Wall clock time and date at job start Sat Apr 11 2020 06:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30834 * 125.90198 * 2 1 4 4 N 1.40085 * 108.20863 * 179.97438 * 3 2 1 5 5 C 1.46502 * 126.03528 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92375 * 359.75644 * 4 3 2 7 7 C 1.35324 * 107.74590 * 0.39264 * 6 4 3 8 8 C 1.50698 * 126.03829 * 179.87352 * 7 6 4 9 9 N 1.46898 * 109.46959 * 259.68649 * 8 7 6 10 10 C 1.46905 * 111.00100 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.46878 * 318.66200 * 10 9 8 12 12 C 1.53005 * 109.46738 * 78.66254 * 10 9 8 13 13 C 1.52997 * 109.47187 * 198.66528 * 10 9 8 14 14 N 1.46497 * 109.47525 * 56.70138 * 13 10 9 15 15 C 1.46500 * 119.99287 * 83.70799 * 14 13 10 16 16 C 1.34770 * 120.00373 * 263.70858 * 14 13 10 17 17 O 1.21284 * 120.00039 * 359.72584 * 16 14 13 18 18 C 1.50700 * 119.99936 * 179.97438 * 16 14 13 19 19 S 1.81002 * 109.47186 * 180.02562 * 18 16 14 20 20 C 1.76200 * 100.00156 * 179.97438 * 19 18 16 21 21 H 1.07995 * 119.99784 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99873 * 179.97438 * 20 19 18 23 23 N 1.31636 * 120.00269 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99993 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46906 * 90.00338 * 24 22 20 26 26 H 1.48495 * 109.47053 * 210.00301 * 24 22 20 27 27 H 1.48500 * 109.47000 * 330.00763 * 24 22 20 28 28 H 1.09006 * 109.46722 * 270.02120 * 1 2 3 29 29 H 1.08994 * 109.47096 * 30.02098 * 1 2 3 30 30 H 1.08996 * 109.47476 * 150.02337 * 1 2 3 31 31 H 1.08994 * 109.47049 * 89.97388 * 5 4 3 32 32 H 1.08999 * 109.46765 * 209.97223 * 5 4 3 33 33 H 1.08996 * 109.47213 * 329.97294 * 5 4 3 34 34 H 1.08001 * 126.12830 * 180.23734 * 6 4 3 35 35 H 1.08997 * 109.47433 * 139.68922 * 8 7 6 36 36 H 1.09001 * 109.47242 * 19.68532 * 8 7 6 37 37 H 1.00899 * 110.99931 * 56.04975 * 9 8 7 38 38 H 1.08996 * 109.46875 * 60.00451 * 12 10 9 39 39 H 1.09000 * 109.46397 * 179.97438 * 12 10 9 40 40 H 1.09003 * 109.47110 * 300.00151 * 12 10 9 41 41 H 1.09006 * 109.46777 * 296.70217 * 13 10 9 42 42 H 1.09001 * 109.46750 * 176.71123 * 13 10 9 43 43 H 1.08997 * 109.47511 * 265.11340 * 15 14 13 44 44 H 1.08997 * 109.47454 * 25.12698 * 15 14 13 45 45 H 1.09008 * 109.46924 * 145.12154 * 15 14 13 46 46 H 1.08998 * 109.47456 * 300.00261 * 18 16 14 47 47 H 1.08991 * 109.47402 * 60.00429 * 18 16 14 48 48 H 0.97000 * 120.00219 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0006 5 6 4.7899 1.5008 0.0013 6 6 3.6142 -0.7154 0.0064 7 6 2.3271 -1.1331 0.0006 8 6 1.8599 -2.5658 0.0013 9 7 1.4795 -2.9574 -1.3625 10 6 1.0183 -4.3517 -1.4006 11 1 1.6609 -4.9643 -0.7682 12 6 -0.4218 -4.4266 -0.8891 13 6 1.0761 -4.8688 -2.8394 14 7 2.4392 -4.7239 -3.3561 15 6 3.4448 -5.7494 -3.0673 16 6 2.7682 -3.6473 -4.0970 17 8 1.9344 -2.8008 -4.3402 18 6 4.1706 -3.4980 -4.6280 19 16 4.2964 -1.9613 -5.5761 20 6 5.9880 -2.0397 -6.0629 21 1 6.5986 -2.8776 -5.7605 22 6 6.5355 -1.0252 -6.8359 23 7 5.7911 -0.0042 -7.2049 24 14 8.3290 -1.1079 -7.3514 25 1 8.4383 -1.8183 -8.6509 26 1 8.8673 0.2688 -7.4930 27 1 9.1072 -1.8401 -6.3201 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5141 30 1 -0.3634 -0.8901 -0.5134 31 1 5.0821 1.7159 1.0291 32 1 5.6098 0.9980 -0.5118 33 1 4.5568 2.4331 -0.5129 34 1 4.4891 -1.3486 0.0119 35 1 0.9988 -2.6669 0.6618 36 1 2.6653 -3.2105 0.3531 37 1 2.2423 -2.8115 -2.0066 38 1 -1.0643 -3.8140 -1.5215 39 1 -0.7641 -5.4610 -0.9178 40 1 -0.4629 -4.0581 0.1359 41 1 0.3892 -4.2935 -3.4601 42 1 0.7897 -5.9203 -2.8592 43 1 4.0224 -5.4554 -2.1910 44 1 2.9487 -6.7004 -2.8733 45 1 4.1117 -5.8555 -3.9230 46 1 4.8733 -3.4693 -3.7953 47 1 4.4067 -4.3439 -5.2735 48 1 6.1737 0.7051 -7.7448 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725483225.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:09 Heat of formation + Delta-G solvation = 20.165529 kcal Electronic energy + Delta-G solvation = -28064.560032 eV Core-core repulsion = 24281.684744 eV Total energy + Delta-G solvation = -3782.875288 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.16328 -40.98854 -38.06024 -36.15101 -34.82449 -34.58709 -33.02834 -31.12867 -30.55641 -29.89640 -28.21175 -27.68986 -26.95261 -26.27966 -24.67778 -21.66894 -21.54508 -20.60509 -20.39482 -19.51846 -18.00103 -17.82451 -17.13643 -17.02955 -16.88356 -16.55206 -16.19658 -15.88013 -15.58158 -15.09486 -14.92973 -14.55426 -14.42367 -14.35840 -14.20964 -13.88975 -13.62697 -13.52806 -13.43031 -13.27072 -13.15370 -13.03219 -12.95327 -12.90575 -12.89205 -12.74801 -12.57812 -12.42192 -12.28990 -11.86327 -11.69401 -11.40377 -11.14828 -10.78892 -10.23349 -10.15676 -9.64261 -9.33963 -9.10786 -8.65716 -8.34572 -6.12243 0.94963 1.26565 1.40703 1.46360 1.55926 1.65159 1.68985 1.77435 2.17423 2.27914 2.99451 3.28001 3.42510 3.65813 3.79199 3.89212 3.99850 4.20744 4.21742 4.24941 4.33063 4.36281 4.38787 4.44401 4.47325 4.51768 4.59824 4.61754 4.63491 4.71619 4.77932 4.83291 4.93987 4.97141 5.05950 5.09403 5.15751 5.16561 5.21670 5.40682 5.47989 5.66800 5.80336 6.14155 6.18976 6.28482 6.36804 6.49435 6.80195 7.06530 7.24088 8.74362 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.008705 B = 0.003998 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.673225 B = 7001.033503 C = 9271.449245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.078 3.922 3 N -0.344 5.344 4 N -0.384 5.384 5 C 0.096 3.904 6 C 0.056 3.944 7 C -0.250 4.250 8 C 0.150 3.850 9 N -0.692 5.692 10 C 0.071 3.929 11 H 0.056 0.944 12 C -0.133 4.133 13 C 0.112 3.888 14 N -0.614 5.614 15 C 0.072 3.928 16 C 0.527 3.473 17 O -0.547 6.547 18 C -0.123 4.123 19 S -0.149 6.149 20 C -0.544 4.544 21 H 0.081 0.919 22 C 0.015 3.985 23 N -0.912 5.912 24 Si 0.996 3.004 25 H -0.269 1.269 26 H -0.279 1.279 27 H -0.256 1.256 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.194 0.806 35 H 0.088 0.912 36 H 0.040 0.960 37 H 0.331 0.669 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.115 0.885 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.070 0.930 46 H 0.102 0.898 47 H 0.103 0.897 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.945 -12.684 19.249 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.087 4.087 3 N -0.168 5.168 4 N -0.165 5.165 5 C -0.045 4.045 6 C -0.091 4.091 7 C -0.262 4.262 8 C 0.021 3.979 9 N -0.326 5.326 10 C -0.039 4.039 11 H 0.074 0.926 12 C -0.191 4.191 13 C -0.010 4.010 14 N -0.349 5.349 15 C -0.070 4.070 16 C 0.314 3.686 17 O -0.424 6.424 18 C -0.274 4.274 19 S 0.078 5.922 20 C -0.692 4.692 21 H 0.100 0.900 22 C -0.190 4.190 23 N -0.549 5.549 24 Si 0.817 3.183 25 H -0.194 1.194 26 H -0.204 1.204 27 H -0.180 1.180 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.210 0.790 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.150 0.850 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.133 0.867 43 H 0.082 0.918 44 H 0.124 0.876 45 H 0.089 0.911 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.628 -9.665 18.855 22.200 hybrid contribution 2.918 -1.567 -0.437 3.340 sum -3.711 -11.232 18.418 21.889 Atomic orbital electron populations 1.20197 0.85395 1.03451 1.03420 1.22660 0.98046 0.90257 0.97783 1.77197 0.87700 1.24258 1.27681 1.48607 1.05677 1.05453 1.56739 1.22101 0.83039 0.94780 1.04544 1.22818 1.00067 0.85251 1.01015 1.20137 0.91672 0.96928 1.17420 1.20083 0.98936 0.88619 0.90296 1.60540 1.42633 1.22056 1.07341 1.21965 0.97997 0.88269 0.95686 0.92585 1.21718 0.93964 1.02324 1.01098 1.21853 0.82290 1.02815 0.94054 1.47892 1.12944 1.21979 1.52086 1.22058 0.91747 0.91306 1.01844 1.20067 0.88907 0.81569 0.78025 1.90749 1.51501 1.42092 1.58012 1.23367 0.97334 1.03267 1.03480 1.85686 1.15640 1.25190 1.65684 1.23185 0.96086 1.11122 1.38821 0.90040 1.26094 1.04042 0.93862 0.94954 1.70199 1.38548 1.10358 1.35762 0.84998 0.76399 0.77861 0.79007 1.19378 1.20411 1.17986 0.88944 0.92013 0.89522 0.88575 0.88020 0.89984 0.78959 0.89388 0.94241 0.84960 0.93320 0.90279 0.91934 0.91706 0.86679 0.91799 0.87633 0.91125 0.88014 0.87844 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.66 10.26 71.24 0.73 -0.93 16 2 C 0.08 2.48 7.22 43.10 0.31 2.79 16 3 N -0.34 -12.04 12.57 -47.38 -0.60 -12.64 16 4 N -0.38 -11.56 4.01 -369.57 -1.48 -13.04 16 5 C 0.10 2.07 11.47 127.77 1.47 3.54 16 6 C 0.06 1.55 11.40 83.54 0.95 2.50 16 7 C -0.25 -7.14 5.61 -20.14 -0.11 -7.26 16 8 C 0.15 3.43 5.60 85.56 0.48 3.91 16 9 N -0.69 -18.42 6.28 -495.57 -3.11 -21.53 16 10 C 0.07 1.37 2.92 44.92 0.13 1.50 16 11 H 0.06 0.89 7.91 -2.39 -0.02 0.87 16 12 C -0.13 -2.06 9.34 71.98 0.67 -1.39 16 13 C 0.11 2.38 5.22 86.38 0.45 2.83 16 14 N -0.61 -15.22 2.52 -846.77 -2.14 -17.36 16 15 C 0.07 1.15 10.19 127.77 1.30 2.45 16 16 C 0.53 19.35 6.12 87.66 0.54 19.88 16 17 O -0.55 -25.37 14.68 -3.04 -0.04 -25.42 16 18 C -0.12 -4.88 4.77 71.24 0.34 -4.54 16 19 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16 20 C -0.54 -30.90 9.50 67.95 0.65 -30.25 16 21 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 22 C 0.02 0.86 5.49 84.86 0.47 1.33 16 23 N -0.91 -56.33 13.22 21.65 0.29 -56.05 16 24 Si 1.00 43.24 29.55 68.60 2.03 45.27 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 28 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 2.15 7.96 -2.39 -0.02 2.13 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.19 4.03 8.06 -2.91 -0.02 4.00 16 35 H 0.09 1.75 7.04 -2.39 -0.02 1.73 16 36 H 0.04 0.78 8.07 -2.39 -0.02 0.76 16 37 H 0.33 10.96 5.48 -89.69 -0.49 10.47 16 38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.90 7.08 -2.39 -0.02 0.88 16 41 H 0.06 1.83 7.24 -2.38 -0.02 1.82 16 42 H 0.12 1.54 7.96 -2.39 -0.02 1.53 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.11 0.97 7.91 -2.39 -0.02 0.96 16 45 H 0.07 1.19 6.64 -2.38 -0.02 1.17 16 46 H 0.10 3.65 8.11 -2.40 -0.02 3.63 16 47 H 0.10 3.74 7.41 -2.40 -0.02 3.72 16 48 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -83.83 407.96 2.61 -81.22 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.46 Total: 32.65 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 8.37 Total: -3.64 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -7.04 Total: -120.61 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.04 Total: -25.42 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -83.83 2.61 -81.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725483225.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.382 kcal (2) G-P(sol) polarization free energy of solvation -83.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds