Wall clock time and date at job start Sat Apr 11 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30367 * 125.96866 * 2 1 4 4 N 1.39921 * 109.02190 * 179.74846 * 3 2 1 5 5 C 1.46506 * 125.74221 * 180.25308 * 4 3 2 6 6 C 1.34413 * 108.51228 * 0.39020 * 4 3 2 7 7 F 1.35096 * 126.34171 * 179.87637 * 6 4 3 8 8 C 1.38492 * 107.31219 * 359.62415 * 6 4 3 9 9 C 1.47176 * 126.45903 * 180.25887 * 8 6 4 10 10 O 1.21639 * 119.99619 * 89.97010 * 9 8 6 11 11 N 1.34776 * 119.99694 * 269.97273 * 9 8 6 12 12 C 1.46506 * 119.99580 * 174.69665 * 11 9 8 13 13 C 1.52997 * 109.54156 * 304.21933 * 12 11 9 14 14 N 1.46495 * 109.47424 * 305.57760 * 13 12 11 15 15 C 1.36937 * 120.00156 * 175.02222 * 14 13 12 16 16 H 1.08001 * 120.00436 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00269 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99519 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00330 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47284 * 90.00123 * 19 17 15 21 21 H 1.48503 * 109.47192 * 210.00096 * 19 17 15 22 22 H 1.48499 * 109.47223 * 329.99764 * 19 17 15 23 23 C 1.53174 * 109.54254 * 184.04389 * 12 11 9 24 24 C 1.53285 * 109.06110 * 297.03066 * 23 12 11 25 25 O 1.42907 * 109.45938 * 302.44388 * 24 23 12 26 26 C 1.42900 * 114.09716 * 61.15983 * 25 24 23 27 27 C 1.53095 * 109.41740 * 298.84120 * 26 25 24 28 28 H 1.09003 * 109.46853 * 270.01983 * 1 2 3 29 29 H 1.08998 * 109.47009 * 30.01696 * 1 2 3 30 30 H 1.08998 * 109.47170 * 150.02011 * 1 2 3 31 31 H 1.09005 * 109.46598 * 270.16613 * 5 4 3 32 32 H 1.09003 * 109.47097 * 30.16831 * 5 4 3 33 33 H 1.08999 * 109.47166 * 150.16691 * 5 4 3 34 34 H 0.96995 * 120.00317 * 354.69643 * 11 9 8 35 35 H 1.09005 * 109.47404 * 65.58006 * 13 12 11 36 36 H 1.08998 * 109.47347 * 185.57978 * 13 12 11 37 37 H 0.96997 * 119.99876 * 355.03000 * 14 13 12 38 38 H 0.97005 * 119.99514 * 180.02562 * 18 17 15 39 39 H 1.08997 * 109.52411 * 57.01502 * 23 12 11 40 40 H 1.08998 * 109.52486 * 177.21063 * 23 12 11 41 41 H 1.09007 * 109.45699 * 182.44988 * 24 23 12 42 42 H 1.09000 * 109.46821 * 62.44989 * 24 23 12 43 43 H 1.08998 * 109.48202 * 178.85939 * 26 25 24 44 44 H 1.08997 * 109.48884 * 58.82824 * 26 25 24 45 45 H 1.09000 * 109.51973 * 297.70779 * 27 26 25 46 46 H 1.08993 * 109.57257 * 177.54304 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0551 0.0000 4 7 3.6112 0.6473 0.0058 5 6 4.7764 1.5353 0.0129 6 6 3.6479 -0.6963 0.0007 7 9 4.7576 -1.4669 0.0015 8 6 2.3375 -1.1445 0.0004 9 6 1.8930 -2.5475 0.0009 10 8 1.7094 -3.1268 1.0546 11 7 1.6894 -3.1903 -1.1661 12 6 1.3602 -4.6179 -1.1682 13 6 2.4419 -5.3937 -0.4140 14 7 3.7539 -5.0859 -0.9884 15 6 4.8893 -5.5869 -0.4096 16 1 4.8176 -6.2092 0.4702 17 6 6.1326 -5.2948 -0.9536 18 7 6.2201 -4.5360 -2.0255 19 14 7.6814 -5.9787 -0.1644 20 1 8.0036 -7.2969 -0.7674 21 1 8.8095 -5.0405 -0.3936 22 1 7.4625 -6.1422 1.2952 23 6 1.2798 -5.1230 -2.6120 24 6 0.1412 -4.3943 -3.3347 25 8 -1.0840 -4.6097 -2.6313 26 6 -1.0816 -4.1154 -1.2905 27 6 0.0057 -4.8323 -0.4857 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5135 31 1 5.0685 1.7596 -1.0131 32 1 4.5243 2.4614 0.5297 33 1 5.6032 1.0457 0.5273 34 1 1.7610 -2.7078 -2.0045 35 1 2.4290 -5.1061 0.6373 36 1 2.2492 -6.4630 -0.5006 37 1 3.8183 -4.5273 -1.7787 38 1 7.0889 -4.3322 -2.4058 39 1 2.2231 -4.9239 -3.1206 40 1 1.0838 -6.1952 -2.6125 41 1 0.0500 -4.7801 -4.3502 42 1 0.3576 -3.3266 -3.3695 43 1 -2.0536 -4.3002 -0.8332 44 1 -0.8812 -3.0441 -1.2982 45 1 -0.2160 -5.8987 -0.4433 46 1 0.0390 -4.4266 0.5253 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733834209.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:45 Heat of formation + Delta-G solvation = -51.543884 kcal Electronic energy + Delta-G solvation = -32119.203039 eV Core-core repulsion = 27767.005021 eV Total energy + Delta-G solvation = -4352.198018 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.34671 -42.50326 -41.51099 -39.32985 -37.16864 -35.43478 -35.20365 -33.27772 -32.32583 -31.99333 -31.20942 -30.36556 -28.16852 -27.08161 -25.41751 -24.66139 -23.92307 -22.94665 -21.93087 -21.36287 -20.31670 -19.24443 -19.17904 -18.04464 -17.83520 -17.18027 -17.03260 -16.94191 -16.82007 -16.29998 -15.92868 -15.71084 -15.67520 -15.39213 -15.12676 -14.84652 -14.68591 -14.48559 -14.27024 -14.17002 -13.80512 -13.68263 -13.59009 -13.28706 -13.20669 -13.01849 -13.00951 -12.80627 -12.78254 -12.27152 -12.12572 -12.02066 -11.94561 -11.63603 -11.35181 -11.01331 -10.73541 -10.50568 -10.39154 -9.90987 -9.84451 -8.92776 -7.93343 -5.18625 0.23837 0.88727 1.16033 1.42544 1.43281 1.51585 1.53846 2.29512 2.54826 2.85409 3.01699 3.32057 3.39748 3.58664 3.77825 3.80793 3.88176 3.95688 4.06517 4.19784 4.22472 4.25889 4.29668 4.32045 4.48702 4.52461 4.68533 4.74509 4.78940 4.80624 4.86057 4.89582 4.90887 4.91277 5.10742 5.14387 5.18589 5.24953 5.36153 5.47898 5.61627 5.63965 6.25817 6.28441 6.30056 6.57867 7.27540 7.36614 8.10052 8.38698 9.29061 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.007815 B = 0.006297 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3581.908028 B = 4445.747654 C = 7206.743643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.132 3.868 3 N -0.279 5.279 4 N -0.371 5.371 5 C 0.082 3.918 6 C 0.280 3.720 7 F -0.095 7.095 8 C -0.311 4.311 9 C 0.613 3.387 10 O -0.559 6.559 11 N -0.692 5.692 12 C 0.179 3.821 13 C 0.142 3.858 14 N -0.725 5.725 15 C -0.240 4.240 16 H 0.059 0.941 17 C -0.062 4.062 18 N -0.957 5.957 19 Si 0.961 3.039 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.281 1.281 23 C -0.148 4.148 24 C 0.066 3.934 25 O -0.390 6.390 26 C 0.071 3.929 27 C -0.157 4.157 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.404 0.596 35 H 0.022 0.978 36 H 0.020 0.980 37 H 0.377 0.623 38 H 0.249 0.751 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.061 0.939 43 H 0.113 0.887 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.028 12.206 -1.376 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.034 4.034 3 N -0.102 5.102 4 N -0.156 5.156 5 C -0.057 4.057 6 C 0.132 3.868 7 F -0.074 7.074 8 C -0.328 4.328 9 C 0.398 3.602 10 O -0.437 6.437 11 N -0.343 5.343 12 C 0.093 3.907 13 C 0.014 3.986 14 N -0.368 5.368 15 C -0.372 4.372 16 H 0.077 0.923 17 C -0.255 4.255 18 N -0.607 5.607 19 Si 0.791 3.209 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.206 1.206 23 C -0.186 4.186 24 C -0.010 4.010 25 O -0.309 6.309 26 C -0.006 4.006 27 C -0.196 4.196 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.141 0.859 33 H 0.113 0.887 34 H 0.240 0.760 35 H 0.040 0.960 36 H 0.038 0.962 37 H 0.210 0.790 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.132 0.868 42 H 0.079 0.921 43 H 0.131 0.869 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.979 12.923 -0.586 19.046 hybrid contribution 2.529 -1.144 0.132 2.779 sum -11.451 11.779 -0.455 16.434 Atomic orbital electron populations 1.20470 0.82618 1.05253 1.04917 1.22669 0.98533 0.86799 0.95426 1.77182 0.84320 1.21366 1.27329 1.48963 1.08072 1.02038 1.56507 1.22439 0.82720 0.94659 1.05832 1.18199 0.83699 0.82863 1.02070 1.91775 1.50134 1.71903 1.93577 1.19842 0.90926 0.95840 1.26157 1.17001 0.75493 0.84090 0.83640 1.90704 1.52125 1.68097 1.32760 1.45831 1.70612 1.09736 1.08162 1.20521 0.93990 0.79731 0.96478 1.21133 0.85204 0.95901 0.96368 1.42204 1.00440 1.60834 1.33328 1.19447 0.86374 1.23685 1.07731 0.92259 1.25304 0.99731 1.01511 0.99000 1.69774 1.23458 1.43051 1.24440 0.85331 0.80156 0.77517 0.77923 1.21167 1.21911 1.20644 1.22399 1.00482 1.02147 0.93574 1.22681 0.82856 0.99349 0.96131 1.87905 1.35185 1.81952 1.25834 1.22583 0.99120 0.97158 0.81713 1.22495 0.93521 1.02660 1.00918 0.88653 0.87736 0.89399 0.88266 0.85872 0.88691 0.75968 0.95987 0.96247 0.79025 0.94192 0.91021 0.89709 0.86801 0.92120 0.86944 0.92438 0.90124 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.28 71.24 0.73 -0.55 16 2 C 0.13 3.52 7.26 43.56 0.32 3.83 16 3 N -0.28 -7.54 12.49 -46.64 -0.58 -8.13 16 4 N -0.37 -10.42 3.98 -368.85 -1.47 -11.89 16 5 C 0.08 1.51 11.43 127.77 1.46 2.97 16 6 C 0.28 9.97 8.70 84.36 0.73 10.70 16 7 F -0.09 -4.10 17.31 44.97 0.78 -3.32 16 8 C -0.31 -10.51 5.89 -20.09 -0.12 -10.63 16 9 C 0.61 22.47 6.76 86.59 0.59 23.06 16 10 O -0.56 -24.24 13.41 -4.16 -0.06 -24.30 16 11 N -0.69 -22.13 3.75 -425.83 -1.60 -23.73 16 12 C 0.18 5.83 0.32 3.72 0.00 5.84 16 13 C 0.14 6.20 4.79 86.38 0.41 6.61 16 14 N -0.72 -37.55 5.21 -343.46 -1.79 -39.34 16 15 C -0.24 -14.03 9.99 84.03 0.84 -13.19 16 16 H 0.06 3.48 7.83 -2.91 -0.02 3.46 16 17 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16 18 N -0.96 -57.77 13.06 21.65 0.28 -57.49 16 19 Si 0.96 47.70 29.55 68.60 2.03 49.72 16 20 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 22 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 23 C -0.15 -4.21 4.84 30.75 0.15 -4.06 16 24 C 0.07 1.44 6.67 72.08 0.48 1.92 16 25 O -0.39 -9.11 10.77 -148.98 -1.60 -10.71 16 26 C 0.07 1.53 6.68 72.01 0.48 2.01 16 27 C -0.16 -4.37 4.82 30.69 0.15 -4.23 16 28 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 1.38 7.82 -2.39 -0.02 1.36 16 31 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.40 11.37 7.39 -92.71 -0.68 10.69 16 35 H 0.02 1.10 6.24 -2.38 -0.01 1.09 16 36 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.38 19.99 6.51 -92.71 -0.60 19.38 16 38 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 39 H 0.07 2.33 7.22 -2.39 -0.02 2.31 16 40 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.06 1.17 7.01 -2.39 -0.02 1.15 16 43 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.06 1.15 7.56 -2.39 -0.02 1.13 16 45 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 46 H 0.08 2.51 6.26 -2.39 -0.01 2.49 16 Total: -1.00 -76.35 378.35 2.42 -73.93 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: -0.26 Total: 34.14 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 6.69 Total: 21.11 kcal Atomic # 7 Polarization: -135.42 SS G_CDS: -5.16 Total: -140.58 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -1.66 Total: -35.01 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.32 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.72 kcal Total: -76.35 2.42 -73.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733834209.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.384 kcal (2) G-P(sol) polarization free energy of solvation -76.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds