Wall clock time and date at job start Sat Apr 11 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39872 * 125.89613 * 2 1 4 4 C 1.35314 * 107.91954 * 180.14407 * 3 2 1 5 5 C 1.50703 * 126.12759 * 179.90471 * 4 3 2 6 6 N 1.34949 * 107.74826 * 359.63758 * 4 3 2 7 7 C 1.46492 * 126.04227 * 180.20931 * 6 4 3 8 8 C 1.53001 * 109.47510 * 89.99746 * 7 6 4 9 9 N 1.46892 * 109.47455 * 180.02562 * 8 7 6 10 10 C 1.46899 * 111.00071 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.47379 * 180.02562 * 10 9 8 12 12 N 1.46497 * 109.47296 * 180.02562 * 11 10 9 13 13 C 1.46496 * 120.00583 * 89.99624 * 12 11 10 14 14 C 1.34780 * 119.99901 * 269.99632 * 12 11 10 15 15 O 1.21288 * 119.99622 * 359.97438 * 14 12 11 16 16 C 1.50696 * 120.00189 * 180.02562 * 14 12 11 17 17 S 1.81003 * 109.46899 * 179.97438 * 16 14 12 18 18 C 1.76204 * 99.99918 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99867 * 0.02562 * 18 17 16 20 20 C 1.38795 * 120.00220 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99862 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00313 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47161 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47113 * 120.00316 * 22 20 18 25 25 H 1.48493 * 109.47701 * 240.00583 * 22 20 18 26 26 N 1.30835 * 125.89924 * 179.73974 * 2 1 3 27 27 H 1.08996 * 109.47154 * 270.23207 * 1 2 3 28 28 H 1.09001 * 109.47360 * 30.23828 * 1 2 3 29 29 H 1.08999 * 109.46997 * 150.23794 * 1 2 3 30 30 H 1.08000 * 126.03890 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47152 * 269.68517 * 5 4 3 32 32 H 1.09001 * 109.46980 * 149.68618 * 5 4 3 33 33 H 1.09004 * 109.47113 * 29.68598 * 5 4 3 34 34 H 1.09001 * 109.47504 * 210.00369 * 7 6 4 35 35 H 1.09010 * 109.47188 * 330.00050 * 7 6 4 36 36 H 1.09001 * 109.47246 * 300.00781 * 8 7 6 37 37 H 1.09010 * 109.46647 * 59.99972 * 8 7 6 38 38 H 1.00907 * 111.00332 * 303.95251 * 9 8 7 39 39 H 1.09006 * 109.47157 * 299.99536 * 10 9 8 40 40 H 1.08998 * 109.47416 * 59.99671 * 10 9 8 41 41 H 1.09006 * 109.46451 * 299.99789 * 11 10 9 42 42 H 1.08998 * 109.47262 * 59.99397 * 11 10 9 43 43 H 1.09000 * 109.47137 * 89.99500 * 13 12 11 44 44 H 1.09001 * 109.47794 * 210.00166 * 13 12 11 45 45 H 1.09004 * 109.46909 * 329.99784 * 13 12 11 46 46 H 1.08997 * 109.47199 * 300.00033 * 16 14 12 47 47 H 1.08997 * 109.47120 * 59.99829 * 16 14 12 48 48 H 0.97009 * 120.00066 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0064 6 7 3.6088 -0.6340 0.0029 7 6 4.7899 -1.5006 0.0065 8 6 5.2017 -1.7958 1.4502 9 7 6.3864 -2.6643 1.4537 10 6 6.8110 -2.9699 2.8264 11 6 8.0449 -3.8738 2.7893 12 7 8.4679 -4.1791 4.1582 13 6 7.9298 -5.3552 4.8463 14 6 9.3524 -3.3779 4.7847 15 8 9.7983 -2.4045 4.2149 16 6 9.7880 -3.6922 6.1927 17 16 10.9712 -2.4416 6.7514 18 6 11.3017 -3.0375 8.3764 19 1 10.8134 -3.9323 8.7331 20 6 12.1904 -2.3575 9.1976 21 7 12.7859 -1.2672 8.7626 22 14 12.5403 -2.9888 10.9204 23 1 11.7497 -4.2217 11.1659 24 1 13.9875 -3.2951 11.0510 25 1 12.1621 -1.9520 11.9139 26 7 2.2742 -1.0598 0.0048 27 1 -0.3633 0.0042 1.0276 28 1 -0.3634 0.8878 -0.5175 29 1 -0.3633 -0.8921 -0.5101 30 1 1.9922 2.1598 0.0004 31 1 5.1300 1.8074 -1.0349 32 1 5.6508 1.0934 0.5102 33 1 4.6072 2.5354 0.5030 34 1 4.5563 -2.4354 -0.5031 35 1 5.6093 -1.0003 -0.5100 36 1 5.4354 -0.8610 1.9597 37 1 4.3824 -2.2961 1.9666 38 1 6.2159 -3.5106 0.9314 39 1 7.0554 -2.0433 3.3459 40 1 6.0030 -3.4788 3.3519 41 1 7.8008 -4.8004 2.2696 42 1 8.8528 -3.3645 2.2639 43 1 8.5703 -6.2152 4.6509 44 1 7.8948 -5.1644 5.9189 45 1 6.9237 -5.5611 4.4809 46 1 8.9192 -3.6907 6.8508 47 1 10.2598 -4.6745 6.2163 48 1 13.4067 -0.7917 9.3367 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753171368.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:03 Heat of formation + Delta-G solvation = 37.866810 kcal Electronic energy + Delta-G solvation = -25854.519014 eV Core-core repulsion = 22072.411311 eV Total energy + Delta-G solvation = -3782.107703 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56767 -39.55091 -37.25067 -35.44237 -34.22944 -32.45971 -32.44428 -31.14099 -29.77709 -28.23680 -27.30884 -26.81360 -25.72191 -25.35831 -22.81850 -22.49937 -20.68762 -19.55978 -19.18785 -17.70013 -17.00380 -16.75635 -16.54155 -15.96360 -15.70920 -15.40094 -14.82048 -14.68283 -14.51135 -14.19439 -14.04102 -13.76978 -13.63071 -13.56478 -13.25929 -13.18750 -13.03932 -12.88361 -12.77043 -12.55925 -12.42988 -12.25446 -12.12556 -12.06299 -11.78617 -11.69708 -11.17820 -11.08457 -11.03237 -10.77557 -10.76426 -9.81347 -9.41067 -9.34159 -9.08878 -8.90622 -8.77001 -8.58952 -8.23998 -6.51796 -6.23250 -3.93898 1.55780 2.11605 2.49724 2.86712 3.01810 3.20262 3.24054 3.29568 3.54370 3.94580 4.17541 4.18688 4.33408 4.47255 4.58051 4.72443 4.75734 4.88754 4.92659 5.03656 5.05682 5.07097 5.12048 5.14864 5.22453 5.28858 5.29261 5.34533 5.37793 5.39648 5.52814 5.55160 5.56366 5.62503 5.64717 5.78478 5.86096 5.92705 5.93915 6.11001 6.40599 6.44044 6.63642 6.74705 6.94904 7.48033 7.48196 7.58409 8.33813 8.52415 9.22202 10.84217 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.001667 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.042873 B =16794.776470 C =17379.438196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.072 3.928 3 C -0.276 4.276 4 C 0.091 3.909 5 C -0.097 4.097 6 N -0.369 5.369 7 C 0.135 3.865 8 C 0.046 3.954 9 N -0.681 5.681 10 C 0.046 3.954 11 C 0.121 3.879 12 N -0.625 5.625 13 C 0.081 3.919 14 C 0.532 3.468 15 O -0.511 6.511 16 C -0.150 4.150 17 S -0.062 6.062 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 N -0.300 5.300 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.341 0.659 39 H 0.081 0.919 40 H 0.031 0.969 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.416 -1.958 -18.800 28.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.095 4.095 3 C -0.306 4.306 4 C -0.036 4.036 5 C -0.156 4.156 6 N -0.151 5.151 7 C 0.013 3.987 8 C -0.084 4.084 9 N -0.313 5.313 10 C -0.084 4.084 11 C -0.003 4.003 12 N -0.362 5.362 13 C -0.063 4.063 14 C 0.320 3.680 15 O -0.385 6.385 16 C -0.301 4.301 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.206 1.206 26 N -0.122 5.122 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.163 0.837 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.158 0.842 39 H 0.100 0.900 40 H 0.050 0.950 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.008 -1.216 -19.664 28.080 hybrid contribution -1.039 -1.409 2.150 2.772 sum -21.047 -2.625 -17.515 27.507 Atomic orbital electron populations 1.20166 0.86770 1.03167 1.02930 1.22320 0.96905 0.90855 0.99379 1.21127 0.90997 0.99765 1.18665 1.21178 0.97450 0.84621 1.00383 1.20522 0.93136 0.98380 1.03517 1.48462 1.05160 1.04090 1.57418 1.21591 0.83903 0.95280 0.97937 1.22267 0.91653 0.98798 0.95726 1.60255 1.34587 1.21305 1.15111 1.22356 0.96645 1.00800 0.88579 1.21238 0.97173 0.98513 0.83327 1.47822 1.45448 1.27860 1.15087 1.21773 0.98541 0.87607 0.98377 1.20383 0.77641 0.82093 0.87897 1.90708 1.54157 1.26949 1.66638 1.23560 1.04992 1.06667 0.94881 1.85404 1.50707 1.31514 1.15880 1.22900 1.31089 1.14701 0.99629 0.90897 1.24991 0.94937 0.94672 0.98984 1.70030 1.27132 1.16322 1.36749 0.86117 0.78239 0.78765 0.82372 1.19629 1.20545 1.20564 1.77310 0.86316 1.22744 1.25862 0.90579 0.90475 0.91055 0.83661 0.90060 0.90576 0.89474 0.88824 0.87834 0.90195 0.94221 0.84172 0.90010 0.95046 0.91039 0.88754 0.92572 0.90588 0.91626 0.89294 0.89231 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.45 36.01 0.38 -0.10 16 2 C 0.07 0.73 7.22 -82.40 -0.59 0.13 16 3 C -0.28 -2.61 10.65 -40.01 -0.43 -3.03 16 4 C 0.09 0.85 6.93 -82.26 -0.57 0.28 16 5 C -0.10 -0.63 9.90 36.01 0.36 -0.27 16 6 N -0.37 -3.77 3.61 -57.14 -0.21 -3.98 16 7 C 0.13 1.07 6.33 -4.05 -0.03 1.04 16 8 C 0.05 0.41 6.01 -3.83 -0.02 0.39 16 9 N -0.68 -6.00 6.50 -113.78 -0.74 -6.74 16 10 C 0.05 0.50 6.01 -3.82 -0.02 0.48 16 11 C 0.12 1.39 5.67 -4.04 -0.02 1.37 16 12 N -0.63 -8.57 2.87 -181.57 -0.52 -9.09 16 13 C 0.08 0.81 10.24 59.84 0.61 1.42 16 14 C 0.53 10.00 7.69 -10.99 -0.08 9.92 16 15 O -0.51 -11.55 15.44 5.55 0.09 -11.47 16 16 C -0.15 -3.04 4.71 36.00 0.17 -2.87 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 18 C -0.53 -15.19 9.50 30.94 0.29 -14.90 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 22 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 N -0.30 -3.56 12.58 33.67 0.42 -3.14 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.50 7.72 -51.93 -0.40 0.10 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.69 7.66 -51.92 -0.40 0.30 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.04 0.40 8.14 -51.92 -0.42 -0.03 16 38 H 0.34 2.30 8.73 -39.29 -0.34 1.96 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 42 H 0.09 1.30 7.42 -51.93 -0.39 0.91 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.79 6.44 -51.93 -0.33 0.45 16 45 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 46 H 0.09 1.66 7.40 -51.92 -0.38 1.28 16 47 H 0.09 1.68 8.11 -51.92 -0.42 1.26 16 48 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 415.83 15.07 6.27 6.27 Total: -1.00 -36.35 415.83 -9.37 -45.72 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -8.12 Total: -0.49 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -0.06 Total: -4.16 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.31 Total: -48.29 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -36.35 -9.37 -45.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753171368.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.586 kcal (2) G-P(sol) polarization free energy of solvation -36.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds