Wall clock time and date at job start Sat Apr 11 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30367 * 125.96866 * 2 1 4 4 N 1.39921 * 109.02190 * 179.74846 * 3 2 1 5 5 C 1.46506 * 125.74221 * 180.25308 * 4 3 2 6 6 C 1.34413 * 108.51228 * 0.39020 * 4 3 2 7 7 F 1.35096 * 126.34171 * 179.87637 * 6 4 3 8 8 C 1.38492 * 107.31219 * 359.62415 * 6 4 3 9 9 C 1.47176 * 126.45903 * 180.25887 * 8 6 4 10 10 O 1.21639 * 119.99619 * 89.97010 * 9 8 6 11 11 N 1.34776 * 119.99694 * 269.97273 * 9 8 6 12 12 C 1.46506 * 119.99580 * 174.69665 * 11 9 8 13 13 C 1.52997 * 109.54156 * 304.21933 * 12 11 9 14 14 N 1.46495 * 109.47424 * 305.57760 * 13 12 11 15 15 C 1.36937 * 120.00156 * 175.02222 * 14 13 12 16 16 H 1.08001 * 120.00436 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00269 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99519 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00330 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47284 * 90.00123 * 19 17 15 21 21 H 1.48503 * 109.47192 * 210.00096 * 19 17 15 22 22 H 1.48499 * 109.47223 * 329.99764 * 19 17 15 23 23 C 1.53174 * 109.54254 * 184.04389 * 12 11 9 24 24 C 1.53285 * 109.06110 * 297.03066 * 23 12 11 25 25 O 1.42907 * 109.45938 * 302.44388 * 24 23 12 26 26 C 1.42900 * 114.09716 * 61.15983 * 25 24 23 27 27 C 1.53095 * 109.41740 * 298.84120 * 26 25 24 28 28 H 1.09003 * 109.46853 * 270.01983 * 1 2 3 29 29 H 1.08998 * 109.47009 * 30.01696 * 1 2 3 30 30 H 1.08998 * 109.47170 * 150.02011 * 1 2 3 31 31 H 1.09005 * 109.46598 * 270.16613 * 5 4 3 32 32 H 1.09003 * 109.47097 * 30.16831 * 5 4 3 33 33 H 1.08999 * 109.47166 * 150.16691 * 5 4 3 34 34 H 0.96995 * 120.00317 * 354.69643 * 11 9 8 35 35 H 1.09005 * 109.47404 * 65.58006 * 13 12 11 36 36 H 1.08998 * 109.47347 * 185.57978 * 13 12 11 37 37 H 0.96997 * 119.99876 * 355.03000 * 14 13 12 38 38 H 0.97005 * 119.99514 * 180.02562 * 18 17 15 39 39 H 1.08997 * 109.52411 * 57.01502 * 23 12 11 40 40 H 1.08998 * 109.52486 * 177.21063 * 23 12 11 41 41 H 1.09007 * 109.45699 * 182.44988 * 24 23 12 42 42 H 1.09000 * 109.46821 * 62.44989 * 24 23 12 43 43 H 1.08998 * 109.48202 * 178.85939 * 26 25 24 44 44 H 1.08997 * 109.48884 * 58.82824 * 26 25 24 45 45 H 1.09000 * 109.51973 * 297.70779 * 27 26 25 46 46 H 1.08993 * 109.57257 * 177.54304 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0551 0.0000 4 7 3.6112 0.6473 0.0058 5 6 4.7764 1.5353 0.0129 6 6 3.6479 -0.6963 0.0007 7 9 4.7576 -1.4669 0.0015 8 6 2.3375 -1.1445 0.0004 9 6 1.8930 -2.5475 0.0009 10 8 1.7094 -3.1268 1.0546 11 7 1.6894 -3.1903 -1.1661 12 6 1.3602 -4.6179 -1.1682 13 6 2.4419 -5.3937 -0.4140 14 7 3.7539 -5.0859 -0.9884 15 6 4.8893 -5.5869 -0.4096 16 1 4.8176 -6.2092 0.4702 17 6 6.1326 -5.2948 -0.9536 18 7 6.2201 -4.5360 -2.0255 19 14 7.6814 -5.9787 -0.1644 20 1 8.0036 -7.2969 -0.7674 21 1 8.8095 -5.0405 -0.3936 22 1 7.4625 -6.1422 1.2952 23 6 1.2798 -5.1230 -2.6120 24 6 0.1412 -4.3943 -3.3347 25 8 -1.0840 -4.6097 -2.6313 26 6 -1.0816 -4.1154 -1.2905 27 6 0.0057 -4.8323 -0.4857 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5135 31 1 5.0685 1.7596 -1.0131 32 1 4.5243 2.4614 0.5297 33 1 5.6032 1.0457 0.5273 34 1 1.7610 -2.7078 -2.0045 35 1 2.4290 -5.1061 0.6373 36 1 2.2492 -6.4630 -0.5006 37 1 3.8183 -4.5273 -1.7787 38 1 7.0889 -4.3322 -2.4058 39 1 2.2231 -4.9239 -3.1206 40 1 1.0838 -6.1952 -2.6125 41 1 0.0500 -4.7801 -4.3502 42 1 0.3576 -3.3266 -3.3695 43 1 -2.0536 -4.3002 -0.8332 44 1 -0.8812 -3.0441 -1.2982 45 1 -0.2160 -5.8987 -0.4433 46 1 0.0390 -4.4266 0.5253 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733834209.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:45 Heat of formation + Delta-G solvation = -26.200185 kcal Electronic energy + Delta-G solvation = -32118.104054 eV Core-core repulsion = 27767.005021 eV Total energy + Delta-G solvation = -4351.099032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.88303 -41.31313 -40.23679 -38.07386 -35.64928 -34.17226 -33.58075 -31.74656 -31.01578 -30.40267 -30.12455 -29.35509 -26.55142 -26.02184 -23.71671 -23.45037 -22.61927 -21.42521 -20.67729 -20.19207 -18.93583 -17.91812 -17.18114 -16.79890 -16.59055 -15.96225 -15.83767 -15.75700 -15.38574 -14.65679 -14.47360 -14.42680 -14.27465 -14.04288 -13.68527 -13.55051 -13.39297 -13.25454 -13.04993 -12.71211 -12.65252 -12.52333 -12.33333 -12.31071 -12.13290 -11.75931 -11.49449 -11.13938 -10.87506 -10.84893 -10.78660 -10.46183 -10.28853 -10.03681 -9.67120 -9.52000 -9.31530 -9.28259 -8.76957 -8.58907 -8.51226 -6.81107 -5.70367 -2.95956 1.49671 1.97511 2.30568 2.94106 3.46158 3.51561 3.53734 3.62253 3.98235 4.00194 4.42440 4.63802 4.79485 4.84291 4.97260 5.02250 5.06442 5.12460 5.15859 5.20653 5.24382 5.34610 5.41057 5.42762 5.50813 5.65264 5.67957 5.71351 5.79026 5.83009 5.98436 6.09786 6.14464 6.28493 6.33643 6.36814 6.51376 6.59336 6.77559 6.91689 7.11034 7.29413 7.39057 7.78058 7.92377 8.48692 8.66344 9.60591 10.18029 10.54062 11.52627 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.007815 B = 0.006297 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3581.908028 B = 4445.747654 C = 7206.743643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.127 3.873 3 N -0.281 5.281 4 N -0.379 5.379 5 C 0.094 3.906 6 C 0.309 3.691 7 F -0.066 7.066 8 C -0.296 4.296 9 C 0.613 3.387 10 O -0.523 6.523 11 N -0.704 5.704 12 C 0.174 3.826 13 C 0.141 3.859 14 N -0.723 5.723 15 C -0.226 4.226 16 H 0.067 0.933 17 C -0.014 4.014 18 N -0.934 5.934 19 Si 0.902 3.098 20 H -0.291 1.291 21 H -0.293 1.293 22 H -0.283 1.283 23 C -0.154 4.154 24 C 0.061 3.939 25 O -0.385 6.385 26 C 0.066 3.934 27 C -0.164 4.164 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.395 0.605 35 H 0.050 0.950 36 H 0.021 0.979 37 H 0.381 0.619 38 H 0.251 0.749 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.046 0.954 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.078 0.922 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.485 10.993 -0.641 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.040 4.040 3 N -0.104 5.104 4 N -0.165 5.165 5 C -0.046 4.046 6 C 0.162 3.838 7 F -0.045 7.045 8 C -0.312 4.312 9 C 0.397 3.603 10 O -0.398 6.398 11 N -0.355 5.355 12 C 0.088 3.912 13 C 0.013 3.987 14 N -0.367 5.367 15 C -0.358 4.358 16 H 0.085 0.915 17 C -0.209 4.209 18 N -0.584 5.584 19 Si 0.734 3.266 20 H -0.219 1.219 21 H -0.220 1.220 22 H -0.209 1.209 23 C -0.192 4.192 24 C -0.016 4.016 25 O -0.304 6.304 26 C -0.011 4.011 27 C -0.203 4.203 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.229 0.771 35 H 0.067 0.933 36 H 0.038 0.962 37 H 0.215 0.785 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.065 0.935 43 H 0.107 0.893 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.419 11.692 0.168 17.058 hybrid contribution 2.046 -0.778 -0.141 2.193 sum -10.373 10.914 0.026 15.057 Atomic orbital electron populations 1.20271 0.85568 1.03657 1.03805 1.22114 0.96907 0.88309 0.96697 1.77188 0.84366 1.21353 1.27460 1.48619 1.07021 1.02867 1.57957 1.22036 0.83893 0.94443 1.04274 1.17973 0.84228 0.81561 1.00003 1.91863 1.48732 1.70833 1.93054 1.19717 0.90421 0.95711 1.25323 1.16760 0.76147 0.83566 0.83796 1.90722 1.50418 1.67147 1.31498 1.45917 1.71470 1.09960 1.08171 1.20604 0.94661 0.80236 0.95673 1.21087 0.85154 0.95229 0.97264 1.42180 0.99736 1.61199 1.33593 1.19202 0.84911 1.23791 1.07891 0.91471 1.24628 0.97209 1.00802 0.98256 1.69650 1.23146 1.42099 1.23481 0.86253 0.83606 0.78080 0.78709 1.21889 1.21983 1.20901 1.22468 0.99990 1.01898 0.94886 1.22634 0.84329 0.98823 0.95791 1.87894 1.35137 1.81781 1.25615 1.22522 0.99093 0.97065 0.82389 1.22561 0.94061 1.02132 1.01502 0.89644 0.90142 0.90223 0.89902 0.88450 0.88955 0.77070 0.93253 0.96156 0.78506 0.93885 0.89200 0.89483 0.88852 0.93537 0.89255 0.93437 0.90379 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.28 36.01 0.37 -0.37 16 2 C 0.13 1.77 7.26 -82.01 -0.60 1.18 16 3 N -0.28 -4.03 12.49 33.91 0.42 -3.60 16 4 N -0.38 -5.46 3.98 -67.94 -0.27 -5.73 16 5 C 0.09 0.92 11.43 59.85 0.68 1.60 16 6 C 0.31 5.40 8.70 -16.33 -0.14 5.26 16 7 F -0.07 -1.36 17.31 2.25 0.04 -1.32 16 8 C -0.30 -4.98 5.89 -104.97 -0.62 -5.59 16 9 C 0.61 11.08 6.76 -12.63 -0.09 11.00 16 10 O -0.52 -10.99 13.41 5.24 0.07 -10.92 16 11 N -0.70 -11.26 3.75 -48.57 -0.18 -11.44 16 12 C 0.17 2.84 0.32 -131.63 -0.04 2.80 16 13 C 0.14 2.98 4.79 -4.05 -0.02 2.96 16 14 N -0.72 -18.15 5.21 -59.91 -0.31 -18.46 16 15 C -0.23 -6.44 9.99 -15.06 -0.15 -6.59 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 19 Si 0.90 22.90 29.55 -169.99 -5.02 17.87 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 23 C -0.15 -2.26 4.84 -26.49 -0.13 -2.38 16 24 C 0.06 0.74 6.67 37.31 0.25 0.99 16 25 O -0.39 -5.08 10.77 -35.23 -0.38 -5.46 16 26 C 0.07 0.80 6.68 37.21 0.25 1.05 16 27 C -0.16 -2.34 4.82 -26.59 -0.13 -2.47 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.74 7.82 -51.93 -0.41 0.33 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.40 5.67 7.39 -40.82 -0.30 5.37 16 35 H 0.05 1.17 6.24 -51.93 -0.32 0.85 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.38 9.82 6.51 -40.82 -0.27 9.55 16 38 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.09 1.46 7.22 -51.93 -0.37 1.09 16 40 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.52 7.01 -51.93 -0.36 0.15 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.55 7.56 -51.93 -0.39 0.15 16 45 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.09 1.49 6.26 -51.93 -0.33 1.17 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -34.68 378.35 -6.19 -40.87 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -6.53 Total: 10.61 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -0.45 Total: 8.93 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: 0.38 Total: -66.28 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.31 Total: -16.38 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.68 -6.19 -40.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733834209.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.667 kcal (2) G-P(sol) polarization free energy of solvation -34.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds