Wall clock time and date at job start Sat Apr 11 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46785 * 2 1 4 4 N 1.30106 * 124.94917 * 269.97165 * 3 2 1 5 5 C 1.35787 * 109.64359 * 180.02562 * 4 3 2 6 6 C 1.39734 * 133.60143 * 179.97438 * 5 4 3 7 7 C 1.36605 * 119.88806 * 180.02562 * 6 5 4 8 8 C 1.38776 * 120.66622 * 359.97438 * 7 6 5 9 9 C 1.37851 * 120.45485 * 0.03810 * 8 7 6 10 10 C 1.38832 * 119.68776 * 359.97438 * 9 8 7 11 11 N 1.36036 * 124.94888 * 90.00017 * 3 2 1 12 12 C 1.46505 * 126.35096 * 359.94039 * 11 3 2 13 13 C 1.50696 * 109.47091 * 270.01925 * 12 11 3 14 14 O 1.21288 * 119.99829 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00186 * 179.97438 * 13 12 11 16 16 C 1.46501 * 120.00223 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.46684 * 90.00452 * 16 15 13 18 18 H 1.08001 * 120.00084 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99776 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00187 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00011 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46753 * 59.99694 * 21 19 17 23 23 H 1.48498 * 109.47323 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47291 * 299.99969 * 21 19 17 25 25 C 1.46500 * 119.99644 * 0.02562 * 15 13 12 26 26 C 1.52994 * 109.47559 * 89.99656 * 25 15 13 27 27 C 1.47198 * 109.47201 * 179.97438 * 26 25 15 28 28 N 7.90568 * 106.57257 * 82.84732 * 2 1 3 29 29 H 1.09006 * 109.47054 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47136 * 300.00097 * 1 2 3 31 31 H 1.09003 * 109.46709 * 60.00294 * 1 2 3 32 32 H 1.08993 * 109.47136 * 239.99903 * 2 1 3 33 33 H 1.09003 * 109.46709 * 119.99706 * 2 1 3 34 34 H 1.08009 * 120.05649 * 0.29744 * 6 5 4 35 35 H 1.08001 * 119.66343 * 179.97438 * 7 6 5 36 36 H 1.08002 * 119.77372 * 180.02562 * 8 7 6 37 37 H 1.08000 * 120.15788 * 179.97438 * 9 8 7 38 38 H 1.09001 * 109.46639 * 30.01863 * 12 11 3 39 39 H 1.08995 * 109.47160 * 150.01574 * 12 11 3 40 40 H 1.08998 * 109.47031 * 210.00408 * 16 15 13 41 41 H 1.08997 * 109.47123 * 330.00854 * 16 15 13 42 42 H 0.96998 * 120.00009 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.46651 * 210.00024 * 25 15 13 44 44 H 1.09003 * 109.46993 * 329.99221 * 25 15 13 45 45 H 1.08996 * 109.46961 * 299.99743 * 26 25 15 46 46 H 1.09003 * 109.47324 * 59.99767 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2812 2.1234 -1.0664 5 6 2.7181 3.3581 -0.7080 6 6 3.1179 4.4859 -1.4296 7 6 3.5166 5.6119 -0.7670 8 6 3.5291 5.6498 0.6202 9 6 3.1391 4.5491 1.3528 10 6 2.7310 3.3958 0.6965 11 7 2.2920 2.1556 1.1150 12 6 2.1343 1.7131 2.5027 13 6 0.7410 2.0356 2.9775 14 8 -0.0430 2.5818 2.2305 15 7 0.3660 1.7172 4.2323 16 6 -0.9884 2.0313 4.6941 17 6 -1.9023 0.8706 4.3963 18 1 -1.5133 -0.0124 3.9111 19 6 -3.2354 0.9365 4.7422 20 7 -3.7095 2.0123 5.3315 21 14 -4.3685 -0.5019 4.3724 22 1 -3.8750 -1.7139 5.0744 23 1 -5.7413 -0.1837 4.8405 24 1 -4.3896 -0.7519 2.9087 25 6 1.3132 1.0580 5.1348 26 6 2.0983 2.1165 5.9119 27 6 3.0496 1.4541 6.8191 28 7 3.7850 0.9435 7.5183 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.1075 4.4689 -2.5095 35 1 3.8253 6.4814 -1.3283 36 1 3.8466 6.5478 1.1294 37 1 3.1511 4.5838 2.4322 38 1 2.2984 0.6371 2.5618 39 1 2.8608 2.2265 3.1326 40 1 -0.9726 2.2149 5.7684 41 1 -1.3509 2.9207 4.1787 42 1 -4.6472 2.0585 5.5752 43 1 0.7677 0.4241 5.8339 44 1 2.0039 0.4472 4.5535 45 1 2.6437 2.7503 5.2128 46 1 1.4076 2.7273 6.4932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049875357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:57 Heat of formation + Delta-G solvation = 44.021499 kcal Electronic energy + Delta-G solvation = -29673.798290 eV Core-core repulsion = 25756.513523 eV Total energy + Delta-G solvation = -3917.284767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.20169 -40.75090 -38.38256 -37.98902 -36.74435 -35.28953 -34.74364 -34.38666 -32.19827 -31.55019 -29.94873 -29.66622 -28.06335 -25.42394 -25.34492 -24.70141 -23.08397 -22.62814 -21.25746 -19.96631 -18.91402 -18.42460 -18.35730 -18.29305 -17.86791 -16.95377 -16.50092 -16.27956 -16.11114 -15.88344 -15.67309 -15.21019 -14.96858 -14.87759 -14.75762 -14.60656 -14.36227 -14.30086 -13.64379 -13.55589 -13.55098 -13.41421 -13.19376 -12.95129 -12.79939 -12.74231 -12.56227 -12.52995 -12.38980 -12.31657 -12.17450 -12.02356 -11.88193 -11.68879 -11.62062 -10.91512 -10.64129 -10.57859 -9.54333 -9.19234 -9.00100 -8.18129 -6.29521 0.04668 0.61226 1.40344 1.43215 1.45876 1.49639 1.61816 1.80894 1.84190 1.85863 2.26934 2.44408 2.96777 3.07770 3.15582 3.19626 3.46711 3.61965 3.69049 3.91237 4.05908 4.09665 4.13291 4.18402 4.19670 4.29759 4.45529 4.51618 4.55711 4.62742 4.72634 4.82417 4.84648 4.91020 5.02689 5.03936 5.08176 5.24399 5.32618 5.33093 5.54011 5.58098 5.62841 5.64297 5.84027 6.04037 6.11728 6.14949 6.60844 6.66138 6.80499 6.93768 7.29396 7.44388 8.88615 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008876 B = 0.004052 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.958418 B = 6908.108577 C = 8451.258476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.042 4.042 3 C 0.290 3.710 4 N -0.532 5.532 5 C 0.011 3.989 6 C -0.089 4.089 7 C -0.125 4.125 8 C -0.104 4.104 9 C -0.118 4.118 10 C 0.036 3.964 11 N -0.472 5.472 12 C 0.089 3.911 13 C 0.488 3.512 14 O -0.570 6.570 15 N -0.589 5.589 16 C 0.263 3.737 17 C -0.535 4.535 18 H 0.059 0.941 19 C 0.013 3.987 20 N -0.927 5.927 21 Si 0.952 3.048 22 H -0.260 1.260 23 H -0.287 1.287 24 H -0.280 1.280 25 C 0.107 3.893 26 C -0.040 4.040 27 C 0.245 3.755 28 N -0.488 5.488 29 H 0.088 0.912 30 H 0.034 0.966 31 H 0.041 0.959 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.131 0.869 35 H 0.158 0.842 36 H 0.161 0.839 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.037 0.963 41 H -0.001 1.001 42 H 0.264 0.736 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.137 0.863 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.194 1.052 -5.409 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 C 0.024 3.976 4 N -0.252 5.252 5 C -0.107 4.107 6 C -0.109 4.109 7 C -0.145 4.145 8 C -0.123 4.123 9 C -0.139 4.139 10 C -0.072 4.072 11 N -0.161 5.161 12 C -0.037 4.037 13 C 0.275 3.725 14 O -0.449 6.449 15 N -0.320 5.320 16 C 0.142 3.858 17 C -0.574 4.574 18 H 0.077 0.923 19 C -0.187 4.187 20 N -0.567 5.567 21 Si 0.778 3.222 22 H -0.185 1.185 23 H -0.213 1.213 24 H -0.205 1.205 25 C -0.017 4.017 26 C -0.081 4.081 27 C -0.072 4.072 28 N -0.166 5.166 29 H 0.107 0.893 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.149 0.851 35 H 0.176 0.824 36 H 0.179 0.821 37 H 0.158 0.842 38 H 0.171 0.829 39 H 0.172 0.828 40 H 0.055 0.945 41 H 0.018 0.982 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.131 0.869 45 H 0.155 0.845 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 17.613 0.355 -5.370 18.417 hybrid contribution -1.733 -0.004 0.477 1.797 sum 15.880 0.351 -4.893 16.620 Atomic orbital electron populations 1.21680 0.94322 1.02991 1.01236 1.20322 0.95758 0.85598 1.06390 1.24093 0.96048 0.96895 0.80556 1.70327 1.22033 1.04379 1.28467 1.19523 1.05300 0.94223 0.91608 1.20269 0.99683 0.90768 1.00173 1.21003 1.00673 0.97919 0.94883 1.21300 0.98933 0.98032 0.94075 1.20333 1.02410 0.90480 1.00642 1.19192 1.04332 0.88446 0.95242 1.44844 1.53597 1.10904 1.06745 1.22086 0.95320 1.05685 0.80572 1.21214 0.89993 0.79187 0.82109 1.90770 1.55307 1.43765 1.55040 1.48038 1.13895 1.58435 1.11585 1.18797 0.77733 0.94853 0.94434 1.21703 0.94425 1.02513 1.38768 0.92287 1.25680 0.99633 0.98292 0.95048 1.70014 1.15250 1.29247 1.42184 0.85698 0.77955 0.80201 0.78383 1.18452 1.21273 1.20532 1.21661 0.91946 0.94140 0.93991 1.19849 0.94282 0.98057 0.95912 1.29100 0.92751 0.92445 0.92906 1.81281 1.12801 1.10648 1.11891 0.89328 0.94648 0.93928 0.86684 0.87065 0.85074 0.82432 0.82106 0.84213 0.82860 0.82816 0.94518 0.98246 0.92727 0.89143 0.86883 0.84535 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 9.89 71.98 0.71 -3.37 16 2 C -0.04 -0.96 6.23 29.85 0.19 -0.77 16 3 C 0.29 8.70 7.11 137.92 0.98 9.68 16 4 N -0.53 -18.41 11.27 -179.97 -2.03 -20.44 16 5 C 0.01 0.36 7.23 39.45 0.29 0.64 16 6 C -0.09 -2.38 10.05 22.25 0.22 -2.16 16 7 C -0.12 -2.55 9.96 22.02 0.22 -2.33 16 8 C -0.10 -2.04 10.03 22.31 0.22 -1.81 16 9 C -0.12 -2.79 10.05 22.32 0.22 -2.56 16 10 C 0.04 1.08 6.88 38.86 0.27 1.35 16 11 N -0.47 -13.19 2.29 -509.63 -1.17 -14.36 16 12 C 0.09 1.83 4.96 85.63 0.43 2.26 16 13 C 0.49 15.69 7.50 87.66 0.66 16.35 16 14 O -0.57 -25.84 15.09 -3.06 -0.05 -25.89 16 15 N -0.59 -18.26 2.46 -826.16 -2.03 -20.29 16 16 C 0.26 11.77 5.16 85.63 0.44 12.21 16 17 C -0.54 -27.09 9.39 25.60 0.24 -26.85 16 18 H 0.06 2.91 7.81 -2.91 -0.02 2.88 16 19 C 0.01 0.68 5.46 84.65 0.46 1.14 16 20 N -0.93 -52.45 13.29 21.45 0.28 -52.16 16 21 Si 0.95 42.14 29.54 68.60 2.03 44.17 16 22 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 23 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 C 0.11 2.03 5.17 86.38 0.45 2.48 16 26 C -0.04 -0.55 6.03 28.79 0.17 -0.37 16 27 C 0.25 4.41 15.43 89.44 1.38 5.79 16 28 N -0.49 -12.02 18.54 20.00 0.37 -11.65 16 29 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.03 1.27 6.94 -2.39 -0.02 1.25 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.11 1.78 7.01 -2.39 -0.02 1.77 16 34 H 0.13 3.12 8.06 -2.91 -0.02 3.09 16 35 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 36 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.15 2.06 6.25 -2.39 -0.01 2.05 16 39 H 0.15 1.88 7.19 -2.39 -0.02 1.86 16 40 H 0.04 1.63 8.07 -2.39 -0.02 1.61 16 41 H 0.00 -0.03 7.42 -2.39 -0.02 -0.05 16 42 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 43 H 0.09 1.97 8.07 -2.39 -0.02 1.95 16 44 H 0.11 1.31 6.44 -2.39 -0.02 1.30 16 45 H 0.14 1.07 7.22 -2.39 -0.02 1.05 16 46 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -82.53 395.86 5.96 -76.57 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 1.00 Total: 12.38 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 7.55 Total: 11.67 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -4.57 Total: -118.90 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.05 Total: -25.89 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -82.53 5.96 -76.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049875357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.595 kcal (2) G-P(sol) polarization free energy of solvation -82.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds