Wall clock time and date at job start Sat Apr 11 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31915 * 119.04186 * 2 1 4 4 C 1.32170 * 121.03277 * 179.97438 * 3 2 1 5 5 C 1.38809 * 119.14866 * 359.97438 * 4 3 2 6 6 C 1.39493 * 118.26222 * 0.25440 * 5 4 3 7 7 C 1.48455 * 120.54755 * 179.72977 * 6 5 4 8 8 O 1.21471 * 120.00154 * 353.20489 * 7 6 5 9 9 N 1.34773 * 119.99490 * 173.20860 * 7 6 5 10 10 C 1.46504 * 120.00484 * 3.35127 * 9 7 6 11 11 C 1.52993 * 109.47025 * 82.95189 * 10 9 7 12 12 N 1.46504 * 109.47025 * 180.02562 * 11 10 9 13 13 C 1.36938 * 119.99967 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99900 * 0.02562 * 13 12 11 15 15 C 1.38808 * 120.00202 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99647 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00240 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46663 * 60.00649 * 17 15 13 19 19 H 1.48497 * 109.46904 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47202 * 300.00600 * 17 15 13 21 21 C 1.46505 * 119.99535 * 183.35445 * 9 7 6 22 22 C 1.50702 * 109.47403 * 85.74300 * 21 9 7 23 23 C 1.38237 * 119.99533 * 274.25700 * 22 21 9 24 24 C 1.38229 * 119.99831 * 179.76618 * 23 22 21 25 25 C 1.38234 * 120.00000 * 0.50023 * 24 23 22 26 26 C 1.38229 * 120.00043 * 359.74993 * 25 24 23 27 27 C 1.38233 * 120.00187 * 359.97438 * 26 25 24 28 28 N 1.31557 * 119.04088 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47416 * 89.99893 * 1 2 3 30 30 H 1.08997 * 109.47261 * 210.00045 * 1 2 3 31 31 H 1.09006 * 109.46796 * 329.99545 * 1 2 3 32 32 H 1.08005 * 120.42581 * 180.02562 * 4 3 2 33 33 H 1.08003 * 120.86684 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.46813 * 202.95421 * 10 9 7 35 35 H 1.09003 * 109.46676 * 322.94900 * 10 9 7 36 36 H 1.09007 * 109.47183 * 300.00046 * 11 10 9 37 37 H 1.09001 * 109.47445 * 59.99780 * 11 10 9 38 38 H 0.96992 * 119.99872 * 0.02562 * 12 11 10 39 39 H 0.97005 * 119.99678 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.46771 * 205.74055 * 21 9 7 41 41 H 1.09000 * 109.47223 * 325.73566 * 21 9 7 42 42 H 1.07998 * 120.00077 * 359.97438 * 23 22 21 43 43 H 1.08004 * 120.00460 * 180.22392 * 24 23 22 44 44 H 1.08004 * 119.99948 * 179.72675 * 25 24 23 45 45 H 1.08006 * 120.00504 * 179.97438 * 26 25 24 46 46 H 1.07994 * 120.00459 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1533 0.0000 4 6 3.4683 1.1992 0.0005 5 6 4.1861 0.0111 0.0016 6 6 3.4760 -1.1896 -0.0034 7 6 4.1925 -2.4898 -0.0085 8 8 5.4005 -2.5172 -0.1329 9 7 3.5025 -3.6398 0.1248 10 6 2.0397 -3.6119 0.2010 11 6 1.4567 -3.5451 -1.2120 12 7 -0.0061 -3.5165 -1.1358 13 6 -0.7505 -3.4559 -2.2836 14 1 -0.2592 -3.4295 -3.2450 15 6 -2.1364 -3.4294 -2.2115 16 7 -2.7351 -3.4620 -1.0398 17 14 -3.1518 -3.3460 -3.7772 18 1 -2.8591 -4.5326 -4.6207 19 1 -4.5956 -3.3297 -3.4305 20 1 -2.8077 -2.1101 -4.5251 21 6 4.2153 -4.9179 0.1936 22 6 4.6273 -5.1873 1.6179 23 6 5.8125 -4.6682 2.1045 24 6 6.1881 -4.9112 3.4124 25 6 5.3837 -5.6820 4.2307 26 6 4.2011 -6.2055 3.7426 27 6 3.8226 -5.9577 2.4364 28 7 2.1456 -1.1502 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 3.9825 2.1490 0.0009 33 1 5.2661 0.0163 0.0016 34 1 1.6845 -4.5144 0.6983 35 1 1.7220 -2.7362 0.7670 36 1 1.8119 -2.6425 -1.7093 37 1 1.7744 -4.4207 -1.7780 38 1 -0.4473 -3.5398 -0.2723 39 1 -3.7037 -3.4431 -0.9894 40 1 3.5610 -5.7179 -0.1529 41 1 5.1018 -4.8740 -0.4390 42 1 6.4433 -4.0699 1.4638 43 1 7.1123 -4.5026 3.7937 44 1 5.6794 -5.8756 5.2513 45 1 3.5727 -6.8081 4.3817 46 1 2.8989 -6.3670 2.0549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733571410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:36 Heat of formation + Delta-G solvation = 77.759026 kcal Electronic energy + Delta-G solvation = -29689.404701 eV Core-core repulsion = 25773.582903 eV Total energy + Delta-G solvation = -3915.821798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.31676 -39.87226 -38.76121 -36.31037 -34.32395 -33.86135 -33.06569 -31.94729 -30.94999 -30.86791 -28.24391 -27.76140 -26.91687 -24.84842 -23.68101 -22.94708 -22.57902 -21.53797 -21.47726 -19.66703 -17.95780 -17.44105 -16.97573 -16.53474 -16.07951 -15.88803 -15.51172 -15.20929 -15.09744 -14.74864 -14.49267 -14.37263 -13.90112 -13.61072 -13.46248 -13.21438 -13.13681 -12.97388 -12.79976 -12.54793 -12.21650 -11.96784 -11.87873 -11.54186 -11.27899 -11.15483 -11.01896 -10.86404 -10.83289 -10.73656 -10.38269 -10.30472 -10.13157 -9.72062 -9.41075 -9.08042 -8.96205 -8.83770 -8.74650 -8.50080 -6.87938 -5.75159 -3.02173 0.56191 0.98862 1.21321 1.36388 2.78000 2.92338 3.44062 3.49371 3.49895 3.75548 3.86381 3.93211 4.10278 4.39670 4.63741 4.74783 4.77159 4.87177 4.94531 5.01239 5.09353 5.18748 5.43475 5.46217 5.48594 5.50981 5.60379 5.61624 5.65528 5.92835 5.95622 5.99421 6.01969 6.08871 6.11572 6.15646 6.37099 6.40732 6.44900 6.49218 6.57069 6.65478 6.88005 6.90558 6.94631 7.00528 7.39397 7.71531 7.99289 8.17403 8.43839 9.55422 10.13044 10.49206 11.47312 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009637 B = 0.003917 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.861476 B = 7146.533120 C = 9060.733736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.326 3.674 3 N -0.510 5.510 4 C 0.147 3.853 5 C -0.187 4.187 6 C 0.131 3.869 7 C 0.573 3.427 8 O -0.535 6.535 9 N -0.577 5.577 10 C 0.091 3.909 11 C 0.156 3.844 12 N -0.721 5.721 13 C -0.231 4.231 14 H 0.065 0.935 15 C -0.011 4.011 16 N -0.932 5.932 17 Si 0.902 3.098 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.287 1.287 21 C 0.152 3.848 22 C -0.105 4.105 23 C -0.097 4.097 24 C -0.127 4.127 25 C -0.120 4.120 26 C -0.125 4.125 27 C -0.102 4.102 28 N -0.463 5.463 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.172 0.828 33 H 0.154 0.846 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.021 0.979 37 H 0.009 0.991 38 H 0.383 0.617 39 H 0.254 0.746 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.129 0.871 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.996 1.757 9.172 18.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.060 3.940 3 N -0.225 5.225 4 C -0.020 4.020 5 C -0.210 4.210 6 C -0.017 4.017 7 C 0.359 3.641 8 O -0.412 6.412 9 N -0.306 5.306 10 C -0.031 4.031 11 C 0.028 3.972 12 N -0.366 5.366 13 C -0.363 4.363 14 H 0.083 0.917 15 C -0.207 4.207 16 N -0.581 5.581 17 Si 0.733 3.267 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.214 1.214 21 C 0.030 3.970 22 C -0.106 4.106 23 C -0.116 4.116 24 C -0.145 4.145 25 C -0.138 4.138 26 C -0.143 4.143 27 C -0.121 4.121 28 N -0.180 5.180 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.189 0.811 33 H 0.172 0.828 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.039 0.961 37 H 0.027 0.973 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.147 0.853 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 15.573 1.690 8.919 18.025 hybrid contribution 0.136 0.020 -0.647 0.661 sum 15.708 1.710 8.272 17.835 Atomic orbital electron populations 1.20626 0.84182 1.04114 1.05168 1.23651 0.98839 0.82696 0.88774 1.68253 1.10167 1.30915 1.13155 1.23279 0.89693 0.98340 0.90724 1.22816 1.03318 0.93125 1.01762 1.21603 0.90489 0.94385 0.95244 1.17853 0.86150 0.83027 0.77043 1.90715 1.13164 1.86731 1.50576 1.47856 1.08327 1.05022 1.69442 1.22483 0.76044 1.04232 1.00356 1.20780 0.86207 0.97319 0.92931 1.42066 0.98749 1.89250 1.06491 1.19102 0.88413 1.42204 0.86542 0.91678 1.24637 0.96356 1.03291 0.96374 1.69635 1.08570 1.57950 1.21949 0.86351 0.79536 0.77809 0.82984 1.21470 1.21733 1.21435 1.20468 0.98292 0.85412 0.92868 1.20241 0.95224 0.98482 0.96635 1.21273 0.96299 0.98302 0.95724 1.21153 0.99926 0.99264 0.94198 1.21159 0.95060 0.97992 0.99576 1.21135 0.96936 1.00478 0.95754 1.21154 0.99133 0.97942 0.93843 1.68949 1.07665 1.29469 1.11906 0.88603 0.88442 0.90413 0.81106 0.82786 0.91212 0.86481 0.96092 0.97290 0.78332 0.93570 0.88809 0.89022 0.85267 0.86296 0.86367 0.86081 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 10.31 36.00 0.37 -0.94 16 2 C 0.33 5.25 7.64 -157.30 -1.20 4.04 16 3 N -0.51 -7.47 10.32 -10.73 -0.11 -7.58 16 4 C 0.15 1.75 11.31 -17.19 -0.19 1.55 16 5 C -0.19 -2.39 9.72 -38.90 -0.38 -2.77 16 6 C 0.13 2.02 6.53 -82.64 -0.54 1.48 16 7 C 0.57 9.04 7.58 -12.05 -0.09 8.95 16 8 O -0.54 -8.80 14.83 5.39 0.08 -8.72 16 9 N -0.58 -8.59 2.48 -175.94 -0.44 -9.03 16 10 C 0.09 1.48 5.08 -4.04 -0.02 1.46 16 11 C 0.16 3.10 5.94 -4.04 -0.02 3.07 16 12 N -0.72 -17.05 5.60 -59.91 -0.34 -17.39 16 13 C -0.23 -6.17 9.99 -15.06 -0.15 -6.33 16 14 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 15 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 16 N -0.93 -26.55 13.06 55.49 0.72 -25.83 16 17 Si 0.90 21.85 29.55 -169.99 -5.02 16.82 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 C 0.15 1.95 5.49 -5.19 -0.03 1.92 16 22 C -0.10 -1.31 5.43 -104.62 -0.57 -1.87 16 23 C -0.10 -1.20 9.51 -39.58 -0.38 -1.58 16 24 C -0.13 -1.39 10.05 -39.59 -0.40 -1.78 16 25 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 26 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 27 C -0.10 -1.19 9.68 -39.58 -0.38 -1.58 16 28 N -0.46 -7.63 4.50 -7.32 -0.03 -7.66 16 29 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 30 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.17 1.32 8.06 -52.48 -0.42 0.89 16 33 H 0.15 1.68 7.75 -52.48 -0.41 1.27 16 34 H 0.07 1.09 8.02 -51.93 -0.42 0.67 16 35 H 0.12 2.01 5.23 -51.98 -0.27 1.73 16 36 H 0.02 0.45 6.80 -51.93 -0.35 0.10 16 37 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.38 9.43 7.67 -40.82 -0.31 9.12 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.09 1.10 7.95 -51.93 -0.41 0.69 16 41 H 0.09 1.17 7.48 -51.93 -0.39 0.79 16 42 H 0.13 1.66 7.01 -52.49 -0.37 1.29 16 43 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 44 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 45 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 46 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 388.44 15.07 5.85 5.85 Total: -1.00 -30.73 388.44 -10.44 -41.16 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -6.28 Total: 10.46 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -4.87 Total: 1.90 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -0.19 Total: -67.48 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.08 Total: -8.72 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.73 -10.44 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733571410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.923 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds