Wall clock time and date at job start Sat Apr 11 2020 06:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30829 * 125.90120 * 2 1 4 4 N 1.40087 * 108.20855 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.04101 * 179.97438 * 4 3 2 6 6 C 1.34946 * 107.92254 * 0.02562 * 4 3 2 7 7 C 1.35316 * 107.74870 * 359.97438 * 6 4 3 8 8 C 1.50703 * 126.04135 * 180.26489 * 7 6 4 9 9 N 1.46905 * 109.46964 * 259.69063 * 8 7 6 10 10 C 1.46899 * 110.99879 * 66.04424 * 9 8 7 11 11 C 1.46900 * 110.99923 * 190.00170 * 9 8 7 12 12 H 1.09001 * 109.46968 * 54.99658 * 11 9 8 13 13 C 1.53002 * 109.46714 * 295.00076 * 11 9 8 14 14 C 1.52994 * 109.47063 * 175.00028 * 11 9 8 15 15 N 1.46499 * 109.47206 * 304.99715 * 14 11 9 16 16 C 1.34777 * 119.99985 * 180.02562 * 15 14 11 17 17 O 1.21273 * 119.99922 * 359.97438 * 16 15 14 18 18 C 1.50705 * 119.99869 * 180.02562 * 16 15 14 19 19 S 1.80996 * 109.46934 * 179.97438 * 18 16 15 20 20 C 1.76204 * 100.00010 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99759 * 0.02562 * 20 19 18 22 22 C 1.38792 * 120.00358 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00127 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99960 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47232 * 89.99854 * 24 22 20 26 26 H 1.48496 * 109.47049 * 210.00218 * 24 22 20 27 27 H 1.48500 * 109.46913 * 330.00076 * 24 22 20 28 28 H 1.09003 * 109.47242 * 270.02038 * 1 2 3 29 29 H 1.09004 * 109.47536 * 30.02181 * 1 2 3 30 30 H 1.09001 * 109.47874 * 150.02364 * 1 2 3 31 31 H 1.08995 * 109.47195 * 89.97299 * 5 4 3 32 32 H 1.08996 * 109.47070 * 209.97608 * 5 4 3 33 33 H 1.09003 * 109.47068 * 329.97665 * 5 4 3 34 34 H 1.07999 * 126.12479 * 180.02562 * 6 4 3 35 35 H 1.08993 * 109.47096 * 19.68859 * 8 7 6 36 36 H 1.09002 * 109.46907 * 139.69049 * 8 7 6 37 37 H 1.09004 * 109.47000 * 59.99943 * 10 9 8 38 38 H 1.08997 * 109.46816 * 179.97438 * 10 9 8 39 39 H 1.09001 * 109.47528 * 299.99695 * 10 9 8 40 40 H 1.08996 * 109.47633 * 59.99973 * 13 11 9 41 41 H 1.09006 * 109.46945 * 180.02562 * 13 11 9 42 42 H 1.09001 * 109.47062 * 299.99525 * 13 11 9 43 43 H 1.08998 * 109.47211 * 64.99967 * 14 11 9 44 44 H 1.09000 * 109.46824 * 184.99782 * 14 11 9 45 45 H 0.97000 * 119.99967 * 0.02562 * 15 14 11 46 46 H 1.09004 * 109.46929 * 300.00067 * 18 16 15 47 47 H 1.09000 * 109.47130 * 59.99348 * 18 16 15 48 48 H 0.97007 * 120.00245 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6340 0.0006 5 6 4.7899 1.5006 0.0003 6 6 3.6142 -0.7154 0.0004 7 6 2.3271 -1.1331 0.0002 8 6 1.8598 -2.5659 0.0056 9 7 1.4743 -2.9603 -1.3560 10 6 2.6403 -2.9762 -2.2494 11 6 0.7945 -4.2625 -1.3543 12 1 -0.0538 -4.2285 -0.6706 13 6 1.7726 -5.3478 -0.8998 14 6 0.2992 -4.5811 -2.7663 15 7 -0.5429 -3.4832 -3.2478 16 6 -1.0942 -3.5455 -4.4760 17 8 -0.8928 -4.5101 -5.1829 18 6 -1.9599 -2.4158 -4.9715 19 16 -2.5460 -2.7928 -6.6420 20 6 -3.5043 -1.3494 -6.9630 21 1 -3.5799 -0.5740 -6.2151 22 6 -4.1622 -1.2090 -8.1771 23 7 -4.8777 -0.1305 -8.4170 24 14 -4.0321 -2.5505 -9.4705 25 1 -5.1264 -3.5349 -9.2744 26 1 -4.1455 -1.9470 -10.8226 27 1 -2.7209 -3.2358 -9.3427 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3635 -0.8902 -0.5134 31 1 5.0824 1.7166 1.0278 32 1 5.6095 0.9975 -0.5126 33 1 4.5566 2.4326 -0.5146 34 1 4.4890 -1.3486 0.0011 35 1 2.6665 -3.2098 0.3558 36 1 1.0011 -2.6655 0.6696 37 1 3.3757 -3.6880 -1.8743 38 1 2.3268 -3.2719 -3.2506 39 1 3.0836 -1.9811 -2.2861 40 1 2.1255 -5.1208 0.1062 41 1 1.2682 -6.3141 -0.8990 42 1 2.6209 -5.3817 -1.5834 43 1 1.1535 -4.7027 -3.4322 44 1 -0.2815 -5.5033 -2.7482 45 1 -0.7036 -2.7114 -2.6826 46 1 -2.8140 -2.2935 -4.3054 47 1 -1.3788 -1.4938 -4.9901 48 1 -5.3371 -0.0322 -9.2657 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734028428.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:56 Heat of formation + Delta-G solvation = 19.006275 kcal Electronic energy + Delta-G solvation = -27276.243685 eV Core-core repulsion = 23493.318128 eV Total energy + Delta-G solvation = -3782.925557 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.17347 -40.71401 -39.21251 -35.59243 -34.72422 -34.65106 -32.84990 -31.19837 -30.58500 -30.24802 -28.25703 -27.86547 -26.83817 -26.29875 -24.34326 -21.65145 -21.63262 -20.91605 -20.19581 -19.77270 -17.76831 -17.54467 -17.46490 -17.22005 -17.00141 -16.46394 -16.15227 -15.79792 -15.59573 -15.42125 -14.96024 -14.83000 -14.62678 -14.30787 -14.27905 -14.14282 -13.86670 -13.51335 -13.43699 -13.33615 -13.14807 -13.01551 -12.99127 -12.88273 -12.82579 -12.77759 -12.56895 -12.31854 -12.01826 -11.85788 -11.69204 -11.34212 -11.15644 -10.93393 -10.51382 -10.11182 -9.98900 -9.32164 -9.03957 -8.97011 -8.50028 -6.20353 1.00432 1.01947 1.32349 1.48456 1.58767 1.65875 1.73391 1.80491 2.25984 2.36272 2.75361 2.88059 3.18461 3.69346 3.81970 3.95115 3.97789 4.11356 4.25636 4.27002 4.30555 4.38323 4.42664 4.44337 4.51630 4.54813 4.65236 4.67627 4.69067 4.71757 4.81523 4.88497 4.90731 4.91982 5.10852 5.15270 5.17497 5.22592 5.27300 5.36031 5.54705 5.72421 5.83118 6.13141 6.17415 6.21881 6.26891 6.62037 6.86448 6.95119 7.31050 8.62595 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012502 B = 0.002536 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.040346 B =11038.276722 C =12498.838219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.080 3.920 3 N -0.349 5.349 4 N -0.386 5.386 5 C 0.095 3.905 6 C 0.062 3.938 7 C -0.239 4.239 8 C 0.142 3.858 9 N -0.537 5.537 10 C 0.028 3.972 11 C 0.078 3.922 12 H 0.105 0.895 13 C -0.179 4.179 14 C 0.129 3.871 15 N -0.697 5.697 16 C 0.533 3.467 17 O -0.569 6.569 18 C -0.110 4.110 19 S -0.175 6.175 20 C -0.528 4.528 21 H 0.060 0.940 22 C 0.044 3.956 23 N -0.919 5.919 24 Si 0.916 3.084 25 H -0.261 1.261 26 H -0.259 1.259 27 H -0.237 1.237 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.200 0.800 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.418 0.582 46 H 0.112 0.888 47 H 0.106 0.894 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.046 -5.435 25.168 33.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 N -0.173 5.173 4 N -0.167 5.167 5 C -0.045 4.045 6 C -0.085 4.085 7 C -0.251 4.251 8 C 0.014 3.986 9 N -0.261 5.261 10 C -0.120 4.120 11 C -0.030 4.030 12 H 0.123 0.877 13 C -0.238 4.238 14 C 0.005 3.995 15 N -0.350 5.350 16 C 0.318 3.682 17 O -0.448 6.448 18 C -0.261 4.261 19 S 0.052 5.948 20 C -0.675 4.675 21 H 0.079 0.921 22 C -0.161 4.161 23 N -0.557 5.557 24 Si 0.738 3.262 25 H -0.186 1.186 26 H -0.184 1.184 27 H -0.161 1.161 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.131 0.869 33 H 0.100 0.900 34 H 0.217 0.783 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.255 0.745 46 H 0.130 0.870 47 H 0.124 0.876 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 22.144 -5.176 23.742 32.876 hybrid contribution 0.004 0.342 0.384 0.515 sum 22.148 -4.834 24.126 33.105 Atomic orbital electron populations 1.20234 0.85981 1.03665 1.03269 1.22585 0.97677 0.90490 0.97836 1.77289 0.87938 1.24342 1.27769 1.48661 1.05529 1.05630 1.56877 1.22105 0.83114 0.94897 1.04351 1.22830 0.99968 0.84889 1.00816 1.19983 0.91619 0.96244 1.17236 1.20258 1.00140 0.89219 0.88981 1.62122 1.26833 1.27445 1.09685 1.22286 0.92149 1.01007 0.96532 1.21930 0.97937 0.88330 0.94843 0.87658 1.22338 0.99859 0.99396 1.02219 1.21509 0.93655 0.89364 0.95018 1.45592 1.50040 1.24004 1.15409 1.19888 0.79655 0.86546 0.82077 1.90672 1.62058 1.35010 1.57095 1.23249 1.02587 1.00984 0.99232 1.84644 1.63879 1.29206 1.17089 1.22470 1.34466 1.05135 1.05455 0.92141 1.25585 0.93261 0.97718 0.99549 1.70023 1.31485 1.28435 1.25730 0.85847 0.81443 0.79777 0.79181 1.18561 1.18371 1.16080 0.89720 0.92319 0.88807 0.89621 0.86932 0.90020 0.78345 0.92594 0.89279 0.93843 0.93118 0.92510 0.90507 0.91195 0.92358 0.92724 0.91491 0.74499 0.87005 0.87558 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.26 71.23 0.73 -0.53 16 2 C 0.08 1.66 7.22 43.10 0.31 1.97 16 3 N -0.35 -8.44 12.58 -47.39 -0.60 -9.04 16 4 N -0.39 -6.64 4.01 -369.57 -1.48 -8.13 16 5 C 0.10 0.85 11.47 127.77 1.47 2.31 16 6 C 0.06 0.85 10.74 83.54 0.90 1.75 16 7 C -0.24 -3.78 4.69 -20.14 -0.09 -3.87 16 8 C 0.14 1.57 4.52 85.56 0.39 1.96 16 9 N -0.54 -7.21 4.18 -901.61 -3.77 -10.98 16 10 C 0.03 0.43 8.55 127.69 1.09 1.52 16 11 C 0.08 0.96 2.50 44.91 0.11 1.07 16 12 H 0.11 1.07 8.03 -2.39 -0.02 1.05 16 13 C -0.18 -1.63 8.50 71.98 0.61 -1.02 16 14 C 0.13 2.55 4.69 86.38 0.41 2.96 16 15 N -0.70 -17.04 5.39 -463.08 -2.50 -19.54 16 16 C 0.53 18.85 7.85 87.66 0.69 19.54 16 17 O -0.57 -24.74 15.86 -3.01 -0.05 -24.79 16 18 C -0.11 -4.30 6.16 71.24 0.44 -3.86 16 19 S -0.17 -9.05 18.55 -56.49 -1.05 -10.10 16 20 C -0.53 -31.43 10.04 67.95 0.68 -30.75 16 21 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 22 C 0.04 2.63 5.50 84.86 0.47 3.10 16 23 N -0.92 -56.98 13.97 21.65 0.30 -56.68 16 24 Si 0.92 45.82 27.74 68.60 1.90 47.72 16 25 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 26 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.24 -11.84 6.74 99.48 0.67 -11.17 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.41 7.97 -2.39 -0.02 1.39 16 31 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.20 1.20 8.06 -2.91 -0.02 1.17 16 35 H 0.06 0.46 6.93 -2.39 -0.02 0.44 16 36 H 0.09 0.87 8.00 -2.39 -0.02 0.85 16 37 H 0.04 0.51 6.51 -2.38 -0.02 0.49 16 38 H 0.05 0.99 6.24 -2.39 -0.01 0.98 16 39 H 0.06 0.98 6.78 -2.39 -0.02 0.96 16 40 H 0.08 0.51 6.75 -2.39 -0.02 0.49 16 41 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 42 H 0.06 0.60 6.47 -2.39 -0.02 0.59 16 43 H 0.05 1.24 6.61 -2.39 -0.02 1.23 16 44 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.42 8.49 8.14 -92.71 -0.75 7.74 16 46 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 47 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 48 H 0.28 15.84 8.31 -92.70 -0.77 15.07 16 Total: -1.00 -80.98 402.02 1.13 -79.86 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.17 Total: 15.54 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 8.19 Total: -3.85 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -8.04 Total: -104.37 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.05 Total: -24.79 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.90 Total: 47.72 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.10 kcal Total: -80.98 1.13 -79.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734028428.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.862 kcal (2) G-P(sol) polarization free energy of solvation -80.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds