Wall clock time and date at job start Sat Apr 11 2020 06:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30834 * 125.90055 * 2 1 4 4 N 1.40084 * 108.20789 * 179.97438 * 3 2 1 5 5 C 1.46498 * 126.04020 * 180.02562 * 4 3 2 6 6 C 1.34949 * 107.92445 * 359.76145 * 4 3 2 7 7 C 1.35319 * 107.74336 * 0.38493 * 6 4 3 8 8 C 1.50700 * 126.03775 * 179.87159 * 7 6 4 9 9 N 1.46900 * 109.47346 * 259.69718 * 8 7 6 10 10 C 1.46901 * 111.00082 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.47113 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.46505 * 64.99752 * 11 10 9 13 13 C 1.52997 * 109.47127 * 184.99881 * 11 10 9 14 14 N 1.46500 * 109.47249 * 305.00391 * 11 10 9 15 15 C 1.46502 * 119.99711 * 299.99999 * 14 11 10 16 16 C 1.34769 * 120.00163 * 119.99832 * 14 11 10 17 17 O 1.21279 * 120.00303 * 0.02562 * 16 14 11 18 18 C 1.50701 * 119.99833 * 179.97438 * 16 14 11 19 19 S 1.81011 * 109.47088 * 180.02562 * 18 16 14 20 20 C 1.76191 * 99.99948 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00616 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99917 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99864 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99972 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47171 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47038 * 120.00461 * 24 22 20 27 27 H 1.48499 * 109.46732 * 239.99978 * 24 22 20 28 28 H 1.08996 * 109.47115 * 270.02260 * 1 2 3 29 29 H 1.09002 * 109.47010 * 30.01972 * 1 2 3 30 30 H 1.08996 * 109.47038 * 150.01931 * 1 2 3 31 31 H 1.08999 * 109.47662 * 89.97314 * 5 4 3 32 32 H 1.09002 * 109.47033 * 209.97753 * 5 4 3 33 33 H 1.09004 * 109.46574 * 329.96882 * 5 4 3 34 34 H 1.08007 * 126.12987 * 180.24149 * 6 4 3 35 35 H 1.08995 * 109.46960 * 139.69313 * 8 7 6 36 36 H 1.08997 * 109.47222 * 19.69261 * 8 7 6 37 37 H 1.00898 * 111.00079 * 56.04513 * 9 8 7 38 38 H 1.08996 * 109.46863 * 59.99952 * 10 9 8 39 39 H 1.09000 * 109.47283 * 299.99899 * 10 9 8 40 40 H 1.09002 * 109.47153 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.46832 * 60.00321 * 13 11 10 42 42 H 1.09004 * 109.47261 * 300.00303 * 13 11 10 43 43 H 1.08993 * 109.47565 * 90.00263 * 15 14 11 44 44 H 1.09007 * 109.46761 * 210.00296 * 15 14 11 45 45 H 1.09002 * 109.46792 * 329.99948 * 15 14 11 46 46 H 1.09000 * 109.47080 * 299.99533 * 18 16 14 47 47 H 1.08993 * 109.47251 * 60.00389 * 18 16 14 48 48 H 0.97004 * 119.99739 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 0.0006 5 6 4.7899 1.5007 0.0013 6 6 3.6142 -0.7154 0.0063 7 6 2.3271 -1.1330 0.0006 8 6 1.8599 -2.5658 0.0011 9 7 1.4795 -2.9574 -1.3627 10 6 1.0172 -4.3512 -1.4006 11 6 0.6303 -4.7214 -2.8338 12 1 1.5165 -4.6941 -3.4679 13 6 0.0325 -6.1297 -2.8532 14 7 -0.3587 -3.7641 -3.3355 15 6 -1.6444 -3.6121 -2.6499 16 6 -0.0857 -3.0232 -4.4277 17 8 0.9785 -3.1493 -4.9956 18 6 -1.1032 -2.0388 -4.9440 19 16 -0.4465 -1.2055 -6.4106 20 6 -1.8011 -0.1454 -6.7924 21 1 -2.6875 -0.1582 -6.1755 22 6 -1.7286 0.7069 -7.8855 23 7 -0.6482 0.7229 -8.6371 24 14 -3.1645 1.8313 -8.2899 25 1 -4.2509 1.6226 -7.2994 26 1 -2.7146 3.2457 -8.2414 27 1 -3.6696 1.5189 -9.6510 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8901 -0.5135 31 1 5.0821 1.7159 1.0291 32 1 5.6097 0.9979 -0.5118 33 1 4.5567 2.4330 -0.5130 34 1 4.4891 -1.3487 0.0119 35 1 0.9988 -2.6668 0.6617 36 1 2.6653 -3.2105 0.3529 37 1 2.2423 -2.8114 -2.0068 38 1 0.1501 -4.4642 -0.7498 39 1 1.8165 -5.0086 -1.0583 40 1 -0.2428 -6.3936 -3.8743 41 1 -0.8537 -6.1568 -2.2191 42 1 0.7683 -6.8420 -2.4799 43 1 -1.5583 -2.8429 -1.8824 44 1 -2.4086 -3.3219 -3.3710 45 1 -1.9229 -4.5584 -2.1862 46 1 -2.0195 -2.5675 -5.2068 47 1 -1.3186 -1.3002 -4.1719 48 1 -0.5977 1.3183 -9.4012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732412186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:24 Heat of formation + Delta-G solvation = 18.461667 kcal Electronic energy + Delta-G solvation = -27636.388210 eV Core-core repulsion = 23853.439036 eV Total energy + Delta-G solvation = -3782.949173 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.15045 -40.84174 -37.96840 -36.17149 -34.68560 -34.57177 -33.19793 -31.38135 -30.33951 -29.99198 -27.75652 -27.66089 -27.55037 -25.77515 -24.06695 -22.52181 -21.61685 -20.55874 -20.13399 -19.49704 -18.17614 -17.66445 -16.95011 -16.86532 -16.66826 -16.50082 -16.17321 -15.67290 -15.55457 -15.19833 -14.98677 -14.58665 -14.36991 -14.32696 -14.25049 -14.00220 -13.74097 -13.45818 -13.39233 -13.29340 -13.14859 -13.01092 -12.94246 -12.89719 -12.89144 -12.76268 -12.57124 -12.49328 -12.29852 -11.73189 -11.61139 -11.40373 -11.14679 -10.70443 -10.22606 -10.15683 -9.47003 -9.35666 -9.08450 -8.63437 -8.33512 -6.10385 0.96603 1.29091 1.40881 1.48229 1.59771 1.70640 1.77022 1.78083 2.25064 2.32211 3.00458 3.31479 3.42401 3.67386 3.82583 3.92297 4.05190 4.22853 4.24532 4.31947 4.34102 4.40251 4.40575 4.44949 4.48731 4.53816 4.56640 4.64551 4.74378 4.81504 4.82619 4.84972 4.85429 4.89974 5.03177 5.12759 5.18828 5.19831 5.22418 5.35700 5.42763 5.78414 5.80828 6.16966 6.21130 6.30000 6.44863 6.48951 6.81644 7.07819 7.35168 8.76096 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.008282 B = 0.003488 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.179226 B = 8025.229523 C =10213.829080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.079 3.921 3 N -0.350 5.350 4 N -0.386 5.386 5 C 0.095 3.905 6 C 0.060 3.940 7 C -0.250 4.250 8 C 0.153 3.847 9 N -0.694 5.694 10 C 0.061 3.939 11 C 0.133 3.867 12 H 0.066 0.934 13 C -0.151 4.151 14 N -0.584 5.584 15 C 0.076 3.924 16 C 0.537 3.463 17 O -0.573 6.573 18 C -0.120 4.120 19 S -0.153 6.153 20 C -0.544 4.544 21 H 0.080 0.920 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 0.997 3.003 25 H -0.256 1.256 26 H -0.275 1.275 27 H -0.272 1.272 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.204 0.796 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.331 0.669 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.044 0.956 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.097 0.903 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.525 -10.727 24.878 27.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 N -0.174 5.174 4 N -0.168 5.168 5 C -0.045 4.045 6 C -0.087 4.087 7 C -0.262 4.262 8 C 0.024 3.976 9 N -0.324 5.324 10 C -0.069 4.069 11 C 0.030 3.970 12 H 0.084 0.916 13 C -0.210 4.210 14 N -0.317 5.317 15 C -0.066 4.066 16 C 0.325 3.675 17 O -0.453 6.453 18 C -0.271 4.271 19 S 0.074 5.926 20 C -0.691 4.691 21 H 0.098 0.902 22 C -0.191 4.191 23 N -0.549 5.549 24 Si 0.819 3.181 25 H -0.180 1.180 26 H -0.200 1.200 27 H -0.197 1.197 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.130 0.870 33 H 0.099 0.901 34 H 0.221 0.779 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.148 0.852 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.116 0.884 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.714 -9.227 24.002 26.342 hybrid contribution -0.696 -0.005 -0.109 0.705 sum 5.018 -9.233 23.892 26.101 Atomic orbital electron populations 1.20192 0.85947 1.03318 1.03250 1.22616 0.97812 0.90549 0.97749 1.77259 0.88012 1.24372 1.27770 1.48681 1.05569 1.05686 1.56824 1.22126 0.83028 0.94828 1.04509 1.22912 1.00087 0.85013 1.00678 1.20148 0.91768 0.96733 1.17576 1.20015 0.99277 0.88606 0.89722 1.60378 1.42264 1.22153 1.07619 1.22297 1.00897 0.88377 0.95313 1.21209 0.91805 0.88809 0.95204 0.91582 1.22045 1.02601 0.94066 1.02249 1.47536 1.18264 1.39044 1.26815 1.21947 0.83122 1.03820 0.97745 1.19878 0.86687 0.80543 0.80400 1.90637 1.26964 1.68361 1.59342 1.23334 1.01560 1.00445 1.01738 1.85509 1.27069 1.48770 1.31265 1.23225 1.03248 1.25976 1.16690 0.90189 1.26113 0.99855 0.98338 0.94790 1.70200 1.29375 1.38209 1.17097 0.84932 0.77461 0.77223 0.78508 1.17982 1.20029 1.19710 0.89152 0.92638 0.89326 0.89133 0.87019 0.90147 0.77935 0.89744 0.93429 0.85221 0.88862 0.92698 0.93725 0.90010 0.89596 0.91533 0.91625 0.88245 0.88018 0.88428 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.60 10.26 71.24 0.73 -0.87 16 2 C 0.08 2.18 7.22 43.10 0.31 2.49 16 3 N -0.35 -10.83 12.58 -47.39 -0.60 -11.42 16 4 N -0.39 -9.20 4.01 -369.55 -1.48 -10.68 16 5 C 0.10 1.39 11.47 127.77 1.47 2.85 16 6 C 0.06 1.23 11.40 83.54 0.95 2.18 16 7 C -0.25 -5.70 5.61 -20.14 -0.11 -5.81 16 8 C 0.15 2.61 5.80 85.56 0.50 3.11 16 9 N -0.69 -14.49 6.21 -517.93 -3.22 -17.70 16 10 C 0.06 0.96 4.98 86.31 0.43 1.39 16 11 C 0.13 2.88 2.88 44.99 0.13 3.00 16 12 H 0.07 1.89 6.90 -2.39 -0.02 1.88 16 13 C -0.15 -2.32 9.17 71.98 0.66 -1.66 16 14 N -0.58 -15.60 2.48 -822.59 -2.04 -17.64 16 15 C 0.08 1.43 9.40 127.77 1.20 2.63 16 16 C 0.54 21.10 7.69 87.66 0.67 21.77 16 17 O -0.57 -27.60 15.19 -3.03 -0.05 -27.65 16 18 C -0.12 -5.12 4.71 71.24 0.34 -4.78 16 19 S -0.15 -8.92 20.57 -56.49 -1.16 -10.08 16 20 C -0.54 -32.26 9.50 67.95 0.65 -31.61 16 21 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 22 C 0.01 0.79 5.49 84.86 0.47 1.26 16 23 N -0.91 -57.63 13.22 21.65 0.29 -57.34 16 24 Si 1.00 45.03 29.55 68.60 2.03 47.05 16 25 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.09 1.98 7.96 -2.39 -0.02 1.96 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.20 2.40 8.06 -2.91 -0.02 2.37 16 35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.33 8.58 8.72 -89.70 -0.78 7.80 16 38 H 0.09 1.14 7.84 -2.39 -0.02 1.12 16 39 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 40 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 0.90 6.66 -2.39 -0.02 0.88 16 42 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.07 1.33 6.44 -2.38 -0.02 1.31 16 45 H 0.10 1.20 6.43 -2.39 -0.02 1.19 16 46 H 0.10 3.97 7.40 -2.40 -0.02 3.95 16 47 H 0.10 3.96 8.11 -2.40 -0.02 3.95 16 48 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -86.76 410.92 2.32 -84.44 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.17 Total: 25.07 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 8.39 Total: -4.04 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -7.05 Total: -114.79 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.05 Total: -27.65 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.16 Total: -10.08 kcal Total: -86.76 2.32 -84.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732412186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.901 kcal (2) G-P(sol) polarization free energy of solvation -86.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds