Wall clock time and date at job start Sat Apr 11 2020 06:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30865 * 126.20258 * 2 1 4 4 C 1.34577 * 107.28542 * 179.97438 * 3 2 1 5 5 C 1.47835 * 126.02043 * 180.02562 * 4 3 2 6 6 O 1.21562 * 119.99841 * 173.90613 * 5 4 3 7 7 N 1.34774 * 120.00291 * 353.90245 * 5 4 3 8 8 C 1.46500 * 119.99745 * 4.27046 * 7 5 4 9 9 C 1.50701 * 109.47481 * 83.47603 * 8 7 5 10 10 H 1.07997 * 119.99716 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00140 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99708 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99956 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47331 * 0.02562 * 13 11 9 15 15 H 1.48509 * 109.46899 * 120.00126 * 13 11 9 16 16 H 1.48499 * 109.47317 * 239.99860 * 13 11 9 17 17 C 1.46500 * 119.99918 * 184.26526 * 7 5 4 18 18 C 1.52999 * 109.47055 * 94.92460 * 17 7 5 19 19 C 1.53003 * 117.49429 * 243.74436 * 18 17 7 20 20 C 1.53003 * 117.49808 * 175.08816 * 18 17 7 21 21 N 1.31561 * 107.95141 * 359.74342 * 4 3 2 22 22 N 1.28847 * 108.70897 * 0.42598 * 21 4 3 23 23 C 1.40146 * 125.77184 * 179.83588 * 22 21 4 24 24 C 1.38853 * 120.06598 * 324.69609 * 23 22 21 25 25 C 1.38120 * 119.92978 * 179.97438 * 24 23 22 26 26 C 1.38278 * 120.06740 * 359.97438 * 25 24 23 27 27 C 1.38281 * 120.13872 * 0.02562 * 26 25 24 28 28 C 1.38114 * 120.06959 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47328 * 270.00249 * 1 2 3 30 30 H 1.09000 * 109.47010 * 29.99951 * 1 2 3 31 31 H 1.09001 * 109.47342 * 149.99781 * 1 2 3 32 32 H 1.09004 * 109.46980 * 203.47509 * 8 7 5 33 33 H 1.08996 * 109.47401 * 323.47333 * 8 7 5 34 34 H 0.97003 * 119.99550 * 179.97438 * 12 11 9 35 35 H 1.09009 * 109.46710 * 214.91999 * 17 7 5 36 36 H 1.08990 * 109.47306 * 334.91660 * 17 7 5 37 37 H 1.08996 * 115.55262 * 29.41335 * 18 17 7 38 38 H 1.08999 * 117.49852 * 0.02562 * 19 18 17 39 39 H 1.09000 * 117.50004 * 145.01775 * 19 18 17 40 40 H 1.08993 * 117.49367 * 214.97681 * 20 18 17 41 41 H 1.09001 * 117.49861 * 359.97438 * 20 18 17 42 42 H 1.07993 * 120.03334 * 359.97438 * 24 23 22 43 43 H 1.08002 * 119.96451 * 180.02562 * 25 24 23 44 44 H 1.07997 * 119.93260 * 179.72224 * 26 25 24 45 45 H 1.08000 * 119.96678 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.04287 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2800 1.0560 0.0000 4 6 3.5531 0.6197 0.0006 5 6 4.7631 1.4690 0.0013 6 8 5.8619 0.9612 0.1136 7 7 4.6481 2.8061 -0.1225 8 6 3.3216 3.4264 -0.1637 9 6 2.8161 3.6254 1.2420 10 1 3.4225 3.3206 2.0820 11 6 1.5799 4.1975 1.4556 12 7 0.8417 4.5690 0.4325 13 14 0.9531 4.4434 3.1979 14 1 1.9654 3.9448 4.1632 15 1 0.7112 5.8889 3.4375 16 1 -0.3154 3.6927 3.3783 17 6 5.8496 3.6391 -0.2158 18 6 6.1789 3.8962 -1.6876 19 6 7.4999 3.3404 -2.2234 20 6 7.3382 4.8456 -1.9967 21 7 3.5309 -0.6957 0.0065 22 7 2.3037 -1.0884 0.0006 23 6 1.8700 -2.4211 0.0007 24 6 2.5911 -3.3874 -0.6880 25 6 2.1614 -4.7000 -0.6855 26 6 1.0147 -5.0523 0.0023 27 6 0.2944 -4.0923 0.6891 28 6 0.7190 -2.7780 0.6905 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 3.3873 4.3915 -0.6662 33 1 2.6345 2.7791 -0.7086 34 1 -0.0282 4.9712 0.5828 35 1 5.6729 4.5893 0.2884 36 1 6.6855 3.1257 0.2593 37 1 5.3255 3.9066 -2.3655 38 1 8.1341 2.7913 -1.5274 39 1 7.5156 2.9855 -3.2539 40 1 7.2475 5.4803 -2.8781 41 1 7.8660 5.2874 -1.1515 42 1 3.4869 -3.1129 -1.2250 43 1 2.7220 -5.4522 -1.2207 44 1 0.6782 -6.0786 -0.0009 45 1 -0.6010 -4.3705 1.2251 46 1 0.1563 -2.0286 1.2274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068391420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:02 Heat of formation + Delta-G solvation = 132.079927 kcal Electronic energy + Delta-G solvation = -29560.306799 eV Core-core repulsion = 25646.840532 eV Total energy + Delta-G solvation = -3913.466267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.18415 -39.45494 -38.86042 -36.85005 -34.80439 -34.11394 -32.94968 -32.27607 -31.15353 -29.89678 -27.89637 -27.68916 -26.48402 -24.04807 -23.23803 -22.83213 -22.08977 -21.86984 -20.79730 -20.13725 -18.68304 -18.00771 -16.72171 -16.52939 -16.28526 -16.02908 -15.77029 -14.89927 -14.71129 -14.55470 -14.39976 -14.25621 -13.80622 -13.66500 -13.52115 -13.14814 -12.92844 -12.78874 -12.46355 -12.25473 -12.06398 -11.86531 -11.72216 -11.42638 -11.25403 -11.22473 -11.00957 -10.80975 -10.69478 -10.37083 -10.22483 -10.01994 -9.60105 -9.57855 -9.38022 -9.30291 -9.25415 -9.16717 -8.52801 -8.27311 -7.63044 -5.94614 -3.94638 0.69234 1.04107 2.01891 2.44880 2.71076 3.30080 3.38282 3.43471 3.44615 3.70315 4.07013 4.17190 4.45106 4.49055 4.53851 4.61144 4.79640 4.90461 5.03008 5.05746 5.13120 5.23329 5.28408 5.39633 5.41507 5.43050 5.60866 5.63264 5.71314 5.82258 5.88256 6.01406 6.05366 6.06255 6.13960 6.17210 6.18316 6.26926 6.39371 6.44598 6.55666 6.63064 6.86167 6.91469 7.06828 7.58706 7.81411 7.97517 8.30012 8.34543 8.54647 8.96676 9.08723 9.66606 11.13901 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009109 B = 0.004260 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.167234 B = 6570.543388 C = 9055.633388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.201 3.799 3 N -0.400 5.400 4 C 0.168 3.832 5 C 0.613 3.387 6 O -0.553 6.553 7 N -0.572 5.572 8 C 0.225 3.775 9 C -0.505 4.505 10 H 0.051 0.949 11 C 0.072 3.928 12 N -0.889 5.889 13 Si 0.884 3.116 14 H -0.277 1.277 15 H -0.285 1.285 16 H -0.285 1.285 17 C 0.149 3.851 18 C -0.161 4.161 19 C -0.178 4.178 20 C -0.178 4.178 21 N -0.271 5.271 22 N -0.267 5.267 23 C 0.140 3.860 24 C -0.101 4.101 25 C -0.104 4.104 26 C -0.118 4.118 27 C -0.102 4.102 28 C -0.120 4.120 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.030 0.970 33 H 0.079 0.921 34 H 0.258 0.742 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.129 0.871 45 H 0.134 0.866 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.524 -13.853 -4.257 14.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 N -0.123 5.123 4 C -0.112 4.112 5 C 0.397 3.603 6 O -0.431 6.431 7 N -0.302 5.302 8 C 0.106 3.894 9 C -0.544 4.544 10 H 0.069 0.931 11 C -0.130 4.130 12 N -0.529 5.529 13 Si 0.712 3.288 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.212 1.212 17 C 0.026 3.974 18 C -0.180 4.180 19 C -0.215 4.215 20 C -0.216 4.216 21 N -0.107 5.107 22 N -0.058 5.058 23 C 0.049 3.951 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.137 4.137 27 C -0.121 4.121 28 C -0.140 4.140 29 H 0.105 0.895 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.154 0.846 43 H 0.151 0.849 44 H 0.147 0.853 45 H 0.152 0.848 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.605 -13.942 -4.233 14.583 hybrid contribution -0.774 0.185 1.087 1.347 sum -1.379 -13.757 -3.146 14.180 Atomic orbital electron populations 1.20399 0.83823 1.04678 1.04026 1.25418 0.97806 0.81654 1.02384 1.72218 0.99622 1.24281 1.16211 1.23822 0.93681 0.87842 1.05864 1.16266 0.84557 0.82030 0.77480 1.90707 1.26068 1.74032 1.52275 1.48018 1.09822 1.04235 1.68131 1.20000 0.76723 0.94238 0.98446 1.21282 1.02032 1.39228 0.91850 0.93094 1.24710 0.96366 0.95676 0.96199 1.69942 1.11495 1.42183 1.29294 0.86677 0.78751 0.77634 0.85715 1.20134 1.21160 1.21155 1.20938 0.88060 0.95352 0.93046 1.22789 0.92634 1.03967 0.98615 1.22996 1.00740 0.95898 1.01838 1.22906 1.02829 0.92773 1.03058 1.74354 1.00645 1.14502 1.21149 1.44620 1.03930 1.05883 1.51322 1.17606 0.96504 0.80620 1.00408 1.21123 1.00138 0.92452 0.98390 1.21089 0.96674 0.95311 0.99196 1.21293 0.95257 0.99830 0.97280 1.21020 1.00117 0.91721 0.99192 1.21188 0.96089 0.97788 0.98984 0.89502 0.87833 0.90529 0.95170 0.90409 0.93227 0.89713 0.90329 0.87638 0.88691 0.89479 0.89111 0.88859 0.84588 0.84950 0.85317 0.84780 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 8.66 36.01 0.31 -0.66 16 2 C 0.20 3.75 7.79 -155.25 -1.21 2.54 16 3 N -0.40 -9.09 7.17 -8.47 -0.06 -9.15 16 4 C 0.17 3.90 7.63 -156.30 -1.19 2.71 16 5 C 0.61 14.70 7.62 -12.34 -0.09 14.60 16 6 O -0.55 -13.82 16.57 5.31 0.09 -13.73 16 7 N -0.57 -13.06 2.48 -176.18 -0.44 -13.50 16 8 C 0.22 5.64 4.79 -5.19 -0.02 5.61 16 9 C -0.50 -13.69 8.41 -34.44 -0.29 -13.98 16 10 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 11 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 12 N -0.89 -24.62 13.29 55.43 0.74 -23.88 16 13 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 C 0.15 2.89 5.74 -4.04 -0.02 2.87 16 18 C -0.16 -2.71 6.01 -90.62 -0.54 -3.25 16 19 C -0.18 -2.63 10.18 -26.69 -0.27 -2.91 16 20 C -0.18 -2.42 10.25 -26.69 -0.27 -2.70 16 21 N -0.27 -5.79 11.77 32.08 0.38 -5.41 16 22 N -0.27 -4.82 3.47 -7.99 -0.03 -4.85 16 23 C 0.14 1.97 6.23 -83.60 -0.52 1.45 16 24 C -0.10 -1.26 9.71 -39.40 -0.38 -1.64 16 25 C -0.10 -0.95 10.04 -39.61 -0.40 -1.35 16 26 C -0.12 -0.93 10.04 -39.55 -0.40 -1.32 16 27 C -0.10 -0.85 10.04 -39.61 -0.40 -1.25 16 28 C -0.12 -1.33 8.25 -39.40 -0.33 -1.65 16 29 H 0.09 1.07 7.72 -51.93 -0.40 0.67 16 30 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 31 H 0.08 0.81 6.86 -51.93 -0.36 0.45 16 32 H 0.03 0.79 8.02 -51.93 -0.42 0.37 16 33 H 0.08 2.06 5.29 -51.93 -0.27 1.78 16 34 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.08 1.60 8.11 -51.92 -0.42 1.18 16 36 H 0.08 1.52 6.96 -51.93 -0.36 1.16 16 37 H 0.11 1.88 8.14 -51.93 -0.42 1.46 16 38 H 0.09 1.44 8.03 -51.93 -0.42 1.02 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.14 1.79 8.03 -52.49 -0.42 1.37 16 43 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 44 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 46 H 0.14 1.40 6.05 -52.49 -0.32 1.08 16 LS Contribution 388.54 15.07 5.86 5.86 Total: -1.00 -33.31 388.54 -10.93 -44.24 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.31 Total: 3.29 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -6.13 Total: 0.93 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.59 Total: -56.80 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.31 -10.93 -44.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068391420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.320 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds