Wall clock time and date at job start Sat Apr 11 2020 06:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30834 * 125.90055 * 2 1 4 4 N 1.40084 * 108.20789 * 179.97438 * 3 2 1 5 5 C 1.46498 * 126.04020 * 180.02562 * 4 3 2 6 6 C 1.34949 * 107.92445 * 359.76145 * 4 3 2 7 7 C 1.35319 * 107.74336 * 0.38493 * 6 4 3 8 8 C 1.50700 * 126.03775 * 179.87159 * 7 6 4 9 9 N 1.46900 * 109.47346 * 259.69718 * 8 7 6 10 10 C 1.46901 * 111.00082 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.47113 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.46505 * 64.99752 * 11 10 9 13 13 C 1.52997 * 109.47127 * 184.99881 * 11 10 9 14 14 N 1.46500 * 109.47249 * 305.00391 * 11 10 9 15 15 C 1.46502 * 119.99711 * 299.99999 * 14 11 10 16 16 C 1.34769 * 120.00163 * 119.99832 * 14 11 10 17 17 O 1.21279 * 120.00303 * 0.02562 * 16 14 11 18 18 C 1.50701 * 119.99833 * 179.97438 * 16 14 11 19 19 S 1.81011 * 109.47088 * 180.02562 * 18 16 14 20 20 C 1.76191 * 99.99948 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00616 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99917 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99864 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99972 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47171 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47038 * 120.00461 * 24 22 20 27 27 H 1.48499 * 109.46732 * 239.99978 * 24 22 20 28 28 H 1.08996 * 109.47115 * 270.02260 * 1 2 3 29 29 H 1.09002 * 109.47010 * 30.01972 * 1 2 3 30 30 H 1.08996 * 109.47038 * 150.01931 * 1 2 3 31 31 H 1.08999 * 109.47662 * 89.97314 * 5 4 3 32 32 H 1.09002 * 109.47033 * 209.97753 * 5 4 3 33 33 H 1.09004 * 109.46574 * 329.96882 * 5 4 3 34 34 H 1.08007 * 126.12987 * 180.24149 * 6 4 3 35 35 H 1.08995 * 109.46960 * 139.69313 * 8 7 6 36 36 H 1.08997 * 109.47222 * 19.69261 * 8 7 6 37 37 H 1.00898 * 111.00079 * 56.04513 * 9 8 7 38 38 H 1.08996 * 109.46863 * 59.99952 * 10 9 8 39 39 H 1.09000 * 109.47283 * 299.99899 * 10 9 8 40 40 H 1.09002 * 109.47153 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.46832 * 60.00321 * 13 11 10 42 42 H 1.09004 * 109.47261 * 300.00303 * 13 11 10 43 43 H 1.08993 * 109.47565 * 90.00263 * 15 14 11 44 44 H 1.09007 * 109.46761 * 210.00296 * 15 14 11 45 45 H 1.09002 * 109.46792 * 329.99948 * 15 14 11 46 46 H 1.09000 * 109.47080 * 299.99533 * 18 16 14 47 47 H 1.08993 * 109.47251 * 60.00389 * 18 16 14 48 48 H 0.97004 * 119.99739 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 0.0006 5 6 4.7899 1.5007 0.0013 6 6 3.6142 -0.7154 0.0063 7 6 2.3271 -1.1330 0.0006 8 6 1.8599 -2.5658 0.0011 9 7 1.4795 -2.9574 -1.3627 10 6 1.0172 -4.3512 -1.4006 11 6 0.6303 -4.7214 -2.8338 12 1 1.5165 -4.6941 -3.4679 13 6 0.0325 -6.1297 -2.8532 14 7 -0.3587 -3.7641 -3.3355 15 6 -1.6444 -3.6121 -2.6499 16 6 -0.0857 -3.0232 -4.4277 17 8 0.9785 -3.1493 -4.9956 18 6 -1.1032 -2.0388 -4.9440 19 16 -0.4465 -1.2055 -6.4106 20 6 -1.8011 -0.1454 -6.7924 21 1 -2.6875 -0.1582 -6.1755 22 6 -1.7286 0.7069 -7.8855 23 7 -0.6482 0.7229 -8.6371 24 14 -3.1645 1.8313 -8.2899 25 1 -4.2509 1.6226 -7.2994 26 1 -2.7146 3.2457 -8.2414 27 1 -3.6696 1.5189 -9.6510 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8901 -0.5135 31 1 5.0821 1.7159 1.0291 32 1 5.6097 0.9979 -0.5118 33 1 4.5567 2.4330 -0.5130 34 1 4.4891 -1.3487 0.0119 35 1 0.9988 -2.6668 0.6617 36 1 2.6653 -3.2105 0.3529 37 1 2.2423 -2.8114 -2.0068 38 1 0.1501 -4.4642 -0.7498 39 1 1.8165 -5.0086 -1.0583 40 1 -0.2428 -6.3936 -3.8743 41 1 -0.8537 -6.1568 -2.2191 42 1 0.7683 -6.8420 -2.4799 43 1 -1.5583 -2.8429 -1.8824 44 1 -2.4086 -3.3219 -3.3710 45 1 -1.9229 -4.5584 -2.1862 46 1 -2.0195 -2.5675 -5.2068 47 1 -1.3186 -1.3002 -4.1719 48 1 -0.5977 1.3183 -9.4012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732412186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:25 Heat of formation + Delta-G solvation = 45.100733 kcal Electronic energy + Delta-G solvation = -27635.233053 eV Core-core repulsion = 23853.439036 eV Total energy + Delta-G solvation = -3781.794016 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.27904 -39.53119 -36.87876 -35.14182 -33.80232 -32.35119 -32.13887 -30.49754 -29.46278 -28.51595 -26.92544 -26.58696 -25.41102 -24.98177 -23.27890 -21.40410 -20.75334 -19.60466 -18.85941 -17.60286 -16.91821 -16.68124 -15.83552 -15.68342 -15.35962 -15.00689 -14.73655 -14.67350 -14.29537 -14.18642 -13.91804 -13.48498 -13.47314 -13.10016 -12.91881 -12.83282 -12.70624 -12.64271 -12.38043 -12.20396 -12.07563 -12.02728 -12.01453 -11.75330 -11.69433 -11.41855 -11.01481 -10.93654 -10.81952 -10.67528 -10.48282 -9.70491 -9.22385 -9.15534 -8.99843 -8.52772 -8.36816 -8.20390 -8.10706 -6.39375 -6.14232 -3.82912 1.82499 2.45500 2.69078 3.09487 3.26314 3.28891 3.32810 3.37343 3.75083 4.22221 4.28303 4.44131 4.64538 4.76228 4.93610 4.96478 5.06308 5.08496 5.17605 5.20954 5.21587 5.24654 5.28443 5.30696 5.37412 5.47073 5.52631 5.59764 5.61868 5.64179 5.69094 5.72507 5.90723 6.00331 6.01755 6.06397 6.08137 6.08630 6.15828 6.29372 6.69129 6.85232 6.92955 7.05575 7.38491 7.67387 7.73291 7.78063 8.43226 8.78864 9.31413 10.93303 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.008282 B = 0.003488 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.179226 B = 8025.229523 C =10213.829080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.100 3.900 3 N -0.300 5.300 4 N -0.379 5.379 5 C 0.104 3.896 6 C 0.058 3.942 7 C -0.234 4.234 8 C 0.144 3.856 9 N -0.677 5.677 10 C 0.052 3.948 11 C 0.138 3.862 12 H 0.098 0.902 13 C -0.159 4.159 14 N -0.601 5.601 15 C 0.084 3.916 16 C 0.541 3.459 17 O -0.525 6.525 18 C -0.147 4.147 19 S -0.064 6.064 20 C -0.531 4.531 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.869 5.869 24 Si 0.916 3.084 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.281 1.281 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.169 0.831 35 H 0.075 0.925 36 H 0.028 0.972 37 H 0.346 0.654 38 H 0.073 0.927 39 H 0.034 0.966 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.759 -9.278 22.417 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.067 4.067 3 N -0.122 5.122 4 N -0.160 5.160 5 C -0.038 4.038 6 C -0.089 4.089 7 C -0.246 4.246 8 C 0.014 3.986 9 N -0.308 5.308 10 C -0.078 4.078 11 C 0.033 3.967 12 H 0.116 0.884 13 C -0.218 4.218 14 N -0.336 5.336 15 C -0.059 4.059 16 C 0.329 3.671 17 O -0.401 6.401 18 C -0.297 4.297 19 S 0.163 5.837 20 C -0.679 4.679 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.743 3.257 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.186 0.814 35 H 0.093 0.907 36 H 0.046 0.954 37 H 0.164 0.836 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.977 -7.746 21.476 23.873 hybrid contribution -1.148 -0.377 0.541 1.324 sum 5.829 -8.122 22.017 24.181 Atomic orbital electron populations 1.20200 0.86615 1.04202 1.02208 1.22205 0.96950 0.89876 0.97624 1.77361 0.86227 1.22864 1.25773 1.48318 1.05692 1.04608 1.57357 1.21819 0.83697 0.95277 1.02967 1.22288 0.99057 0.85146 1.02370 1.19814 0.91552 0.96057 1.17159 1.20031 0.98316 0.89685 0.90531 1.60352 1.42577 1.20866 1.07039 1.22325 0.99546 0.88941 0.97030 1.20973 0.93348 0.87932 0.94399 0.88391 1.22099 1.01210 0.95766 1.02728 1.47548 1.16778 1.40517 1.28784 1.21663 0.85064 1.01404 0.97809 1.20164 0.87801 0.80116 0.78985 1.90655 1.25394 1.66678 1.57342 1.23518 1.00820 1.00231 1.05142 1.85350 1.24731 1.47144 1.26518 1.22912 1.03206 1.25672 1.16154 0.90979 1.24975 0.96679 0.96730 0.95205 1.70038 1.26860 1.37113 1.16423 0.86148 0.81341 0.79909 0.78299 1.19592 1.20629 1.20644 0.91169 0.90950 0.89461 0.91057 0.89592 0.89204 0.81429 0.90653 0.95351 0.83554 0.90907 0.94788 0.91846 0.92281 0.91792 0.92474 0.91219 0.91889 0.89673 0.89302 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.26 36.01 0.37 -0.49 16 2 C 0.10 1.39 7.22 -82.41 -0.59 0.79 16 3 N -0.30 -4.53 12.58 33.67 0.42 -4.10 16 4 N -0.38 -4.58 4.01 -68.16 -0.27 -4.86 16 5 C 0.10 0.80 11.47 59.85 0.69 1.48 16 6 C 0.06 0.63 11.40 -17.22 -0.20 0.43 16 7 C -0.23 -2.79 5.61 -105.05 -0.59 -3.38 16 8 C 0.14 1.41 5.80 -4.98 -0.03 1.38 16 9 N -0.68 -7.65 6.21 -115.06 -0.71 -8.37 16 10 C 0.05 0.49 4.98 -3.82 -0.02 0.47 16 11 C 0.14 1.61 2.88 -67.93 -0.20 1.41 16 12 H 0.10 1.39 6.90 -51.93 -0.36 1.04 16 13 C -0.16 -1.46 9.17 37.16 0.34 -1.12 16 14 N -0.60 -8.44 2.48 -173.93 -0.43 -8.87 16 15 C 0.08 0.92 9.40 59.85 0.56 1.48 16 16 C 0.54 10.49 7.69 -10.99 -0.08 10.40 16 17 O -0.53 -12.11 15.19 5.56 0.08 -12.03 16 18 C -0.15 -3.10 4.71 36.01 0.17 -2.93 16 19 S -0.06 -1.80 20.57 -107.50 -2.21 -4.01 16 20 C -0.53 -15.50 9.50 30.94 0.29 -15.21 16 21 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.74 13.22 55.49 0.73 -26.01 16 24 Si 0.92 21.90 29.55 -169.99 -5.02 16.87 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.09 1.01 7.96 -51.93 -0.41 0.60 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.35 4.55 8.72 -39.29 -0.34 4.21 16 38 H 0.07 0.62 7.84 -51.93 -0.41 0.21 16 39 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.46 6.66 -51.93 -0.35 0.12 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.79 6.44 -51.92 -0.33 0.46 16 45 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 46 H 0.09 1.68 7.40 -51.92 -0.38 1.29 16 47 H 0.09 1.80 8.11 -51.92 -0.42 1.38 16 48 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 410.92 15.07 6.19 6.19 Total: -1.00 -37.45 410.92 -8.56 -46.02 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.96 Total: 2.40 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 0.62 Total: -3.24 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.26 Total: -52.21 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.08 Total: -12.03 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.21 Total: -4.01 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -37.45 -8.56 -46.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732412186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.117 kcal (2) G-P(sol) polarization free energy of solvation -37.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds