Wall clock time and date at job start Sat Apr 11 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46022 * 2 1 4 4 C 1.36938 * 119.99733 * 60.02854 * 3 2 1 5 5 H 1.08006 * 120.00405 * 359.97438 * 4 3 2 6 6 C 1.38815 * 119.99758 * 180.02562 * 4 3 2 7 7 N 1.31615 * 120.00207 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99879 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46910 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.46884 * 299.99939 * 8 6 4 11 11 H 1.48501 * 109.47110 * 59.99943 * 8 6 4 12 12 C 1.53043 * 109.44898 * 119.96718 * 2 1 3 13 13 C 1.53190 * 109.31500 * 181.38116 * 12 2 1 14 14 N 1.46924 * 108.76986 * 305.36140 * 13 12 2 15 15 C 1.34780 * 120.63252 * 233.58362 * 14 13 12 16 16 O 1.21542 * 120.00104 * 174.94527 * 15 14 13 17 17 C 1.47906 * 119.99678 * 354.94689 * 15 14 13 18 18 N 1.32380 * 120.63860 * 284.64235 * 17 15 14 19 19 N 1.28090 * 123.17938 * 180.02562 * 18 17 15 20 20 C 1.31793 * 123.50219 * 359.97438 * 19 18 17 21 21 C 1.40404 * 119.13708 * 0.02562 * 20 19 18 22 22 C 1.40237 * 122.74013 * 179.97438 * 21 20 19 23 23 C 1.36260 * 119.36426 * 179.19265 * 22 21 20 24 24 C 1.39379 * 121.07818 * 0.78699 * 23 22 21 25 25 C 1.36363 * 121.08531 * 359.48548 * 24 23 22 26 26 C 1.39840 * 119.41939 * 359.97438 * 25 24 23 27 27 C 1.46933 * 118.73998 * 53.61319 * 14 13 12 28 28 C 1.53037 * 109.46181 * 240.02894 * 2 1 3 29 29 H 1.09006 * 109.47195 * 59.99690 * 1 2 3 30 30 H 1.08995 * 109.47349 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47305 * 300.00335 * 1 2 3 32 32 H 0.96998 * 120.00170 * 240.02123 * 3 2 1 33 33 H 0.96998 * 119.99840 * 0.02562 * 7 6 4 34 34 H 1.09002 * 109.49381 * 301.33589 * 12 2 1 35 35 H 1.09002 * 109.49815 * 61.42060 * 12 2 1 36 36 H 1.08995 * 109.58436 * 185.58047 * 13 12 2 37 37 H 1.08999 * 109.58517 * 65.14937 * 13 12 2 38 38 H 1.08000 * 120.43276 * 179.97438 * 20 19 18 39 39 H 1.08001 * 120.31669 * 359.97438 * 22 21 20 40 40 H 1.08005 * 119.45942 * 180.25257 * 23 22 21 41 41 H 1.07997 * 119.46023 * 179.46664 * 24 23 22 42 42 H 1.07998 * 120.29255 * 179.97438 * 25 24 23 43 43 H 1.08993 * 109.58536 * 186.60033 * 27 14 13 44 44 H 1.08999 * 109.58578 * 66.17580 * 27 14 13 45 45 H 1.09003 * 109.49345 * 298.57904 * 28 2 1 46 46 H 1.08994 * 109.49705 * 58.64309 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6875 2.2242 1.0274 5 1 1.0667 1.8709 1.8374 6 6 2.1496 3.5332 1.0271 7 7 2.9057 3.9641 0.0397 8 14 1.6993 4.6829 2.4289 9 1 2.3134 6.0143 2.1938 10 1 0.2226 4.8236 2.4987 11 1 2.2044 4.1244 3.7088 12 6 2.0396 -0.7208 1.2502 13 6 3.5711 -0.6889 1.2646 14 7 4.0675 -1.2494 0.0004 15 6 4.9616 -2.2579 0.0005 16 8 5.2952 -2.7744 -1.0479 17 6 5.5367 -2.7362 1.2765 18 7 6.4645 -2.0312 1.9046 19 7 6.9956 -2.3991 3.0106 20 6 6.6745 -3.5136 3.6365 21 6 5.7008 -4.3560 3.0764 22 6 5.3021 -5.5588 3.6772 23 6 4.3383 -6.3158 3.0818 24 6 3.7551 -5.9220 1.8786 25 6 4.1232 -4.7615 1.2645 26 6 5.1014 -3.9535 1.8524 27 6 3.5713 -0.6890 -1.2640 28 6 2.0399 -0.7208 -1.2500 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.5754 1.6988 -0.7276 33 1 3.1398 3.3670 -0.6880 34 1 1.6568 -0.2207 2.1398 35 1 1.6972 -1.7556 1.2384 36 1 3.9411 -1.2849 2.0988 37 1 3.9141 0.3405 1.3677 38 1 7.1547 -3.7760 4.5676 39 1 5.7457 -5.8758 4.6095 40 1 4.0272 -7.2404 3.5453 41 1 2.9996 -6.5464 1.4252 42 1 3.6632 -4.4688 0.3322 43 1 3.9416 -1.2850 -2.0980 44 1 3.9145 0.3404 -1.3670 45 1 1.6976 -1.7557 -1.2382 46 1 1.6570 -0.2211 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717298977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:41 Heat of formation + Delta-G solvation = 39.161411 kcal Electronic energy + Delta-G solvation = -30298.594591 eV Core-core repulsion = 26381.099075 eV Total energy + Delta-G solvation = -3917.495516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.73082 -41.25805 -39.44111 -39.09863 -36.35646 -34.83874 -34.29994 -32.96091 -32.29688 -31.53753 -30.62783 -29.35288 -26.99657 -25.75660 -25.47531 -24.62771 -24.45997 -23.48222 -21.65283 -20.29991 -19.54381 -19.30295 -18.90508 -18.52625 -17.74627 -17.08255 -16.87184 -16.34954 -16.03590 -15.82998 -15.72195 -15.52519 -15.38732 -15.17189 -15.04065 -14.86156 -14.45709 -14.22745 -13.77481 -13.67567 -13.30261 -13.24839 -12.89219 -12.80037 -12.71362 -12.63239 -12.42544 -12.33556 -12.25208 -11.95659 -11.80910 -11.80390 -11.52497 -11.18934 -10.98547 -10.87337 -10.84180 -10.45456 -9.91041 -9.62153 -9.01670 -8.26731 -5.20628 -1.02999 -0.51837 0.55671 1.04450 1.57554 1.58336 1.67379 1.81241 1.82548 2.68094 2.74838 2.79881 3.14787 3.25184 3.48683 3.50906 3.58373 3.64083 3.73190 3.74056 3.88001 4.01267 4.07869 4.10933 4.18996 4.24599 4.36749 4.45749 4.47552 4.53582 4.60625 4.71208 4.73862 4.84894 4.88130 4.90519 4.96234 5.00276 5.10201 5.14415 5.18916 5.24459 5.30105 5.43498 5.52150 5.68708 5.73020 6.04683 6.59754 6.65638 7.18988 7.55331 8.09773 8.22024 9.24867 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013317 B = 0.003601 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.093911 B = 7773.888751 C = 8326.045416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.193 3.807 3 N -0.737 5.737 4 C -0.301 4.301 5 H 0.069 0.931 6 C -0.107 4.107 7 N -0.983 5.983 8 Si 1.116 2.884 9 H -0.301 1.301 10 H -0.278 1.278 11 H -0.283 1.283 12 C -0.123 4.123 13 C 0.137 3.863 14 N -0.579 5.579 15 C 0.582 3.418 16 O -0.559 6.559 17 C 0.065 3.935 18 N -0.270 5.270 19 N -0.306 5.306 20 C 0.110 3.890 21 C -0.097 4.097 22 C -0.074 4.074 23 C -0.089 4.089 24 C -0.073 4.073 25 C -0.117 4.117 26 C -0.074 4.074 27 C 0.116 3.884 28 C -0.119 4.119 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.357 0.643 33 H 0.242 0.758 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.229 0.771 39 H 0.186 0.814 40 H 0.180 0.820 41 H 0.166 0.834 42 H 0.123 0.877 43 H 0.095 0.905 44 H 0.054 0.946 45 H 0.093 0.907 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.031 -27.195 8.736 28.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.103 3.897 3 N -0.379 5.379 4 C -0.433 4.433 5 H 0.087 0.913 6 C -0.298 4.298 7 N -0.632 5.632 8 Si 0.943 3.057 9 H -0.227 1.227 10 H -0.204 1.204 11 H -0.209 1.209 12 C -0.163 4.163 13 C 0.014 3.986 14 N -0.310 5.310 15 C 0.367 3.633 16 O -0.437 6.437 17 C -0.094 4.094 18 N -0.103 5.103 19 N -0.137 5.137 20 C -0.064 4.064 21 C -0.104 4.104 22 C -0.093 4.093 23 C -0.108 4.108 24 C -0.092 4.092 25 C -0.137 4.137 26 C -0.081 4.081 27 C -0.005 4.005 28 C -0.157 4.157 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.190 0.810 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.245 0.755 39 H 0.204 0.796 40 H 0.197 0.803 41 H 0.183 0.817 42 H 0.141 0.859 43 H 0.114 0.886 44 H 0.072 0.928 45 H 0.111 0.889 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.178 -24.484 8.947 26.068 hybrid contribution -0.467 -1.605 -1.240 2.081 sum -0.289 -26.089 7.707 27.205 Atomic orbital electron populations 1.22081 0.95876 1.00976 1.00995 1.19807 0.93188 0.83717 0.93004 1.42701 1.61150 1.08314 1.25755 1.20148 1.27292 0.94368 1.01512 0.91345 1.26815 0.99726 0.98307 1.04974 1.70986 1.41670 1.38175 1.12359 0.82748 0.75959 0.74216 0.72740 1.22738 1.20432 1.20941 1.22213 0.93105 1.00606 1.00378 1.21414 0.95766 0.97851 0.83543 1.48012 1.41271 1.32783 1.08888 1.17763 0.78833 0.79513 0.87166 1.90755 1.62261 1.58272 1.32459 1.22787 0.96698 0.94176 0.95765 1.72842 1.06902 1.27066 1.03505 1.72596 1.21769 1.16790 1.02504 1.25571 0.91779 0.88812 1.00274 1.19201 0.97974 0.98683 0.94531 1.21534 0.96458 0.90440 1.00868 1.21683 0.94133 1.00939 0.94088 1.21605 0.98350 0.94328 0.94943 1.21031 0.96375 0.95879 1.00388 1.18788 0.98776 0.94241 0.96318 1.21649 0.95430 0.98192 0.85267 1.22049 0.93232 1.01915 0.98499 0.93874 0.90910 0.94178 0.80988 0.94713 0.91703 0.90181 0.91700 0.93170 0.75501 0.79646 0.80293 0.81651 0.85873 0.88634 0.92798 0.88879 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 8.44 71.98 0.61 -3.98 16 2 C 0.19 6.87 0.74 3.63 0.00 6.87 16 3 N -0.74 -34.32 4.13 -303.21 -1.25 -35.58 16 4 C -0.30 -15.89 8.68 84.03 0.73 -15.16 16 5 H 0.07 3.51 6.70 -2.91 -0.02 3.49 16 6 C -0.11 -6.12 5.50 84.86 0.47 -5.65 16 7 N -0.98 -61.58 13.70 21.65 0.30 -61.28 16 8 Si 1.12 52.34 29.92 68.60 2.05 54.39 16 9 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 C -0.12 -4.13 4.71 30.67 0.14 -3.98 16 13 C 0.14 5.07 6.06 86.36 0.52 5.59 16 14 N -0.58 -20.77 2.97 -822.27 -2.44 -23.22 16 15 C 0.58 21.49 6.22 86.80 0.54 22.03 16 16 O -0.56 -22.71 16.52 -3.85 -0.06 -22.77 16 17 C 0.07 2.22 4.63 42.43 0.20 2.42 16 18 N -0.27 -10.06 11.36 -47.73 -0.54 -10.60 16 19 N -0.31 -9.61 11.41 -56.16 -0.64 -10.25 16 20 C 0.11 2.20 11.20 85.23 0.95 3.15 16 21 C -0.10 -1.82 5.75 -21.31 -0.12 -1.95 16 22 C -0.07 -0.64 9.84 22.29 0.22 -0.42 16 23 C -0.09 -0.60 9.95 22.08 0.22 -0.38 16 24 C -0.07 -0.83 9.95 22.11 0.22 -0.61 16 25 C -0.12 -2.40 9.45 22.22 0.21 -2.19 16 26 C -0.07 -1.91 5.77 -21.12 -0.12 -2.03 16 27 C 0.12 4.02 6.17 86.36 0.53 4.55 16 28 C -0.12 -3.61 4.96 30.67 0.15 -3.46 16 29 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 31 H 0.04 1.44 7.27 -2.39 -0.02 1.42 16 32 H 0.36 18.02 5.30 -92.71 -0.49 17.53 16 33 H 0.24 15.16 6.77 -92.71 -0.63 14.53 16 34 H 0.06 2.35 7.31 -2.39 -0.02 2.34 16 35 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.06 2.30 6.35 -2.39 -0.02 2.28 16 37 H 0.05 2.30 7.74 -2.39 -0.02 2.28 16 38 H 0.23 1.96 8.06 -2.91 -0.02 1.93 16 39 H 0.19 0.01 8.06 -2.91 -0.02 -0.01 16 40 H 0.18 -0.25 8.06 -2.91 -0.02 -0.28 16 41 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 42 H 0.12 2.80 7.33 -2.91 -0.02 2.78 16 43 H 0.10 3.16 6.99 -2.39 -0.02 3.14 16 44 H 0.05 2.12 6.94 -2.39 -0.02 2.11 16 45 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -80.59 370.99 3.55 -77.04 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 0.67 Total: 27.45 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 5.47 Total: 4.82 kcal Atomic # 7 Polarization: -136.34 SS G_CDS: -4.58 Total: -140.93 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.06 Total: -22.77 kcal Atomic # 14 Polarization: 52.34 SS G_CDS: 2.05 Total: 54.39 kcal Total: -80.59 3.55 -77.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717298977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.199 kcal (2) G-P(sol) polarization free energy of solvation -80.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds