * 122.50427 * 180.02562 * 3 2 1 5 5 H 0.97000 * 119.20192 * 179.97438 * 4 3 2 6 6 C 1.37638 * 121.59927 * 0.02562 * 4 3 2 7 7 C 1.39216 * 121.15735 * 179.97438 * 6 4 3 8 8 C 1.37756 * 119.70091 * 180.02562 * 7 6 4 9 9 C 1.38848 * 120.71363 * 359.97438 * 8 7 6 10 10 C 1.36675 * 120.55386 * 0.02562 * 9 8 7 11 11 C 1.39536 * 119.66987 * 359.66210 * 10 9 8 12 12 C 1.41302 * 119.94641 * 180.02562 * 2 1 3 13 13 N 1.33612 * 121.10120 * 359.95823 * 12 2 1 14 14 C 1.33569 * 120.00172 * 343.42307 * 13 12 2 15 15 O 1.21885 * 119.99926 * 307.12103 * 14 13 12 16 16 N 1.34773 * 120.00254 * 127.11770 * 14 13 12 17 17 C 1.46968 * 120.59644 * 180.02562 * 16 14 13 18 18 C 1.53373 * 108.63368 * 235.24828 * 17 16 14 19 19 N 1.46964 * 108.63634 * 310.57399 * 18 17 16 20 20 C 1.36933 * 120.59244 * 235.20002 * 19 18 17 21 21 H 1.08008 * 119.99318 * 148.89313 * 20 19 18 22 22 C 1.38805 * 120.00489 * 328.62074 * 20 19 18 23 23 N 1.31619 * 119.99617 * 349.98369 * 22 20 19 24 24 Si 1.86800 * 120.00131 * 169.99118 * 22 20 19 25 25 H 1.48507 * 109.46908 * 59.99894 * 24 22 20 26 26 H 1.48498 * 109.47059 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47117 * 299.99652 * 24 22 20 28 28 C 1.46963 * 118.80968 * 55.48297 * 19 18 17 29 29 C 1.46964 * 120.59315 * 0.02562 * 16 14 13 30 30 H 1.08995 * 109.47508 * 264.91966 * 1 2 3 31 31 H 1.09002 * 109.46781 * 24.92348 * 1 2 3 32 32 H 1.09006 * 109.46436 * 144.91821 * 1 2 3 33 33 H 1.07997 * 118.74602 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.14408 * 0.04390 * 7 6 4 35 35 H 1.07994 * 119.64274 * 179.97438 * 8 7 6 36 36 H 1.07996 * 119.71907 * 180.02562 * 9 8 7 37 37 H 1.08001 * 120.16530 * 180.02562 * 10 9 8 38 38 H 1.08996 * 109.60848 * 115.50360 * 17 16 14 39 39 H 1.09002 * 109.60883 * 354.99293 * 17 16 14 40 40 H 1.08999 * 109.60397 * 190.82823 * 18 17 16 41 41 H 1.08999 * 109.74675 * 70.40603 * 18 17 16 42 42 H 0.97007 * 119.99777 * 179.97438 * 23 22 20 43 43 H 1.09000 * 109.61609 * 64.26108 * 28 19 18 44 44 H 1.09002 * 109.61385 * 184.77812 * 28 19 18 45 45 H 1.09001 * 109.61444 * 244.49397 * 29 16 14 46 46 H 1.09000 * 109.60956 * 4.83987 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1814 1.1705 0.0000 4 7 3.5343 1.2308 -0.0005 5 1 3.9694 2.0978 -0.0009 6 6 4.3071 0.0918 -0.0016 7 6 5.6973 0.1646 -0.0026 8 6 6.4415 -0.9946 -0.0042 9 6 5.8200 -2.2363 -0.0043 10 6 4.4566 -2.3308 -0.0033 11 6 3.6837 -1.1691 0.0050 12 6 2.2124 -1.2244 -0.0005 13 7 1.5656 -2.3935 -0.0002 14 6 0.2724 -2.4413 0.3306 15 8 -0.1070 -1.9489 1.3790 16 7 -0.6129 -3.0339 -0.4949 17 6 -2.0389 -3.0933 -0.1441 18 6 -2.4914 -4.5584 -0.1786 19 7 -2.0481 -5.1571 -1.4454 20 6 -2.9475 -5.7601 -2.2836 21 1 -2.7835 -5.7469 -3.3511 22 6 -4.0668 -6.3932 -1.7611 23 7 -4.1669 -6.5877 -0.4632 24 14 -5.4309 -6.9691 -2.8999 25 1 -4.8838 -7.9509 -3.8706 26 1 -6.5055 -7.6104 -2.1003 27 1 -5.9875 -5.8045 -3.6341 28 6 -0.6213 -5.1027 -1.7935 29 6 -0.1697 -3.6322 -1.7619 30 1 -0.3634 -0.0910 1.0236 31 1 -0.3633 0.9320 -0.4331 32 1 -0.3632 -0.8410 -0.5907 33 1 1.6202 2.0932 -0.0004 34 1 6.1901 1.1257 -0.0019 35 1 7.5199 -0.9371 -0.0055 36 1 6.4191 -3.1348 -0.0051 37 1 3.9797 -3.2998 -0.0029 38 1 -2.6172 -2.5148 -0.8644 39 1 -2.1866 -2.6883 0.8571 40 1 -3.5782 -4.6072 -0.1113 41 1 -2.0485 -5.1004 0.6570 42 1 -4.9494 -7.0298 -0.0980 43 1 -0.0459 -5.6806 -1.0703 44 1 -0.4727 -5.5110 -2.7931 45 1 -0.6153 -3.0920 -2.5973 46 1 0.9169 -3.5803 -1.8306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001562894136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:38 Heat of formation + Delta-G solvation = 96.529106 kcal Electronic energy + Delta-G solvation = -29712.812354 eV Core-core repulsion = 25797.804487 eV Total energy + Delta-G solvation = -3915.007866 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.33522 -39.82728 -37.62995 -36.90887 -35.17505 -33.67188 -32.41554 -31.39608 -30.98960 -30.35134 -29.72573 -27.20105 -26.53849 -24.53489 -23.64362 -23.10409 -22.57418 -22.16475 -20.39794 -18.97288 -18.39111 -18.10288 -17.74662 -16.77421 -16.28823 -15.69570 -15.24064 -15.00372 -14.73652 -14.65659 -14.40746 -14.25782 -13.74459 -13.51626 -13.39601 -13.32596 -13.20458 -13.04944 -12.78136 -12.36129 -12.23644 -11.77613 -11.61061 -11.51396 -11.30382 -11.10443 -10.90606 -10.74534 -10.57809 -10.45180 -10.11905 -10.04937 -9.85239 -9.69728 -9.34526 -9.02438 -8.80561 -8.47677 -8.00230 -7.45333 -6.51859 -5.72944 -3.23770 0.36277 0.77876 1.43421 2.59266 2.67441 3.34814 3.40630 3.45706 3.46722 3.63501 3.86791 4.18512 4.30610 4.50089 4.52302 4.62961 4.83836 4.90664 4.99130 5.21426 5.32969 5.43858 5.48911 5.53435 5.60839 5.77898 5.87321 5.92694 5.97651 5.99739 6.05090 6.17030 6.18247 6.31929 6.37381 6.42674 6.49819 6.55930 6.61714 6.70385 6.71245 6.86922 6.93550 7.15174 7.46626 7.73815 7.78239 7.81008 8.31655 8.50497 9.12446 9.24801 9.85787 10.45387 11.33250 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.002693 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.330959 B =10394.570275 C =11053.140028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.226 4.226 3 C 0.155 3.845 4 N -0.611 5.611 5 H 0.418 0.582 6 C 0.184 3.816 7 C -0.176 4.176 8 C -0.061 4.061 9 C -0.160 4.160 10 C -0.025 4.025 11 C -0.108 4.108 12 C 0.330 3.670 13 N -0.593 5.593 14 C 0.672 3.328 15 O -0.597 6.597 16 N -0.597 5.597 17 C 0.096 3.904 18 C 0.159 3.841 19 N -0.592 5.592 20 C -0.253 4.253 21 H 0.065 0.935 22 C 0.003 3.997 23 N -0.905 5.905 24 Si 0.907 3.093 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.133 3.867 29 C 0.099 3.901 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.162 0.838 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.145 0.855 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.021 0.979 42 H 0.255 0.745 43 H 0.023 0.977 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.414 19.289 -0.407 28.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.236 4.236 3 C 0.024 3.976 4 N -0.219 5.219 5 H 0.254 0.746 6 C 0.080 3.920 7 C -0.197 4.197 8 C -0.080 4.080 9 C -0.180 4.180 10 C -0.045 4.045 11 C -0.113 4.113 12 C 0.162 3.838 13 N -0.325 5.325 14 C 0.375 3.625 15 O -0.479 6.479 16 N -0.331 5.331 17 C -0.029 4.029 18 C 0.032 3.968 19 N -0.315 5.315 20 C -0.383 4.383 21 H 0.082 0.918 22 C -0.195 4.195 23 N -0.549 5.549 24 Si 0.737 3.263 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.210 1.210 28 C 0.005 3.995 29 C -0.026 4.026 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.179 0.821 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.162 0.838 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.119 0.881 41 H 0.039 0.961 42 H 0.065 0.935 43 H 0.041 0.959 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 20.938 18.403 0.100 27.876 hybrid contribution -0.949 0.466 -0.511 1.174 sum 19.989 18.869 -0.410 27.491 Atomic orbital electron populations 1.21270 0.89051 1.01817 1.04579 1.20102 0.97797 0.92017 1.13712 1.21349 0.82399 0.99694 0.94117 1.41062 1.04993 1.08204 1.67639 0.74641 1.17870 0.91090 0.85731 0.97277 1.20564 0.90277 0.99745 1.09132 1.21095 0.99995 0.91785 0.95168 1.20908 0.94686 0.97986 1.04386 1.21020 0.93204 0.98320 0.91934 1.18410 0.91143 0.92099 1.09598 1.19658 0.90931 0.88160 0.85100 1.68147 1.10966 1.25638 1.27710 1.16838 0.82841 0.78343 0.84469 1.90879 1.79759 1.50711 1.26517 1.47607 1.07747 1.57713 1.19999 1.22433 0.78778 1.01458 1.00223 1.21212 1.01400 0.86787 0.87362 1.43970 1.01013 1.65115 1.21440 1.19153 1.02147 1.28100 0.88918 0.91765 1.25201 1.00443 0.97972 0.95923 1.69954 1.29276 1.45123 1.10541 0.86309 0.81600 0.78560 0.79866 1.20888 1.21605 1.20984 1.21372 0.87104 0.92159 0.98826 1.22267 0.99023 0.96532 0.84732 0.88344 0.93049 0.90779 0.82051 0.85100 0.85258 0.85242 0.83762 0.92504 0.90314 0.88122 0.96075 0.93458 0.95870 0.91906 0.92628 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 8.00 36.01 0.29 -1.35 16 2 C -0.23 -3.02 5.73 -104.58 -0.60 -3.62 16 3 C 0.15 1.29 10.68 -17.09 -0.18 1.11 16 4 N -0.61 -3.93 5.31 -10.78 -0.06 -3.99 16 5 H 0.42 0.97 8.79 -40.82 -0.36 0.61 16 6 C 0.18 1.63 6.66 -83.98 -0.56 1.07 16 7 C -0.18 -1.13 9.92 -39.39 -0.39 -1.52 16 8 C -0.06 -0.40 10.01 -39.53 -0.40 -0.79 16 9 C -0.16 -1.32 9.97 -39.92 -0.40 -1.72 16 10 C -0.02 -0.28 9.60 -39.66 -0.38 -0.66 16 11 C -0.11 -1.33 5.89 -104.84 -0.62 -1.95 16 12 C 0.33 5.12 6.62 -82.27 -0.54 4.57 16 13 N -0.59 -11.12 8.34 -13.07 -0.11 -11.23 16 14 C 0.67 14.18 4.79 -88.00 -0.42 13.76 16 15 O -0.60 -13.77 12.98 5.02 0.07 -13.71 16 16 N -0.60 -12.65 2.25 -178.21 -0.40 -13.05 16 17 C 0.10 2.12 6.58 -3.59 -0.02 2.10 16 18 C 0.16 4.10 5.46 -3.60 -0.02 4.08 16 19 N -0.59 -15.60 2.96 -171.74 -0.51 -16.11 16 20 C -0.25 -7.10 9.58 -15.06 -0.14 -7.24 16 21 H 0.06 1.74 7.85 -52.48 -0.41 1.33 16 22 C 0.00 0.09 5.07 -17.43 -0.09 0.00 16 23 N -0.90 -26.89 10.98 55.49 0.61 -26.28 16 24 Si 0.91 21.98 29.57 -169.99 -5.03 16.96 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 C 0.13 2.99 6.70 -3.34 -0.02 2.97 16 29 C 0.10 1.97 6.61 -3.34 -0.02 1.95 16 30 H 0.10 1.71 6.13 -51.93 -0.32 1.39 16 31 H 0.05 0.59 8.00 -51.93 -0.42 0.17 16 32 H 0.07 1.32 4.98 -51.93 -0.26 1.06 16 33 H 0.16 0.74 8.00 -52.49 -0.42 0.32 16 34 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 35 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.14 1.78 7.71 -52.49 -0.40 1.38 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.08 1.74 6.99 -51.93 -0.36 1.38 16 40 H 0.10 2.81 5.99 -51.93 -0.31 2.50 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 1.33 7.93 -51.93 -0.41 0.92 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.08 1.43 6.83 -51.93 -0.35 1.08 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -36.65 365.82 -10.56 -47.21 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.12 Total: 1.92 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: -4.52 Total: 12.76 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -0.47 Total: -70.66 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.07 Total: -13.71 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.65 -10.56 -47.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001562894136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.739 kcal (2) G-P(sol) polarization free energy of solvation -36.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds