Wall clock time and date at job start Sat Apr 11 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31915 * 119.04186 * 2 1 4 4 C 1.32170 * 121.03277 * 179.97438 * 3 2 1 5 5 C 1.38809 * 119.14866 * 359.97438 * 4 3 2 6 6 C 1.39493 * 118.26222 * 0.25440 * 5 4 3 7 7 C 1.48455 * 120.54755 * 179.72977 * 6 5 4 8 8 O 1.21471 * 120.00154 * 353.20489 * 7 6 5 9 9 N 1.34773 * 119.99490 * 173.20860 * 7 6 5 10 10 C 1.46504 * 120.00484 * 3.35127 * 9 7 6 11 11 C 1.52993 * 109.47025 * 82.95189 * 10 9 7 12 12 N 1.46504 * 109.47025 * 180.02562 * 11 10 9 13 13 C 1.36938 * 119.99967 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99900 * 0.02562 * 13 12 11 15 15 C 1.38808 * 120.00202 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99647 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00240 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46663 * 60.00649 * 17 15 13 19 19 H 1.48497 * 109.46904 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47202 * 300.00600 * 17 15 13 21 21 C 1.46505 * 119.99535 * 183.35445 * 9 7 6 22 22 C 1.50702 * 109.47403 * 85.74300 * 21 9 7 23 23 C 1.38237 * 119.99533 * 274.25700 * 22 21 9 24 24 C 1.38229 * 119.99831 * 179.76618 * 23 22 21 25 25 C 1.38234 * 120.00000 * 0.50023 * 24 23 22 26 26 C 1.38229 * 120.00043 * 359.74993 * 25 24 23 27 27 C 1.38233 * 120.00187 * 359.97438 * 26 25 24 28 28 N 1.31557 * 119.04088 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47416 * 89.99893 * 1 2 3 30 30 H 1.08997 * 109.47261 * 210.00045 * 1 2 3 31 31 H 1.09006 * 109.46796 * 329.99545 * 1 2 3 32 32 H 1.08005 * 120.42581 * 180.02562 * 4 3 2 33 33 H 1.08003 * 120.86684 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.46813 * 202.95421 * 10 9 7 35 35 H 1.09003 * 109.46676 * 322.94900 * 10 9 7 36 36 H 1.09007 * 109.47183 * 300.00046 * 11 10 9 37 37 H 1.09001 * 109.47445 * 59.99780 * 11 10 9 38 38 H 0.96992 * 119.99872 * 0.02562 * 12 11 10 39 39 H 0.97005 * 119.99678 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.46771 * 205.74055 * 21 9 7 41 41 H 1.09000 * 109.47223 * 325.73566 * 21 9 7 42 42 H 1.07998 * 120.00077 * 359.97438 * 23 22 21 43 43 H 1.08004 * 120.00460 * 180.22392 * 24 23 22 44 44 H 1.08004 * 119.99948 * 179.72675 * 25 24 23 45 45 H 1.08006 * 120.00504 * 179.97438 * 26 25 24 46 46 H 1.07994 * 120.00459 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1533 0.0000 4 6 3.4683 1.1992 0.0005 5 6 4.1861 0.0111 0.0016 6 6 3.4760 -1.1896 -0.0034 7 6 4.1925 -2.4898 -0.0085 8 8 5.4005 -2.5172 -0.1329 9 7 3.5025 -3.6398 0.1248 10 6 2.0397 -3.6119 0.2010 11 6 1.4567 -3.5451 -1.2120 12 7 -0.0061 -3.5165 -1.1358 13 6 -0.7505 -3.4559 -2.2836 14 1 -0.2592 -3.4295 -3.2450 15 6 -2.1364 -3.4294 -2.2115 16 7 -2.7351 -3.4620 -1.0398 17 14 -3.1518 -3.3460 -3.7772 18 1 -2.8591 -4.5326 -4.6207 19 1 -4.5956 -3.3297 -3.4305 20 1 -2.8077 -2.1101 -4.5251 21 6 4.2153 -4.9179 0.1936 22 6 4.6273 -5.1873 1.6179 23 6 5.8125 -4.6682 2.1045 24 6 6.1881 -4.9112 3.4124 25 6 5.3837 -5.6820 4.2307 26 6 4.2011 -6.2055 3.7426 27 6 3.8226 -5.9577 2.4364 28 7 2.1456 -1.1502 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 3.9825 2.1490 0.0009 33 1 5.2661 0.0163 0.0016 34 1 1.6845 -4.5144 0.6983 35 1 1.7220 -2.7362 0.7670 36 1 1.8119 -2.6425 -1.7093 37 1 1.7744 -4.4207 -1.7780 38 1 -0.4473 -3.5398 -0.2723 39 1 -3.7037 -3.4431 -0.9894 40 1 3.5610 -5.7179 -0.1529 41 1 5.1018 -4.8740 -0.4390 42 1 6.4433 -4.0699 1.4638 43 1 7.1123 -4.5026 3.7937 44 1 5.6794 -5.8756 5.2513 45 1 3.5727 -6.8081 4.3817 46 1 2.8989 -6.3670 2.0549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733571410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:35 Heat of formation + Delta-G solvation = 61.920129 kcal Electronic energy + Delta-G solvation = -29690.091527 eV Core-core repulsion = 25773.582903 eV Total energy + Delta-G solvation = -3916.508624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.45937 -40.95606 -39.73746 -37.69202 -36.00792 -35.01640 -34.19845 -33.40117 -32.36824 -31.78181 -29.46855 -29.31445 -28.01224 -26.10625 -25.34779 -24.07016 -23.53265 -23.11729 -22.43669 -20.85610 -19.35000 -18.94744 -18.10933 -17.76651 -17.26901 -17.05805 -16.57386 -16.45164 -16.21411 -16.05807 -15.70410 -15.58619 -15.22984 -15.12190 -14.99310 -14.51443 -14.28310 -14.13441 -14.04402 -13.49176 -13.46078 -13.20152 -13.07074 -12.95283 -12.88081 -12.74886 -12.51245 -12.20594 -12.07198 -11.89018 -11.86613 -11.77886 -11.63509 -11.52560 -10.84877 -10.51884 -10.18504 -9.82289 -9.74842 -9.69309 -8.88335 -7.86156 -5.12507 -0.57911 -0.07133 0.33136 0.50145 1.50991 1.51450 1.57219 1.58536 1.78918 2.58985 2.67541 2.75905 2.93259 3.03038 3.33739 3.47141 3.76989 3.81707 3.88639 4.02458 4.15544 4.17003 4.22533 4.28955 4.33089 4.41174 4.45277 4.48951 4.57605 4.70726 4.74592 4.74961 4.76346 4.84771 5.05134 5.07645 5.08423 5.16451 5.30503 5.45391 5.49174 5.55529 5.56751 5.61231 5.67922 5.83739 6.10640 6.14518 6.35213 6.79832 7.01888 7.43397 8.16598 8.44760 9.36009 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009637 B = 0.003917 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.861476 B = 7146.533120 C = 9060.733736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.309 3.691 3 N -0.518 5.518 4 C 0.158 3.842 5 C -0.174 4.174 6 C 0.104 3.896 7 C 0.570 3.430 8 O -0.545 6.545 9 N -0.575 5.575 10 C 0.110 3.890 11 C 0.167 3.833 12 N -0.723 5.723 13 C -0.236 4.236 14 H 0.061 0.939 15 C -0.058 4.058 16 N -0.957 5.957 17 Si 0.959 3.041 18 H -0.285 1.285 19 H -0.294 1.294 20 H -0.284 1.284 21 C 0.151 3.849 22 C -0.116 4.116 23 C -0.112 4.112 24 C -0.132 4.132 25 C -0.119 4.119 26 C -0.129 4.129 27 C -0.114 4.114 28 N -0.482 5.482 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.220 0.780 33 H 0.176 0.824 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.008 0.992 37 H 0.004 0.996 38 H 0.377 0.623 39 H 0.250 0.750 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.119 0.881 43 H 0.138 0.862 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.392 2.322 9.951 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.043 3.957 3 N -0.233 5.233 4 C -0.010 4.010 5 C -0.197 4.197 6 C -0.042 4.042 7 C 0.357 3.643 8 O -0.423 6.423 9 N -0.304 5.304 10 C -0.013 4.013 11 C 0.039 3.961 12 N -0.366 5.366 13 C -0.368 4.368 14 H 0.079 0.921 15 C -0.252 4.252 16 N -0.608 5.608 17 Si 0.789 3.211 18 H -0.211 1.211 19 H -0.220 1.220 20 H -0.210 1.210 21 C 0.029 3.971 22 C -0.117 4.117 23 C -0.131 4.131 24 C -0.150 4.150 25 C -0.137 4.137 26 C -0.147 4.147 27 C -0.133 4.133 28 N -0.200 5.200 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.236 0.764 33 H 0.194 0.806 34 H 0.096 0.904 35 H 0.130 0.870 36 H 0.026 0.974 37 H 0.022 0.978 38 H 0.210 0.790 39 H 0.059 0.941 40 H 0.120 0.880 41 H 0.108 0.892 42 H 0.137 0.863 43 H 0.156 0.844 44 H 0.163 0.837 45 H 0.159 0.841 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 17.009 2.236 9.688 19.702 hybrid contribution -0.159 -0.122 -0.865 0.888 sum 16.850 2.114 8.823 19.137 Atomic orbital electron populations 1.20450 0.84812 1.04101 1.03696 1.23565 0.98803 0.83271 0.90075 1.68282 1.11633 1.30038 1.13346 1.24063 0.88650 0.99891 0.88376 1.23132 1.04364 0.92419 0.99791 1.21771 0.90489 0.95219 0.96743 1.18011 0.86135 0.83399 0.76789 1.90700 1.13426 1.86943 1.51196 1.47847 1.07603 1.05749 1.69211 1.22135 0.76902 1.04413 0.97868 1.20733 0.84209 0.96143 0.95049 1.42097 1.00175 1.88957 1.05419 1.19334 0.88942 1.41235 0.87261 0.92092 1.25253 0.97266 1.03833 0.98821 1.69763 1.08347 1.59191 1.23480 0.85447 0.77849 0.77782 0.80043 1.21120 1.22002 1.21007 1.20569 0.98148 0.84681 0.93655 1.20198 0.95768 0.99427 0.96348 1.21293 0.96390 0.98859 0.96532 1.21427 1.00788 0.99129 0.93629 1.21508 0.94530 0.96995 1.00713 1.21449 0.97400 1.00354 0.95517 1.21309 0.99346 0.98113 0.94486 1.68833 1.08426 1.29989 1.12757 0.90774 0.90450 0.88412 0.76362 0.80630 0.90403 0.86963 0.97391 0.97834 0.79005 0.94054 0.87981 0.89248 0.86313 0.84379 0.83700 0.84054 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.36 10.31 71.23 0.73 -1.63 16 2 C 0.31 9.97 7.64 138.78 1.06 11.03 16 3 N -0.52 -14.42 10.32 -187.87 -1.94 -16.36 16 4 C 0.16 3.30 11.31 84.78 0.96 4.26 16 5 C -0.17 -4.09 9.72 22.71 0.22 -3.87 16 6 C 0.10 3.17 6.53 41.98 0.27 3.45 16 7 C 0.57 17.88 7.58 86.97 0.66 18.54 16 8 O -0.54 -17.70 14.83 -3.62 -0.05 -17.75 16 9 N -0.57 -17.20 2.48 -828.87 -2.06 -19.26 16 10 C 0.11 3.63 5.08 86.38 0.44 4.06 16 11 C 0.17 6.74 5.94 86.38 0.51 7.25 16 12 N -0.72 -34.94 5.60 -343.45 -1.92 -36.87 16 13 C -0.24 -12.75 9.99 84.03 0.84 -11.91 16 14 H 0.06 3.30 7.83 -2.91 -0.02 3.28 16 15 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 16 N -0.96 -55.30 13.06 21.65 0.28 -55.02 16 17 Si 0.96 45.17 29.55 68.60 2.03 47.20 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 C 0.15 3.89 5.49 85.63 0.47 4.36 16 22 C -0.12 -2.86 5.43 -19.86 -0.11 -2.97 16 23 C -0.11 -2.71 9.51 22.27 0.21 -2.50 16 24 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 25 C -0.12 -2.16 10.05 22.27 0.22 -1.94 16 26 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 27 C -0.11 -2.56 9.68 22.27 0.22 -2.35 16 28 N -0.48 -16.06 4.50 -177.09 -0.80 -16.86 16 29 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.10 2.68 8.14 -2.38 -0.02 2.66 16 32 H 0.22 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.18 3.32 7.75 -2.91 -0.02 3.30 16 34 H 0.08 2.44 8.02 -2.39 -0.02 2.42 16 35 H 0.11 3.94 5.23 -2.49 -0.01 3.92 16 36 H 0.01 0.36 6.80 -2.38 -0.02 0.34 16 37 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.38 19.07 7.67 -92.71 -0.71 18.36 16 39 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 40 H 0.10 2.40 7.95 -2.39 -0.02 2.38 16 41 H 0.09 2.32 7.48 -2.39 -0.02 2.30 16 42 H 0.12 3.06 7.01 -2.91 -0.02 3.04 16 43 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 44 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 45 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 46 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -66.06 388.44 3.46 -62.60 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.29 Total: 34.00 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 7.63 Total: 18.31 kcal Atomic # 7 Polarization: -137.92 SS G_CDS: -6.44 Total: -144.35 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.05 Total: -17.75 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -66.06 3.46 -62.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733571410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.524 kcal (2) G-P(sol) polarization free energy of solvation -66.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds