Wall clock time and date at job start Sat Apr 11 2020 06:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46785 * 2 1 4 4 N 1.30106 * 124.94917 * 269.97165 * 3 2 1 5 5 C 1.35787 * 109.64359 * 180.02562 * 4 3 2 6 6 C 1.39734 * 133.60143 * 179.97438 * 5 4 3 7 7 C 1.36605 * 119.88806 * 180.02562 * 6 5 4 8 8 C 1.38776 * 120.66622 * 359.97438 * 7 6 5 9 9 C 1.37851 * 120.45485 * 0.03810 * 8 7 6 10 10 C 1.38832 * 119.68776 * 359.97438 * 9 8 7 11 11 N 1.36036 * 124.94888 * 90.00017 * 3 2 1 12 12 C 1.46505 * 126.35096 * 359.94039 * 11 3 2 13 13 C 1.50696 * 109.47091 * 270.01925 * 12 11 3 14 14 O 1.21288 * 119.99829 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00186 * 179.97438 * 13 12 11 16 16 C 1.46501 * 120.00223 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.46684 * 90.00452 * 16 15 13 18 18 H 1.08001 * 120.00084 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99776 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00187 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00011 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46753 * 59.99694 * 21 19 17 23 23 H 1.48498 * 109.47323 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47291 * 299.99969 * 21 19 17 25 25 C 1.46500 * 119.99644 * 0.02562 * 15 13 12 26 26 C 1.52994 * 109.47559 * 89.99656 * 25 15 13 27 27 C 1.47198 * 109.47201 * 179.97438 * 26 25 15 28 28 N 7.90568 * 106.57257 * 82.84732 * 2 1 3 29 29 H 1.09006 * 109.47054 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47136 * 300.00097 * 1 2 3 31 31 H 1.09003 * 109.46709 * 60.00294 * 1 2 3 32 32 H 1.08993 * 109.47136 * 239.99903 * 2 1 3 33 33 H 1.09003 * 109.46709 * 119.99706 * 2 1 3 34 34 H 1.08009 * 120.05649 * 0.29744 * 6 5 4 35 35 H 1.08001 * 119.66343 * 179.97438 * 7 6 5 36 36 H 1.08002 * 119.77372 * 180.02562 * 8 7 6 37 37 H 1.08000 * 120.15788 * 179.97438 * 9 8 7 38 38 H 1.09001 * 109.46639 * 30.01863 * 12 11 3 39 39 H 1.08995 * 109.47160 * 150.01574 * 12 11 3 40 40 H 1.08998 * 109.47031 * 210.00408 * 16 15 13 41 41 H 1.08997 * 109.47123 * 330.00854 * 16 15 13 42 42 H 0.96998 * 120.00009 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.46651 * 210.00024 * 25 15 13 44 44 H 1.09003 * 109.46993 * 329.99221 * 25 15 13 45 45 H 1.08996 * 109.46961 * 299.99743 * 26 25 15 46 46 H 1.09003 * 109.47324 * 59.99767 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2812 2.1234 -1.0664 5 6 2.7181 3.3581 -0.7080 6 6 3.1179 4.4859 -1.4296 7 6 3.5166 5.6119 -0.7670 8 6 3.5291 5.6498 0.6202 9 6 3.1391 4.5491 1.3528 10 6 2.7310 3.3958 0.6965 11 7 2.2920 2.1556 1.1150 12 6 2.1343 1.7131 2.5027 13 6 0.7410 2.0356 2.9775 14 8 -0.0430 2.5818 2.2305 15 7 0.3660 1.7172 4.2323 16 6 -0.9884 2.0313 4.6941 17 6 -1.9023 0.8706 4.3963 18 1 -1.5133 -0.0124 3.9111 19 6 -3.2354 0.9365 4.7422 20 7 -3.7095 2.0123 5.3315 21 14 -4.3685 -0.5019 4.3724 22 1 -3.8750 -1.7139 5.0744 23 1 -5.7413 -0.1837 4.8405 24 1 -4.3896 -0.7519 2.9087 25 6 1.3132 1.0580 5.1348 26 6 2.0983 2.1165 5.9119 27 6 3.0496 1.4541 6.8191 28 7 3.7850 0.9435 7.5183 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.1075 4.4689 -2.5095 35 1 3.8253 6.4814 -1.3283 36 1 3.8466 6.5478 1.1294 37 1 3.1511 4.5838 2.4322 38 1 2.2984 0.6371 2.5618 39 1 2.8608 2.2265 3.1326 40 1 -0.9726 2.2149 5.7684 41 1 -1.3509 2.9207 4.1787 42 1 -4.6472 2.0585 5.5752 43 1 0.7677 0.4241 5.8339 44 1 2.0039 0.4472 4.5535 45 1 2.6437 2.7503 5.2128 46 1 1.4076 2.7273 6.4932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049875357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:58 Heat of formation + Delta-G solvation = 63.982752 kcal Electronic energy + Delta-G solvation = -29672.932705 eV Core-core repulsion = 25756.513523 eV Total energy + Delta-G solvation = -3916.419182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.17576 -39.46313 -37.43495 -36.99819 -35.47459 -34.14080 -33.38146 -32.96156 -31.03895 -30.56616 -28.73988 -28.49846 -26.63466 -24.38474 -24.23118 -23.10394 -22.07739 -21.62439 -20.11367 -18.78961 -17.88247 -17.35442 -17.32985 -16.78006 -16.54912 -15.65816 -15.46476 -14.97795 -14.92721 -14.83481 -14.36695 -14.12657 -14.01881 -13.84294 -13.72214 -13.56840 -13.21350 -12.72082 -12.60736 -12.53742 -12.50075 -12.14545 -11.96850 -11.86040 -11.50899 -11.46081 -11.38411 -11.35268 -11.14274 -11.03977 -10.93825 -10.72466 -10.51504 -10.30281 -9.86242 -9.83893 -9.31155 -8.56999 -8.18976 -8.07236 -7.98406 -6.19054 -4.24675 1.03110 1.59261 2.46959 2.58612 2.67757 2.86940 2.94271 3.23092 3.29035 3.30529 3.45341 3.94537 4.00643 4.16781 4.32189 4.44874 4.55235 4.63157 4.77036 4.90775 4.94842 4.99685 5.02900 5.10339 5.16748 5.23852 5.32057 5.38131 5.49398 5.58113 5.62843 5.64364 5.76643 5.86978 5.94464 6.08581 6.17700 6.50605 6.51727 6.55467 6.60446 6.70498 6.94955 7.15243 7.16413 7.26014 7.43768 7.75264 7.98016 8.00805 8.04084 8.58303 8.79777 9.41418 10.89117 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008876 B = 0.004052 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.958418 B = 6908.108577 C = 8451.258476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.046 4.046 3 C 0.304 3.696 4 N -0.498 5.498 5 C 0.050 3.950 6 C -0.068 4.068 7 C -0.132 4.132 8 C -0.109 4.109 9 C -0.104 4.104 10 C 0.058 3.942 11 N -0.469 5.469 12 C 0.083 3.917 13 C 0.489 3.511 14 O -0.507 6.507 15 N -0.591 5.591 16 C 0.247 3.753 17 C -0.532 4.532 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.896 3.104 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.113 3.887 26 C -0.051 4.051 27 C 0.214 3.786 28 N -0.440 5.440 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.037 0.963 41 H 0.047 0.953 42 H 0.265 0.735 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.104 0.896 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.835 1.561 -5.859 16.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.085 4.085 3 C 0.039 3.961 4 N -0.217 5.217 5 C -0.068 4.068 6 C -0.088 4.088 7 C -0.152 4.152 8 C -0.128 4.128 9 C -0.125 4.125 10 C -0.051 4.051 11 N -0.157 5.157 12 C -0.043 4.043 13 C 0.273 3.727 14 O -0.381 6.381 15 N -0.324 5.324 16 C 0.128 3.872 17 C -0.571 4.571 18 H 0.076 0.924 19 C -0.138 4.138 20 N -0.530 5.530 21 Si 0.724 3.276 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.013 4.013 26 C -0.092 4.092 27 C -0.104 4.104 28 N -0.117 5.117 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.092 0.908 45 H 0.122 0.878 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 15.199 0.891 -5.850 16.310 hybrid contribution -1.001 -0.270 0.667 1.232 sum 14.199 0.621 -5.183 15.128 Atomic orbital electron populations 1.21786 0.92454 1.02569 1.04186 1.20195 0.97692 0.86623 1.03991 1.23581 0.96218 0.95902 0.80433 1.70398 1.20848 1.03430 1.27037 1.19018 1.03843 0.93638 0.90293 1.19957 0.98834 0.90454 0.99531 1.20573 1.02446 0.97832 0.94353 1.20805 1.00642 0.97414 0.93975 1.19924 1.02447 0.90838 0.99301 1.18795 1.03634 0.87456 0.95220 1.44720 1.53848 1.11079 1.06102 1.21852 0.98244 1.03012 0.81222 1.20410 0.88553 0.80772 0.83006 1.90788 1.52961 1.40964 1.53374 1.48242 1.15174 1.58296 1.10663 1.19398 0.74845 0.97684 0.95251 1.21312 0.93822 1.01871 1.40094 0.92360 1.24902 0.97921 0.96112 0.94835 1.69899 1.15123 1.27433 1.40545 0.86588 0.79767 0.82359 0.78932 1.20178 1.21146 1.20082 1.21388 0.92260 0.93520 0.94165 1.19883 0.94655 0.98794 0.95901 1.29028 0.93742 0.93728 0.93884 1.81231 1.10945 1.09184 1.10346 0.91546 0.90833 0.91948 0.88424 0.90176 0.85687 0.85682 0.85537 0.86348 0.86429 0.86956 0.94497 0.93540 0.92492 0.88128 0.90787 0.87829 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.89 37.16 0.37 -1.78 16 2 C -0.05 -0.56 6.23 -27.88 -0.17 -0.73 16 3 C 0.30 4.64 7.11 -154.83 -1.10 3.54 16 4 N -0.50 -8.45 11.27 -8.24 -0.09 -8.55 16 5 C 0.05 0.82 7.23 -84.70 -0.61 0.20 16 6 C -0.07 -0.92 10.05 -39.61 -0.40 -1.32 16 7 C -0.13 -1.48 9.96 -39.97 -0.40 -1.88 16 8 C -0.11 -1.22 10.03 -39.52 -0.40 -1.62 16 9 C -0.10 -1.35 10.05 -39.50 -0.40 -1.75 16 10 C 0.06 0.88 6.88 -83.98 -0.58 0.31 16 11 N -0.47 -6.88 2.29 -112.43 -0.26 -7.14 16 12 C 0.08 0.99 4.96 -5.19 -0.03 0.97 16 13 C 0.49 8.11 7.50 -10.99 -0.08 8.03 16 14 O -0.51 -11.15 15.09 5.55 0.08 -11.07 16 15 N -0.59 -9.54 2.46 -175.06 -0.43 -9.97 16 16 C 0.25 5.42 5.16 -5.19 -0.03 5.39 16 17 C -0.53 -13.31 9.39 -34.44 -0.32 -13.64 16 18 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 19 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -24.59 13.29 55.43 0.74 -23.86 16 21 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 C 0.11 1.25 5.17 -4.04 -0.02 1.23 16 26 C -0.05 -0.44 6.03 -29.52 -0.18 -0.62 16 27 C 0.21 2.26 15.43 -20.76 -0.32 1.94 16 28 N -0.44 -5.89 18.54 42.15 0.78 -5.11 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.30 6.94 -51.93 -0.36 0.94 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.08 0.78 7.01 -51.93 -0.36 0.41 16 34 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.12 1.07 6.25 -51.93 -0.32 0.75 16 39 H 0.11 0.98 7.19 -51.93 -0.37 0.60 16 40 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 41 H 0.05 1.20 7.42 -51.93 -0.39 0.82 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.10 1.21 8.07 -51.93 -0.42 0.80 16 44 H 0.07 0.61 6.44 -51.93 -0.33 0.28 16 45 H 0.10 0.67 7.22 -51.93 -0.38 0.30 16 46 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 395.86 15.07 5.97 5.97 Total: -1.00 -34.67 395.86 -9.28 -43.95 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.28 Total: 0.48 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -4.76 Total: -0.10 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.74 Total: -54.62 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.67 -9.28 -43.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049875357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.931 kcal (2) G-P(sol) polarization free energy of solvation -34.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds