Wall clock time and date at job start Sat Apr 11 2020 06:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30865 * 126.20258 * 2 1 4 4 C 1.34577 * 107.28542 * 179.97438 * 3 2 1 5 5 C 1.47835 * 126.02043 * 180.02562 * 4 3 2 6 6 O 1.21562 * 119.99841 * 173.90613 * 5 4 3 7 7 N 1.34774 * 120.00291 * 353.90245 * 5 4 3 8 8 C 1.46500 * 119.99745 * 4.27046 * 7 5 4 9 9 C 1.50701 * 109.47481 * 83.47603 * 8 7 5 10 10 H 1.07997 * 119.99716 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00140 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99708 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99956 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47331 * 0.02562 * 13 11 9 15 15 H 1.48509 * 109.46899 * 120.00126 * 13 11 9 16 16 H 1.48499 * 109.47317 * 239.99860 * 13 11 9 17 17 C 1.46500 * 119.99918 * 184.26526 * 7 5 4 18 18 C 1.52999 * 109.47055 * 94.92460 * 17 7 5 19 19 C 1.53003 * 117.49429 * 243.74436 * 18 17 7 20 20 C 1.53003 * 117.49808 * 175.08816 * 18 17 7 21 21 N 1.31561 * 107.95141 * 359.74342 * 4 3 2 22 22 N 1.28847 * 108.70897 * 0.42598 * 21 4 3 23 23 C 1.40146 * 125.77184 * 179.83588 * 22 21 4 24 24 C 1.38853 * 120.06598 * 324.69609 * 23 22 21 25 25 C 1.38120 * 119.92978 * 179.97438 * 24 23 22 26 26 C 1.38278 * 120.06740 * 359.97438 * 25 24 23 27 27 C 1.38281 * 120.13872 * 0.02562 * 26 25 24 28 28 C 1.38114 * 120.06959 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47328 * 270.00249 * 1 2 3 30 30 H 1.09000 * 109.47010 * 29.99951 * 1 2 3 31 31 H 1.09001 * 109.47342 * 149.99781 * 1 2 3 32 32 H 1.09004 * 109.46980 * 203.47509 * 8 7 5 33 33 H 1.08996 * 109.47401 * 323.47333 * 8 7 5 34 34 H 0.97003 * 119.99550 * 179.97438 * 12 11 9 35 35 H 1.09009 * 109.46710 * 214.91999 * 17 7 5 36 36 H 1.08990 * 109.47306 * 334.91660 * 17 7 5 37 37 H 1.08996 * 115.55262 * 29.41335 * 18 17 7 38 38 H 1.08999 * 117.49852 * 0.02562 * 19 18 17 39 39 H 1.09000 * 117.50004 * 145.01775 * 19 18 17 40 40 H 1.08993 * 117.49367 * 214.97681 * 20 18 17 41 41 H 1.09001 * 117.49861 * 359.97438 * 20 18 17 42 42 H 1.07993 * 120.03334 * 359.97438 * 24 23 22 43 43 H 1.08002 * 119.96451 * 180.02562 * 25 24 23 44 44 H 1.07997 * 119.93260 * 179.72224 * 26 25 24 45 45 H 1.08000 * 119.96678 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.04287 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2800 1.0560 0.0000 4 6 3.5531 0.6197 0.0006 5 6 4.7631 1.4690 0.0013 6 8 5.8619 0.9612 0.1136 7 7 4.6481 2.8061 -0.1225 8 6 3.3216 3.4264 -0.1637 9 6 2.8161 3.6254 1.2420 10 1 3.4225 3.3206 2.0820 11 6 1.5799 4.1975 1.4556 12 7 0.8417 4.5690 0.4325 13 14 0.9531 4.4434 3.1979 14 1 1.9654 3.9448 4.1632 15 1 0.7112 5.8889 3.4375 16 1 -0.3154 3.6927 3.3783 17 6 5.8496 3.6391 -0.2158 18 6 6.1789 3.8962 -1.6876 19 6 7.4999 3.3404 -2.2234 20 6 7.3382 4.8456 -1.9967 21 7 3.5309 -0.6957 0.0065 22 7 2.3037 -1.0884 0.0006 23 6 1.8700 -2.4211 0.0007 24 6 2.5911 -3.3874 -0.6880 25 6 2.1614 -4.7000 -0.6855 26 6 1.0147 -5.0523 0.0023 27 6 0.2944 -4.0923 0.6891 28 6 0.7190 -2.7780 0.6905 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 3.3873 4.3915 -0.6662 33 1 2.6345 2.7791 -0.7086 34 1 -0.0282 4.9712 0.5828 35 1 5.6729 4.5893 0.2884 36 1 6.6855 3.1257 0.2593 37 1 5.3255 3.9066 -2.3655 38 1 8.1341 2.7913 -1.5274 39 1 7.5156 2.9855 -3.2539 40 1 7.2475 5.4803 -2.8781 41 1 7.8660 5.2874 -1.1515 42 1 3.4869 -3.1129 -1.2250 43 1 2.7220 -5.4522 -1.2207 44 1 0.6782 -6.0786 -0.0009 45 1 -0.6010 -4.3705 1.2251 46 1 0.1563 -2.0286 1.2274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068391420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:00 Heat of formation + Delta-G solvation = 115.141612 kcal Electronic energy + Delta-G solvation = -29561.041299 eV Core-core repulsion = 25646.840532 eV Total energy + Delta-G solvation = -3914.200767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -44.66544 -40.83219 -40.10796 -38.26114 -36.57153 -35.42669 -34.33705 -34.28464 -31.98891 -31.00442 -29.57754 -29.15210 -28.18928 -25.55424 -24.69562 -24.19359 -23.23225 -23.05015 -22.08437 -21.48147 -20.36269 -19.24346 -18.52171 -17.99628 -17.73113 -17.52414 -17.19794 -16.36843 -16.16022 -15.98122 -15.73314 -15.38774 -15.04552 -14.92583 -14.68088 -14.54397 -14.23997 -14.13368 -13.92093 -13.72611 -13.50989 -13.40929 -12.98773 -12.84724 -12.59997 -12.58937 -12.49356 -12.34586 -12.14748 -12.08568 -11.73159 -11.65443 -11.37961 -11.25049 -10.92696 -10.85077 -10.67334 -10.33194 -10.06617 -9.65433 -9.45417 -8.03284 -6.10301 -0.33386 0.27755 0.57421 1.14887 1.20552 1.38993 1.41952 1.52083 2.04737 2.30276 2.49440 2.65541 2.89328 3.08224 3.28587 3.40379 3.57415 3.81671 3.83524 3.86938 3.99239 4.12091 4.17832 4.30757 4.36387 4.37193 4.50969 4.55814 4.57755 4.61512 4.75423 4.79415 4.83429 4.95488 4.96500 5.00148 5.04440 5.11708 5.25664 5.27714 5.31241 5.39901 5.44355 5.57838 5.63999 5.86631 5.88800 5.98338 6.26122 6.41321 6.85312 7.01361 7.21837 7.53823 9.04873 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009109 B = 0.004260 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.167234 B = 6570.543388 C = 9055.633388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.198 3.802 3 N -0.441 5.441 4 C 0.133 3.867 5 C 0.606 3.394 6 O -0.575 6.575 7 N -0.573 5.573 8 C 0.245 3.755 9 C -0.514 4.514 10 H 0.029 0.971 11 C 0.038 3.962 12 N -0.910 5.910 13 Si 0.940 3.060 14 H -0.286 1.286 15 H -0.277 1.277 16 H -0.273 1.273 17 C 0.148 3.852 18 C -0.188 4.188 19 C -0.175 4.175 20 C -0.147 4.147 21 N -0.284 5.284 22 N -0.252 5.252 23 C 0.090 3.910 24 C -0.119 4.119 25 C -0.101 4.101 26 C -0.100 4.100 27 C -0.093 4.093 28 C -0.121 4.121 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.015 0.985 33 H 0.066 0.934 34 H 0.263 0.737 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.159 0.841 44 H 0.169 0.831 45 H 0.172 0.828 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.449 -16.051 -3.849 16.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.075 4.075 3 N -0.166 5.166 4 C -0.146 4.146 5 C 0.390 3.610 6 O -0.455 6.455 7 N -0.302 5.302 8 C 0.125 3.875 9 C -0.553 4.553 10 H 0.047 0.953 11 C -0.162 4.162 12 N -0.550 5.550 13 Si 0.767 3.233 14 H -0.212 1.212 15 H -0.203 1.203 16 H -0.198 1.198 17 C 0.025 3.975 18 C -0.207 4.207 19 C -0.212 4.212 20 C -0.185 4.185 21 N -0.122 5.122 22 N -0.043 5.043 23 C 0.001 3.999 24 C -0.139 4.139 25 C -0.120 4.120 26 C -0.118 4.118 27 C -0.111 4.111 28 C -0.141 4.141 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.130 0.870 32 H 0.033 0.967 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.176 0.824 44 H 0.187 0.813 45 H 0.189 0.811 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.540 -16.144 -3.836 16.787 hybrid contribution -0.245 0.617 0.944 1.154 sum -2.785 -15.528 -2.893 16.038 Atomic orbital electron populations 1.20609 0.80427 1.05841 1.05494 1.26126 0.99384 0.81054 1.00938 1.72058 0.99788 1.26712 1.18046 1.23677 0.93851 0.88478 1.08599 1.16506 0.84874 0.82386 0.77193 1.90655 1.26849 1.74382 1.53626 1.48033 1.10130 1.04323 1.67701 1.19605 0.77607 0.93041 0.97287 1.21260 1.02404 1.39786 0.91845 0.95265 1.25265 0.96247 0.95208 0.99465 1.70019 1.11810 1.42298 1.30832 0.85811 0.78224 0.77908 0.81404 1.21170 1.20272 1.19802 1.21080 0.86651 0.94587 0.95148 1.22592 0.93514 1.08084 0.96513 1.23045 0.98674 0.97236 1.02194 1.23039 0.99218 0.92148 1.04061 1.74237 1.02899 1.13833 1.21254 1.44821 1.02683 1.07516 1.49233 1.18136 0.98875 0.79004 1.03929 1.21164 0.99802 0.93940 0.99012 1.21426 0.97367 0.94061 0.99097 1.21818 0.93636 1.01628 0.94696 1.21495 1.00930 0.90251 0.98409 1.21409 0.94820 0.99462 0.98419 0.87689 0.88939 0.86967 0.96696 0.91610 0.92775 0.89751 0.90687 0.89126 0.89192 0.88273 0.86974 0.87462 0.86744 0.82373 0.81307 0.81066 0.83746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.74 8.66 71.24 0.62 -1.13 16 2 C 0.20 7.62 7.79 138.07 1.08 8.69 16 3 N -0.44 -21.18 7.17 -180.71 -1.30 -22.47 16 4 C 0.13 6.59 7.63 137.09 1.05 7.64 16 5 C 0.61 31.10 7.62 86.78 0.66 31.76 16 6 O -0.58 -30.59 16.57 -3.91 -0.06 -30.65 16 7 N -0.57 -27.92 2.48 -829.58 -2.05 -29.97 16 8 C 0.24 12.98 4.79 85.63 0.41 13.39 16 9 C -0.51 -29.02 8.41 25.60 0.22 -28.80 16 10 H 0.03 1.74 7.81 -2.91 -0.02 1.72 16 11 C 0.04 2.09 5.46 84.65 0.46 2.56 16 12 N -0.91 -51.02 13.29 21.45 0.28 -50.73 16 13 Si 0.94 43.85 29.54 68.60 2.03 45.87 16 14 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 17 C 0.15 6.03 5.74 86.38 0.50 6.53 16 18 C -0.19 -6.54 6.01 -10.79 -0.06 -6.60 16 19 C -0.17 -5.17 10.18 30.62 0.31 -4.85 16 20 C -0.15 -3.84 10.25 30.62 0.31 -3.52 16 21 N -0.28 -12.90 11.77 -52.42 -0.62 -13.52 16 22 N -0.25 -9.42 3.47 -179.20 -0.62 -10.04 16 23 C 0.09 2.50 6.23 38.11 0.24 2.74 16 24 C -0.12 -2.94 9.71 22.39 0.22 -2.72 16 25 C -0.10 -1.56 10.04 22.25 0.22 -1.34 16 26 C -0.10 -1.08 10.04 22.29 0.22 -0.85 16 27 C -0.09 -1.12 10.04 22.25 0.22 -0.90 16 28 C -0.12 -2.38 8.25 22.39 0.18 -2.19 16 29 H 0.10 2.43 7.72 -2.39 -0.02 2.41 16 30 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.11 2.14 6.86 -2.39 -0.02 2.12 16 32 H 0.02 0.83 8.02 -2.38 -0.02 0.81 16 33 H 0.07 3.71 5.29 -2.39 -0.01 3.70 16 34 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 35 H 0.08 3.36 8.11 -2.38 -0.02 3.34 16 36 H 0.07 3.07 6.96 -2.39 -0.02 3.06 16 37 H 0.09 3.41 8.14 -2.39 -0.02 3.40 16 38 H 0.09 2.76 8.03 -2.39 -0.02 2.74 16 39 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.11 3.22 8.03 -2.91 -0.02 3.19 16 43 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 44 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 45 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 46 H 0.14 2.57 6.05 -2.91 -0.02 2.55 16 Total: -1.00 -77.46 388.54 5.51 -71.95 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 1.00 Total: 19.15 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: 6.86 Total: 20.41 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -4.30 Total: -126.73 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.06 Total: -30.65 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -77.46 5.51 -71.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068391420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.094 kcal (2) G-P(sol) polarization free energy of solvation -77.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds