Wall clock time and date at job start Sat Apr 11 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35083 * 119.94913 * 2 1 4 4 N 1.35430 * 122.50427 * 180.02562 * 3 2 1 5 5 H 0.97000 * 119.20192 * 179.97438 * 4 3 2 6 6 C 1.37638 * 121.59927 * 0.02562 * 4 3 2 7 7 C 1.39216 * 121.15735 * 179.97438 * 6 4 3 8 8 C 1.37756 * 119.70091 * 180.02562 * 7 6 4 9 9 C 1.38848 * 120.71363 * 359.97438 * 8 7 6 10 10 C 1.36675 * 120.55386 * 0.02562 * 9 8 7 11 11 C 1.39536 * 119.66987 * 359.66210 * 10 9 8 12 12 C 1.41302 * 119.94641 * 180.02562 * 2 1 3 13 13 N 1.33612 * 121.10120 * 359.95823 * 12 2 1 14 14 C 1.33569 * 120.00172 * 343.42307 * 13 12 2 15 15 O 1.21885 * 119.99926 * 307.12103 * 14 13 12 16 16 N 1.34773 * 120.00254 * 127.11770 * 14 13 12 17 17 C 1.46968 * 120.59644 * 180.02562 * 16 14 13 18 18 C 1.53373 * 108.63368 * 235.24828 * 17 16 14 19 19 N 1.46964 * 108.63634 * 310.57399 * 18 17 16 20 20 C 1.36933 * 120.59244 * 235.20002 * 19 18 17 21 21 H 1.08008 * 119.99318 * 148.89313 * 20 19 18 22 22 C 1.38805 * 120.00489 * 328.62074 * 20 19 18 23 23 N 1.31619 * 119.99617 * 349.98369 * 22 20 19 24 24 Si 1.86800 * 120.00131 * 169.99118 * 22 20 19 25 25 H 1.48507 * 109.46908 * 59.99894 * 24 22 20 26 26 H 1.48498 * 109.47059 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47117 * 299.99652 * 24 22 20 28 28 C 1.46963 * 118.80968 * 55.48297 * 19 18 17 29 29 C 1.46964 * 120.59315 * 0.02562 * 16 14 13 30 30 H 1.08995 * 109.47508 * 264.91966 * 1 2 3 31 31 H 1.09002 * 109.46781 * 24.92348 * 1 2 3 32 32 H 1.09006 * 109.46436 * 144.91821 * 1 2 3 33 33 H 1.07997 * 118.74602 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.14408 * 0.04390 * 7 6 4 35 35 H 1.07994 * 119.64274 * 179.97438 * 8 7 6 36 36 H 1.07996 * 119.71907 * 180.02562 * 9 8 7 37 37 H 1.08001 * 120.16530 * 180.02562 * 10 9 8 38 38 H 1.08996 * 109.60848 * 115.50360 * 17 16 14 39 39 H 1.09002 * 109.60883 * 354.99293 * 17 16 14 40 40 H 1.08999 * 109.60397 * 190.82823 * 18 17 16 41 41 H 1.08999 * 109.74675 * 70.40603 * 18 17 16 42 42 H 0.97007 * 119.99777 * 179.97438 * 23 22 20 43 43 H 1.09000 * 109.61609 * 64.26108 * 28 19 18 44 44 H 1.09002 * 109.61385 * 184.77812 * 28 19 18 45 45 H 1.09001 * 109.61444 * 244.49397 * 29 16 14 46 46 H 1.09000 * 109.60956 * 4.83987 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1814 1.1705 0.0000 4 7 3.5343 1.2308 -0.0005 5 1 3.9694 2.0978 -0.0009 6 6 4.3071 0.0918 -0.0016 7 6 5.6973 0.1646 -0.0026 8 6 6.4415 -0.9946 -0.0042 9 6 5.8200 -2.2363 -0.0043 10 6 4.4566 -2.3308 -0.0033 11 6 3.6837 -1.1691 0.0050 12 6 2.2124 -1.2244 -0.0005 13 7 1.5656 -2.3935 -0.0002 14 6 0.2724 -2.4413 0.3306 15 8 -0.1070 -1.9489 1.3790 16 7 -0.6129 -3.0339 -0.4949 17 6 -2.0389 -3.0933 -0.1441 18 6 -2.4914 -4.5584 -0.1786 19 7 -2.0481 -5.1571 -1.4454 20 6 -2.9475 -5.7601 -2.2836 21 1 -2.7835 -5.7469 -3.3511 22 6 -4.0668 -6.3932 -1.7611 23 7 -4.1669 -6.5877 -0.4632 24 14 -5.4309 -6.9691 -2.8999 25 1 -4.8838 -7.9509 -3.8706 26 1 -6.5055 -7.6104 -2.1003 27 1 -5.9875 -5.8045 -3.6341 28 6 -0.6213 -5.1027 -1.7935 29 6 -0.1697 -3.6322 -1.7619 30 1 -0.3634 -0.0910 1.0236 31 1 -0.3633 0.9320 -0.4331 32 1 -0.3632 -0.8410 -0.5907 33 1 1.6202 2.0932 -0.0004 34 1 6.1901 1.1257 -0.0019 35 1 7.5199 -0.9371 -0.0055 36 1 6.4191 -3.1348 -0.0051 37 1 3.9797 -3.2998 -0.0029 38 1 -2.6172 -2.5148 -0.8644 39 1 -2.1866 -2.6883 0.8571 40 1 -3.5782 -4.6072 -0.1113 41 1 -2.0485 -5.1004 0.6570 42 1 -4.9494 -7.0298 -0.0980 43 1 -0.0459 -5.6806 -1.0703 44 1 -0.4727 -5.5110 -2.7931 45 1 -0.6153 -3.0920 -2.5973 46 1 0.9169 -3.5803 -1.8306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001562894136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:37 Heat of formation + Delta-G solvation = 70.895768 kcal Electronic energy + Delta-G solvation = -29713.923898 eV Core-core repulsion = 25797.804487 eV Total energy + Delta-G solvation = -3916.119411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.25704 -41.11494 -38.79344 -38.20943 -36.35910 -35.54334 -33.42903 -33.02751 -32.32534 -31.67563 -30.89377 -28.73405 -27.85975 -25.84975 -25.01420 -24.45860 -23.94270 -23.15466 -21.98960 -20.45476 -19.30566 -19.09021 -18.86830 -18.23187 -17.59752 -17.34918 -16.74974 -16.44482 -15.82640 -15.57031 -15.45695 -15.39308 -15.22162 -15.18888 -14.99668 -14.83071 -14.51960 -14.27511 -13.82753 -13.57274 -13.41251 -13.12199 -12.95485 -12.69480 -12.66201 -12.50110 -12.42402 -12.31529 -12.13501 -12.12382 -12.03270 -11.88271 -11.67235 -11.42364 -10.63025 -10.19095 -10.08369 -9.77858 -9.66350 -8.64656 -8.39640 -7.87293 -5.44481 -0.48437 0.01215 0.70659 1.46610 1.50017 1.57016 1.72391 1.93577 2.02047 2.34581 2.49828 2.94930 3.26647 3.29429 3.55414 3.59193 3.75918 3.95270 4.04498 4.15426 4.23566 4.29043 4.36997 4.38473 4.46377 4.50148 4.52901 4.60664 4.67300 4.78506 4.79754 4.83539 4.94218 5.00247 5.03701 5.12265 5.19618 5.26185 5.36414 5.48385 5.50682 5.58036 5.63807 5.69271 5.79070 5.98657 6.30915 6.35352 6.52129 6.85498 7.07836 7.69128 7.74810 8.32350 9.16834 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.002693 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.330959 B =10394.570275 C =11053.140028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.290 4.290 3 C 0.217 3.783 4 N -0.579 5.579 5 H 0.446 0.554 6 C 0.175 3.825 7 C -0.154 4.154 8 C -0.053 4.053 9 C -0.154 4.154 10 C -0.056 4.056 11 C -0.138 4.138 12 C 0.324 3.676 13 N -0.653 5.653 14 C 0.679 3.321 15 O -0.636 6.636 16 N -0.607 5.607 17 C 0.116 3.884 18 C 0.173 3.827 19 N -0.608 5.608 20 C -0.267 4.267 21 H 0.074 0.926 22 C -0.052 4.052 23 N -0.941 5.941 24 Si 0.980 3.020 25 H -0.273 1.273 26 H -0.294 1.294 27 H -0.273 1.273 28 C 0.132 3.868 29 C 0.118 3.882 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.215 0.785 34 H 0.179 0.821 35 H 0.170 0.830 36 H 0.146 0.854 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.077 0.923 41 H -0.018 1.018 42 H 0.252 0.748 43 H 0.003 0.997 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.364 23.695 -2.150 34.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.301 4.301 3 C 0.082 3.918 4 N -0.187 5.187 5 H 0.288 0.712 6 C 0.071 3.929 7 C -0.174 4.174 8 C -0.072 4.072 9 C -0.173 4.173 10 C -0.076 4.076 11 C -0.143 4.143 12 C 0.164 3.836 13 N -0.391 5.391 14 C 0.383 3.617 15 O -0.520 6.520 16 N -0.341 5.341 17 C -0.010 4.010 18 C 0.046 3.954 19 N -0.331 5.331 20 C -0.397 4.397 21 H 0.092 0.908 22 C -0.247 4.247 23 N -0.587 5.587 24 Si 0.807 3.193 25 H -0.199 1.199 26 H -0.221 1.221 27 H -0.199 1.199 28 C 0.006 3.994 29 C -0.006 4.006 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.232 0.768 34 H 0.196 0.804 35 H 0.187 0.813 36 H 0.164 0.836 37 H 0.133 0.867 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.000 1.000 42 H 0.061 0.939 43 H 0.021 0.979 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 25.037 22.897 -1.672 33.969 hybrid contribution -1.716 -0.645 0.090 1.835 sum 23.321 22.251 -1.582 32.272 Atomic orbital electron populations 1.20944 0.90714 1.01846 1.01870 1.20006 0.97195 0.93105 1.19812 1.21936 0.83057 0.99766 0.87029 1.41258 1.04477 1.09159 1.63759 0.71223 1.18061 0.92413 0.84924 0.97545 1.21121 0.88752 1.01848 1.05728 1.21608 1.02067 0.90688 0.92846 1.21199 0.93324 1.00113 1.02644 1.20940 0.94779 0.97259 0.94604 1.18595 0.89755 0.94245 1.11697 1.20295 0.92608 0.88263 0.82454 1.68050 1.08808 1.27024 1.35170 1.17039 0.83619 0.77263 0.83738 1.90820 1.80837 1.52400 1.27966 1.47597 1.07089 1.58846 1.20600 1.22002 0.80294 0.98540 1.00129 1.20904 0.99523 0.88698 0.86305 1.44213 1.02449 1.65343 1.21144 1.19562 1.02662 1.27839 0.89608 0.90813 1.26081 1.02945 0.98316 0.97381 1.70160 1.29786 1.46151 1.12558 0.85159 0.78122 0.78242 0.77758 1.19862 1.22061 1.19876 1.21485 0.84959 0.94109 0.98840 1.22058 0.99791 0.94171 0.84613 0.92001 0.89771 0.94318 0.76825 0.80361 0.81265 0.83626 0.86724 0.91642 0.91041 0.90523 0.99987 0.93921 0.97888 0.90384 0.91774 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.96 8.00 71.24 0.57 -2.39 16 2 C -0.29 -7.56 5.73 -19.84 -0.11 -7.67 16 3 C 0.22 2.62 10.68 83.41 0.89 3.51 16 4 N -0.58 -4.06 5.31 -188.02 -1.00 -5.06 16 5 H 0.45 -1.42 8.79 -92.71 -0.81 -2.24 16 6 C 0.18 2.35 6.66 39.06 0.26 2.61 16 7 C -0.15 -0.99 9.92 22.39 0.22 -0.77 16 8 C -0.05 -0.40 10.01 22.30 0.22 -0.18 16 9 C -0.15 -2.19 9.97 22.05 0.22 -1.97 16 10 C -0.06 -1.29 9.60 22.22 0.21 -1.08 16 11 C -0.14 -3.32 5.89 -20.01 -0.12 -3.44 16 12 C 0.32 10.45 6.62 41.99 0.28 10.72 16 13 N -0.65 -26.69 8.34 -314.07 -2.62 -29.31 16 14 C 0.68 31.32 4.79 179.43 0.86 32.18 16 15 O -0.64 -32.18 12.98 -4.94 -0.06 -32.24 16 16 N -0.61 -27.90 2.25 -835.88 -1.88 -29.78 16 17 C 0.12 5.58 6.58 86.42 0.57 6.15 16 18 C 0.17 9.66 5.46 86.42 0.47 10.14 16 19 N -0.61 -33.84 2.96 -697.26 -2.06 -35.90 16 20 C -0.27 -15.41 9.58 84.03 0.81 -14.61 16 21 H 0.07 4.04 7.85 -2.91 -0.02 4.02 16 22 C -0.05 -3.04 5.07 84.86 0.43 -2.61 16 23 N -0.94 -58.79 10.98 21.65 0.24 -58.55 16 24 Si 0.98 46.25 29.57 68.60 2.03 48.28 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 27 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 28 C 0.13 6.32 6.70 86.58 0.58 6.90 16 29 C 0.12 4.97 6.61 86.58 0.57 5.54 16 30 H 0.06 2.31 6.13 -2.39 -0.01 2.30 16 31 H 0.08 1.84 8.00 -2.39 -0.02 1.82 16 32 H 0.04 1.47 4.98 -2.38 -0.01 1.45 16 33 H 0.22 0.45 8.00 -2.91 -0.02 0.43 16 34 H 0.18 -0.44 8.06 -2.91 -0.02 -0.46 16 35 H 0.17 0.06 8.06 -2.91 -0.02 0.03 16 36 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 37 H 0.11 3.23 7.71 -2.91 -0.02 3.21 16 38 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.07 3.50 6.99 -2.39 -0.02 3.48 16 40 H 0.08 4.63 5.99 -2.39 -0.01 4.61 16 41 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 42 H 0.25 15.17 8.31 -92.70 -0.77 14.40 16 43 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.08 3.41 7.93 -2.39 -0.02 3.39 16 45 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 46 H 0.09 3.61 6.83 -2.39 -0.02 3.59 16 Total: -1.00 -91.86 365.82 1.78 -90.08 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.21 Total: 9.46 kcal Atomic # 6 Polarization: 36.08 SS G_CDS: 6.93 Total: 43.02 kcal Atomic # 7 Polarization: -151.27 SS G_CDS: -7.32 Total: -158.60 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.06 Total: -32.24 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -91.86 1.78 -90.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001562894136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.978 kcal (2) G-P(sol) polarization free energy of solvation -91.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds