Wall clock time and date at job start Sat Apr 11 2020 06:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38573 * 119.96412 * 2 1 4 4 C 1.38825 * 118.06772 * 179.97438 * 3 2 1 5 5 C 1.39712 * 117.89759 * 359.97438 * 4 3 2 6 6 C 1.48158 * 120.17825 * 179.97438 * 5 4 3 7 7 O 1.21517 * 120.00472 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99939 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00335 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47322 * 180.02562 * 9 8 6 11 11 C 1.38255 * 119.99391 * 257.27974 * 10 9 8 12 12 C 1.38214 * 119.99450 * 179.74316 * 11 10 9 13 13 C 1.38254 * 120.00240 * 0.54788 * 12 11 10 14 14 C 1.38216 * 119.99818 * 359.70988 * 13 12 11 15 15 C 1.38203 * 120.00166 * 77.55260 * 10 9 8 16 16 C 1.50708 * 120.00034 * 0.02562 * 15 10 9 17 17 N 1.46503 * 109.46982 * 181.53299 * 16 15 10 18 18 C 1.46491 * 120.00166 * 268.98877 * 17 16 15 19 19 C 1.36940 * 119.99967 * 88.98692 * 17 16 15 20 20 H 1.08004 * 119.99717 * 22.46523 * 19 17 16 21 21 C 1.38811 * 120.00372 * 202.46366 * 19 17 16 22 22 N 1.31617 * 119.99526 * 13.57161 * 21 19 17 23 23 Si 1.86799 * 120.00113 * 193.56957 * 21 19 17 24 24 H 1.48502 * 109.46976 * 90.00202 * 23 21 19 25 25 H 1.48500 * 109.46820 * 209.99686 * 23 21 19 26 26 H 1.48496 * 109.47149 * 329.99834 * 23 21 19 27 27 N 1.32778 * 119.63701 * 0.02562 * 5 4 3 28 28 N 1.28347 * 122.02916 * 0.02562 * 27 5 4 29 29 H 1.08997 * 109.47466 * 89.99875 * 1 2 3 30 30 H 1.09003 * 109.46563 * 209.99823 * 1 2 3 31 31 H 1.09003 * 109.46927 * 329.99169 * 1 2 3 32 32 H 1.08003 * 120.96742 * 359.70973 * 3 2 1 33 33 H 1.08000 * 121.04864 * 179.97438 * 4 3 2 34 34 H 0.97001 * 119.99712 * 0.02562 * 8 6 5 35 35 H 1.09008 * 109.46622 * 299.99985 * 9 8 6 36 36 H 1.08998 * 109.47354 * 59.99637 * 9 8 6 37 37 H 1.07998 * 120.00761 * 359.97438 * 11 10 9 38 38 H 1.08004 * 120.00156 * 180.27471 * 12 11 10 39 39 H 1.07994 * 120.00075 * 179.71973 * 13 12 11 40 40 H 1.07997 * 120.00261 * 179.97438 * 14 13 12 41 41 H 1.08997 * 109.47062 * 301.52904 * 16 15 10 42 42 H 1.08991 * 109.46817 * 61.53552 * 16 15 10 43 43 H 1.08997 * 109.47471 * 93.73069 * 18 17 16 44 44 H 1.09003 * 109.47215 * 213.72850 * 18 17 16 45 45 H 1.09005 * 109.47449 * 333.72842 * 18 17 16 46 46 H 0.96998 * 119.99800 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1546 0.0005 5 6 4.1991 -0.1011 0.0016 6 6 5.6767 -0.2091 0.0017 7 8 6.3594 0.7962 0.0012 8 7 6.2638 -1.4223 0.0022 9 6 7.7249 -1.5291 0.0017 10 6 8.1223 -2.9828 0.0018 11 6 8.5594 -3.5797 1.1697 12 6 8.9189 -4.9143 1.1710 13 6 8.8522 -5.6493 0.0020 14 6 8.4203 -5.0511 -1.1668 15 6 8.0553 -3.7176 -1.1668 16 6 7.5853 -3.0650 -2.4414 17 7 7.5695 -4.0560 -3.5203 18 6 8.7530 -4.2391 -4.3641 19 6 6.4485 -4.8112 -3.7400 20 1 5.4859 -4.4609 -3.3978 21 6 6.5493 -6.0267 -4.4026 22 7 7.7289 -6.5820 -4.5830 23 14 5.0109 -6.8745 -5.0381 24 1 4.7347 -6.4237 -6.4258 25 1 5.2159 -8.3453 -5.0271 26 1 3.8593 -6.5286 -4.1668 27 7 3.4497 -1.1972 0.0016 28 7 2.1673 -1.1450 0.0001 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.6744 2.1445 -0.0047 33 1 4.1739 2.0609 0.0002 34 1 5.7189 -2.2248 0.0021 35 1 8.1243 -1.0436 -0.8889 36 1 8.1251 -1.0425 0.8911 37 1 8.6163 -3.0043 2.0818 38 1 9.2561 -5.3818 2.0843 39 1 9.1374 -6.6909 0.0020 40 1 8.3686 -5.6251 -2.0801 41 1 6.5802 -2.6687 -2.2974 42 1 8.2622 -2.2523 -2.7044 43 1 9.3668 -5.0437 -3.9594 44 1 8.4411 -4.4943 -5.3769 45 1 9.3315 -3.3155 -4.3839 46 1 7.7995 -7.4312 -5.0463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733676266.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:38 Heat of formation + Delta-G solvation = 73.813944 kcal Electronic energy + Delta-G solvation = -28951.237209 eV Core-core repulsion = 25035.244339 eV Total energy + Delta-G solvation = -3915.992870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.42814 -39.69131 -38.73219 -35.53666 -34.97497 -34.29501 -33.32143 -31.93216 -31.03720 -29.84843 -28.87111 -26.49696 -25.90912 -25.49235 -25.00716 -23.42016 -22.11573 -21.17249 -20.80730 -19.93887 -18.50905 -17.69937 -16.71288 -16.14152 -15.89308 -15.85344 -15.70826 -15.27370 -14.92122 -14.64952 -14.33908 -14.08433 -13.70704 -13.59041 -13.47870 -13.26015 -13.12663 -12.93689 -12.75411 -12.51222 -12.36456 -12.10772 -11.72341 -11.54781 -11.27564 -10.87874 -10.73816 -10.57453 -10.50224 -10.44764 -10.26668 -10.17934 -10.02145 -9.99266 -9.98501 -9.83635 -9.04121 -8.55205 -8.26978 -7.97551 -6.81766 -5.74938 -3.20781 0.20735 0.48767 1.74628 2.05281 2.50683 3.05447 3.39712 3.44622 3.46622 3.48448 3.62243 4.06504 4.23727 4.34081 4.47803 4.50851 4.64532 4.73057 4.98428 5.06712 5.15077 5.27387 5.35645 5.37042 5.48561 5.49705 5.57961 5.62387 5.65781 5.78901 5.85177 5.86934 6.05910 6.29391 6.33108 6.41069 6.50341 6.60841 6.75258 6.79725 6.95911 7.24579 7.37017 7.39694 7.50503 7.70651 7.74914 7.84265 8.04117 8.34775 8.37987 9.22561 9.83902 10.32901 11.30119 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008736 B = 0.003723 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.185345 B = 7519.026566 C = 9478.751111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.082 3.918 3 C -0.125 4.125 4 C -0.062 4.062 5 C 0.019 3.981 6 C 0.575 3.425 7 O -0.535 6.535 8 N -0.695 5.695 9 C 0.167 3.833 10 C -0.130 4.130 11 C -0.113 4.113 12 C -0.141 4.141 13 C -0.119 4.119 14 C -0.085 4.085 15 C -0.072 4.072 16 C 0.180 3.820 17 N -0.598 5.598 18 C 0.160 3.840 19 C -0.251 4.251 20 H 0.068 0.932 21 C 0.005 3.995 22 N -0.908 5.908 23 Si 0.901 3.099 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.279 1.279 27 N -0.199 5.199 28 N -0.238 5.238 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.416 0.584 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.162 0.838 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.030 0.970 44 H 0.045 0.955 45 H -0.003 1.003 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.487 13.915 11.814 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.061 4.061 3 C -0.154 4.154 4 C -0.091 4.091 5 C -0.127 4.127 6 C 0.358 3.642 7 O -0.412 6.412 8 N -0.345 5.345 9 C 0.044 3.956 10 C -0.131 4.131 11 C -0.132 4.132 12 C -0.159 4.159 13 C -0.138 4.138 14 C -0.103 4.103 15 C -0.076 4.076 16 C 0.052 3.948 17 N -0.320 5.320 18 C 0.016 3.984 19 C -0.381 4.381 20 H 0.086 0.914 21 C -0.193 4.193 22 N -0.553 5.553 23 Si 0.732 3.268 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.204 1.204 27 N -0.045 5.045 28 N -0.083 5.083 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.174 0.826 33 H 0.180 0.820 34 H 0.253 0.747 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.180 0.820 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.064 0.936 45 H 0.016 0.984 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.957 12.818 11.689 18.691 hybrid contribution -0.931 0.462 -0.280 1.076 sum -7.888 13.280 11.410 19.203 Atomic orbital electron populations 1.20748 0.87055 1.04326 1.04047 1.23139 0.99444 0.90528 0.93019 1.22307 0.94251 1.00119 0.98748 1.22437 0.95042 0.99173 0.92483 1.22864 0.96543 0.92071 1.01242 1.17532 0.85128 0.84128 0.77414 1.90787 1.63527 1.36087 1.50777 1.46011 1.08230 1.08298 1.71979 1.20209 0.78917 0.93693 1.02747 1.19580 1.04797 0.94532 0.94196 1.20808 1.00637 0.95028 0.96689 1.20966 1.02598 0.94393 0.97917 1.21289 0.99717 0.99553 0.93199 1.21785 0.94076 0.94873 0.99539 1.21269 0.95587 0.94839 0.95879 1.19935 0.98454 0.91401 0.84990 1.43945 1.13823 1.42502 1.31732 1.20851 0.87706 0.94743 0.95124 1.19199 0.86397 0.98557 1.33940 0.91390 1.24939 0.96498 0.96104 1.01776 1.70028 1.21677 1.18020 1.45586 0.86292 0.82929 0.78604 0.79023 1.21601 1.21767 1.20413 1.73282 0.99761 1.26016 1.05464 1.73154 1.00900 1.24471 1.09774 0.89355 0.89568 0.90023 0.82565 0.81960 0.74702 0.90219 0.90810 0.87040 0.87100 0.86870 0.82048 0.92335 0.92950 0.95159 0.93617 0.98426 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 10.19 36.01 0.37 -0.24 16 2 C 0.08 0.79 6.87 -82.32 -0.57 0.23 16 3 C -0.13 -1.00 9.86 -39.24 -0.39 -1.39 16 4 C -0.06 -0.64 9.73 -38.81 -0.38 -1.01 16 5 C 0.02 0.26 6.83 -82.83 -0.57 -0.31 16 6 C 0.58 8.50 7.82 -12.18 -0.10 8.40 16 7 O -0.54 -8.76 16.39 5.35 0.09 -8.67 16 8 N -0.69 -10.19 5.07 -62.33 -0.32 -10.50 16 9 C 0.17 2.41 5.17 -5.20 -0.03 2.38 16 10 C -0.13 -2.10 5.25 -104.63 -0.55 -2.65 16 11 C -0.11 -1.69 9.67 -39.58 -0.38 -2.07 16 12 C -0.14 -2.17 10.05 -39.58 -0.40 -2.57 16 13 C -0.12 -2.13 10.05 -39.58 -0.40 -2.53 16 14 C -0.08 -1.77 9.16 -39.58 -0.36 -2.13 16 15 C -0.07 -1.39 5.88 -104.62 -0.61 -2.01 16 16 C 0.18 3.69 4.95 -5.19 -0.03 3.67 16 17 N -0.60 -14.55 1.74 -182.50 -0.32 -14.87 16 18 C 0.16 3.86 8.72 59.84 0.52 4.38 16 19 C -0.25 -6.72 9.02 -15.06 -0.14 -6.85 16 20 H 0.07 1.84 7.86 -52.48 -0.41 1.42 16 21 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 22 N -0.91 -25.29 10.72 55.49 0.59 -24.69 16 23 Si 0.90 21.78 29.58 -169.99 -5.03 16.75 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 N -0.20 -2.95 10.75 33.32 0.36 -2.59 16 28 N -0.24 -3.26 11.43 33.63 0.38 -2.87 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.27 8.09 -51.93 -0.42 -0.15 16 32 H 0.16 0.62 8.06 -52.48 -0.42 0.20 16 33 H 0.16 1.39 7.72 -52.49 -0.41 0.98 16 34 H 0.42 6.33 7.82 -40.82 -0.32 6.01 16 35 H 0.08 1.19 7.22 -51.92 -0.37 0.82 16 36 H 0.07 0.97 7.98 -51.93 -0.41 0.56 16 37 H 0.11 1.39 8.02 -52.49 -0.42 0.97 16 38 H 0.11 1.42 8.06 -52.48 -0.42 0.99 16 39 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.16 4.01 5.81 -52.49 -0.30 3.70 16 41 H 0.06 1.21 7.55 -51.93 -0.39 0.81 16 42 H 0.05 1.01 7.36 -51.93 -0.38 0.63 16 43 H 0.03 0.77 6.89 -51.93 -0.36 0.41 16 44 H 0.05 1.18 7.23 -51.93 -0.38 0.81 16 45 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 46 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -31.29 387.41 -8.72 -40.00 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.24 Total: 6.26 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -4.08 Total: -4.66 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.70 Total: -55.52 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.29 -8.72 -40.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733676266.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.817 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds