Wall clock time and date at job start Sat Apr 11 2020 06:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46022 * 2 1 4 4 C 1.36938 * 119.99733 * 60.02854 * 3 2 1 5 5 H 1.08006 * 120.00405 * 359.97438 * 4 3 2 6 6 C 1.38815 * 119.99758 * 180.02562 * 4 3 2 7 7 N 1.31615 * 120.00207 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99879 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46910 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.46884 * 299.99939 * 8 6 4 11 11 H 1.48501 * 109.47110 * 59.99943 * 8 6 4 12 12 C 1.53043 * 109.44898 * 119.96718 * 2 1 3 13 13 C 1.53190 * 109.31500 * 181.38116 * 12 2 1 14 14 N 1.46924 * 108.76986 * 305.36140 * 13 12 2 15 15 C 1.34780 * 120.63252 * 233.58362 * 14 13 12 16 16 O 1.21542 * 120.00104 * 174.94527 * 15 14 13 17 17 C 1.47906 * 119.99678 * 354.94689 * 15 14 13 18 18 N 1.32380 * 120.63860 * 284.64235 * 17 15 14 19 19 N 1.28090 * 123.17938 * 180.02562 * 18 17 15 20 20 C 1.31793 * 123.50219 * 359.97438 * 19 18 17 21 21 C 1.40404 * 119.13708 * 0.02562 * 20 19 18 22 22 C 1.40237 * 122.74013 * 179.97438 * 21 20 19 23 23 C 1.36260 * 119.36426 * 179.19265 * 22 21 20 24 24 C 1.39379 * 121.07818 * 0.78699 * 23 22 21 25 25 C 1.36363 * 121.08531 * 359.48548 * 24 23 22 26 26 C 1.39840 * 119.41939 * 359.97438 * 25 24 23 27 27 C 1.46933 * 118.73998 * 53.61319 * 14 13 12 28 28 C 1.53037 * 109.46181 * 240.02894 * 2 1 3 29 29 H 1.09006 * 109.47195 * 59.99690 * 1 2 3 30 30 H 1.08995 * 109.47349 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47305 * 300.00335 * 1 2 3 32 32 H 0.96998 * 120.00170 * 240.02123 * 3 2 1 33 33 H 0.96998 * 119.99840 * 0.02562 * 7 6 4 34 34 H 1.09002 * 109.49381 * 301.33589 * 12 2 1 35 35 H 1.09002 * 109.49815 * 61.42060 * 12 2 1 36 36 H 1.08995 * 109.58436 * 185.58047 * 13 12 2 37 37 H 1.08999 * 109.58517 * 65.14937 * 13 12 2 38 38 H 1.08000 * 120.43276 * 179.97438 * 20 19 18 39 39 H 1.08001 * 120.31669 * 359.97438 * 22 21 20 40 40 H 1.08005 * 119.45942 * 180.25257 * 23 22 21 41 41 H 1.07997 * 119.46023 * 179.46664 * 24 23 22 42 42 H 1.07998 * 120.29255 * 179.97438 * 25 24 23 43 43 H 1.08993 * 109.58536 * 186.60033 * 27 14 13 44 44 H 1.08999 * 109.58578 * 66.17580 * 27 14 13 45 45 H 1.09003 * 109.49345 * 298.57904 * 28 2 1 46 46 H 1.08994 * 109.49705 * 58.64309 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6875 2.2242 1.0274 5 1 1.0667 1.8709 1.8374 6 6 2.1496 3.5332 1.0271 7 7 2.9057 3.9641 0.0397 8 14 1.6993 4.6829 2.4289 9 1 2.3134 6.0143 2.1938 10 1 0.2226 4.8236 2.4987 11 1 2.2044 4.1244 3.7088 12 6 2.0396 -0.7208 1.2502 13 6 3.5711 -0.6889 1.2646 14 7 4.0675 -1.2494 0.0004 15 6 4.9616 -2.2579 0.0005 16 8 5.2952 -2.7744 -1.0479 17 6 5.5367 -2.7362 1.2765 18 7 6.4645 -2.0312 1.9046 19 7 6.9956 -2.3991 3.0106 20 6 6.6745 -3.5136 3.6365 21 6 5.7008 -4.3560 3.0764 22 6 5.3021 -5.5588 3.6772 23 6 4.3383 -6.3158 3.0818 24 6 3.7551 -5.9220 1.8786 25 6 4.1232 -4.7615 1.2645 26 6 5.1014 -3.9535 1.8524 27 6 3.5713 -0.6890 -1.2640 28 6 2.0399 -0.7208 -1.2500 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.5754 1.6988 -0.7276 33 1 3.1398 3.3670 -0.6880 34 1 1.6568 -0.2207 2.1398 35 1 1.6972 -1.7556 1.2384 36 1 3.9411 -1.2849 2.0988 37 1 3.9141 0.3405 1.3677 38 1 7.1547 -3.7760 4.5676 39 1 5.7457 -5.8758 4.6095 40 1 4.0272 -7.2404 3.5453 41 1 2.9996 -6.5464 1.4252 42 1 3.6632 -4.4688 0.3322 43 1 3.9416 -1.2850 -2.0980 44 1 3.9145 0.3404 -1.3670 45 1 1.6976 -1.7557 -1.2382 46 1 1.6570 -0.2211 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717298977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:42 Heat of formation + Delta-G solvation = 61.269011 kcal Electronic energy + Delta-G solvation = -30297.635933 eV Core-core repulsion = 26381.099075 eV Total energy + Delta-G solvation = -3916.536859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.77232 -39.93337 -38.32540 -37.96255 -34.74381 -33.77915 -32.59660 -32.15956 -31.04355 -30.62045 -28.82043 -27.91736 -25.96504 -24.65674 -23.95189 -23.44134 -23.01619 -22.40072 -20.38739 -18.91918 -18.63327 -18.20883 -17.42224 -17.01668 -16.58912 -16.06131 -15.33950 -15.17705 -15.04760 -14.71641 -14.52893 -14.23508 -14.17032 -13.72814 -13.67722 -13.56501 -13.05308 -12.92993 -12.64539 -12.63350 -12.32672 -11.97106 -11.64748 -11.52669 -11.45991 -11.31362 -10.94501 -10.83323 -10.80707 -10.57548 -10.34482 -9.99863 -9.97173 -9.90130 -9.81840 -9.72398 -9.10801 -8.97348 -8.82964 -8.43051 -7.05392 -6.09023 -3.10395 -0.20806 0.27375 1.33056 2.34373 2.57625 2.88570 3.51048 3.53740 3.53865 3.71501 3.89060 4.02039 4.05350 4.22160 4.31222 4.63270 4.65425 4.67707 4.79882 5.08387 5.10588 5.18372 5.24936 5.26846 5.35850 5.42541 5.44027 5.51248 5.63788 5.66355 5.83963 5.86207 5.91126 5.92045 5.93587 6.01056 6.11639 6.25073 6.26223 6.30459 6.39154 6.45741 6.56888 6.71632 6.87621 6.95283 7.44120 7.80089 8.02473 8.53970 8.75279 9.20745 10.07401 10.22462 11.38581 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013317 B = 0.003601 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.093911 B = 7773.888751 C = 8326.045416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.203 3.797 3 N -0.728 5.728 4 C -0.326 4.326 5 H 0.064 0.936 6 C -0.042 4.042 7 N -0.942 5.942 8 Si 1.074 2.926 9 H -0.286 1.286 10 H -0.297 1.297 11 H -0.296 1.296 12 C -0.132 4.132 13 C 0.122 3.878 14 N -0.579 5.579 15 C 0.579 3.421 16 O -0.533 6.533 17 C 0.091 3.909 18 N -0.225 5.225 19 N -0.257 5.257 20 C 0.090 3.910 21 C -0.080 4.080 22 C -0.090 4.090 23 C -0.097 4.097 24 C -0.094 4.094 25 C -0.084 4.084 26 C -0.055 4.055 27 C 0.116 3.884 28 C -0.131 4.131 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.367 0.633 33 H 0.255 0.745 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.181 0.819 39 H 0.142 0.858 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.657 -22.586 6.166 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.111 3.889 3 N -0.371 5.371 4 C -0.457 4.457 5 H 0.082 0.918 6 C -0.240 4.240 7 N -0.587 5.587 8 Si 0.906 3.094 9 H -0.211 1.211 10 H -0.224 1.224 11 H -0.224 1.224 12 C -0.173 4.173 13 C -0.001 4.001 14 N -0.310 5.310 15 C 0.362 3.638 16 O -0.410 6.410 17 C -0.068 4.068 18 N -0.060 5.060 19 N -0.088 5.088 20 C -0.085 4.085 21 C -0.088 4.088 22 C -0.110 4.110 23 C -0.117 4.117 24 C -0.114 4.114 25 C -0.104 4.104 26 C -0.062 4.062 27 C -0.006 4.006 28 C -0.169 4.169 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.201 0.799 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.198 0.802 39 H 0.160 0.840 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.894 -19.830 6.360 20.911 hybrid contribution -0.976 -2.729 -0.527 2.946 sum 0.918 -22.559 5.833 23.319 Atomic orbital electron populations 1.22186 0.97323 0.98977 1.02248 1.19460 0.92308 0.85807 0.91287 1.42507 1.61227 1.06596 1.26797 1.19884 1.29859 0.94439 1.01508 0.91779 1.25644 0.98943 0.95954 1.03427 1.70888 1.38683 1.37962 1.11170 0.83313 0.75289 0.76455 0.74371 1.21112 1.22411 1.22359 1.22304 0.94107 0.99141 1.01716 1.21717 0.95174 1.00351 0.82823 1.48025 1.41055 1.32809 1.09132 1.17475 0.79586 0.80081 0.86613 1.90802 1.61570 1.57374 1.31212 1.22988 0.95570 0.92299 0.95894 1.73012 1.05690 1.25279 1.01983 1.72723 1.19873 1.13999 1.02228 1.24807 0.93041 0.90727 0.99907 1.18863 0.97815 0.97056 0.95039 1.20993 0.97245 0.92710 1.00010 1.21126 0.95485 0.99890 0.95174 1.21139 0.99154 0.96059 0.95035 1.21023 0.95345 0.94113 0.99899 1.18601 0.97628 0.95002 0.94997 1.21685 0.94352 0.99524 0.85015 1.22121 0.94545 1.00694 0.99542 0.93157 0.94558 0.92419 0.79862 0.93396 0.90381 0.93347 0.92422 0.88675 0.80188 0.83986 0.84712 0.84657 0.84401 0.89310 0.90267 0.91640 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.44 37.16 0.31 -2.24 16 2 C 0.20 3.66 0.74 -131.78 -0.10 3.57 16 3 N -0.73 -16.44 4.13 -47.19 -0.19 -16.63 16 4 C -0.33 -8.41 8.68 -15.06 -0.13 -8.54 16 5 H 0.06 1.64 6.70 -52.48 -0.35 1.29 16 6 C -0.04 -1.16 5.50 -17.43 -0.10 -1.25 16 7 N -0.94 -28.20 13.70 55.49 0.76 -27.44 16 8 Si 1.07 25.39 29.92 -169.99 -5.09 20.30 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.30 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 12 C -0.13 -2.26 4.71 -26.61 -0.13 -2.38 16 13 C 0.12 2.15 6.06 -3.71 -0.02 2.13 16 14 N -0.58 -9.92 2.97 -173.87 -0.52 -10.44 16 15 C 0.58 10.15 6.22 -12.30 -0.08 10.07 16 16 O -0.53 -10.31 16.52 5.33 0.09 -10.23 16 17 C 0.09 1.48 4.63 -82.42 -0.38 1.10 16 18 N -0.23 -3.95 11.36 33.56 0.38 -3.57 16 19 N -0.26 -3.94 11.41 30.90 0.35 -3.59 16 20 C 0.09 0.98 11.20 -16.75 -0.19 0.79 16 21 C -0.08 -0.86 5.75 -106.85 -0.61 -1.48 16 22 C -0.09 -0.64 9.84 -39.54 -0.39 -1.03 16 23 C -0.10 -0.62 9.95 -39.87 -0.40 -1.02 16 24 C -0.09 -0.74 9.95 -39.83 -0.40 -1.14 16 25 C -0.08 -0.93 9.45 -39.66 -0.37 -1.31 16 26 C -0.05 -0.72 5.77 -106.56 -0.61 -1.34 16 27 C 0.12 1.92 6.17 -3.71 -0.02 1.90 16 28 C -0.13 -2.03 4.96 -26.62 -0.13 -2.16 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.08 7.27 -51.93 -0.38 0.70 16 32 H 0.37 8.76 5.30 -40.82 -0.22 8.55 16 33 H 0.25 7.50 6.77 -40.82 -0.28 7.22 16 34 H 0.08 1.44 7.31 -51.93 -0.38 1.06 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.97 6.35 -51.93 -0.33 0.64 16 37 H 0.10 2.02 7.74 -51.93 -0.40 1.62 16 38 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 41 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 42 H 0.14 1.58 7.33 -52.49 -0.38 1.20 16 43 H 0.09 1.41 6.99 -51.93 -0.36 1.05 16 44 H 0.08 1.44 6.94 -51.93 -0.36 1.08 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 370.99 15.07 5.59 5.59 Total: -1.00 -33.48 370.99 -8.41 -41.89 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.04 Total: 8.43 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -3.74 Total: -4.31 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: 0.78 Total: -61.67 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.09 Total: 20.30 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.48 -8.41 -41.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717298977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.158 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds