Wall clock time and date at job start Sat Apr 11 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39872 * 125.89613 * 2 1 4 4 C 1.35314 * 107.91954 * 180.14407 * 3 2 1 5 5 C 1.50703 * 126.12759 * 179.90471 * 4 3 2 6 6 N 1.34949 * 107.74826 * 359.63758 * 4 3 2 7 7 C 1.46492 * 126.04227 * 180.20931 * 6 4 3 8 8 C 1.53001 * 109.47510 * 89.99746 * 7 6 4 9 9 N 1.46892 * 109.47455 * 180.02562 * 8 7 6 10 10 C 1.46899 * 111.00071 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.47379 * 180.02562 * 10 9 8 12 12 N 1.46497 * 109.47296 * 180.02562 * 11 10 9 13 13 C 1.46496 * 120.00583 * 89.99624 * 12 11 10 14 14 C 1.34780 * 119.99901 * 269.99632 * 12 11 10 15 15 O 1.21288 * 119.99622 * 359.97438 * 14 12 11 16 16 C 1.50696 * 120.00189 * 180.02562 * 14 12 11 17 17 S 1.81003 * 109.46899 * 179.97438 * 16 14 12 18 18 C 1.76204 * 99.99918 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99867 * 0.02562 * 18 17 16 20 20 C 1.38795 * 120.00220 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99862 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00313 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47161 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47113 * 120.00316 * 22 20 18 25 25 H 1.48493 * 109.47701 * 240.00583 * 22 20 18 26 26 N 1.30835 * 125.89924 * 179.73974 * 2 1 3 27 27 H 1.08996 * 109.47154 * 270.23207 * 1 2 3 28 28 H 1.09001 * 109.47360 * 30.23828 * 1 2 3 29 29 H 1.08999 * 109.46997 * 150.23794 * 1 2 3 30 30 H 1.08000 * 126.03890 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47152 * 269.68517 * 5 4 3 32 32 H 1.09001 * 109.46980 * 149.68618 * 5 4 3 33 33 H 1.09004 * 109.47113 * 29.68598 * 5 4 3 34 34 H 1.09001 * 109.47504 * 210.00369 * 7 6 4 35 35 H 1.09010 * 109.47188 * 330.00050 * 7 6 4 36 36 H 1.09001 * 109.47246 * 300.00781 * 8 7 6 37 37 H 1.09010 * 109.46647 * 59.99972 * 8 7 6 38 38 H 1.00907 * 111.00332 * 303.95251 * 9 8 7 39 39 H 1.09006 * 109.47157 * 299.99536 * 10 9 8 40 40 H 1.08998 * 109.47416 * 59.99671 * 10 9 8 41 41 H 1.09006 * 109.46451 * 299.99789 * 11 10 9 42 42 H 1.08998 * 109.47262 * 59.99397 * 11 10 9 43 43 H 1.09000 * 109.47137 * 89.99500 * 13 12 11 44 44 H 1.09001 * 109.47794 * 210.00166 * 13 12 11 45 45 H 1.09004 * 109.46909 * 329.99784 * 13 12 11 46 46 H 1.08997 * 109.47199 * 300.00033 * 16 14 12 47 47 H 1.08997 * 109.47120 * 59.99829 * 16 14 12 48 48 H 0.97009 * 120.00066 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0064 6 7 3.6088 -0.6340 0.0029 7 6 4.7899 -1.5006 0.0065 8 6 5.2017 -1.7958 1.4502 9 7 6.3864 -2.6643 1.4537 10 6 6.8110 -2.9699 2.8264 11 6 8.0449 -3.8738 2.7893 12 7 8.4679 -4.1791 4.1582 13 6 7.9298 -5.3552 4.8463 14 6 9.3524 -3.3779 4.7847 15 8 9.7983 -2.4045 4.2149 16 6 9.7880 -3.6922 6.1927 17 16 10.9712 -2.4416 6.7514 18 6 11.3017 -3.0375 8.3764 19 1 10.8134 -3.9323 8.7331 20 6 12.1904 -2.3575 9.1976 21 7 12.7859 -1.2672 8.7626 22 14 12.5403 -2.9888 10.9204 23 1 11.7497 -4.2217 11.1659 24 1 13.9875 -3.2951 11.0510 25 1 12.1621 -1.9520 11.9139 26 7 2.2742 -1.0598 0.0048 27 1 -0.3633 0.0042 1.0276 28 1 -0.3634 0.8878 -0.5175 29 1 -0.3633 -0.8921 -0.5101 30 1 1.9922 2.1598 0.0004 31 1 5.1300 1.8074 -1.0349 32 1 5.6508 1.0934 0.5102 33 1 4.6072 2.5354 0.5030 34 1 4.5563 -2.4354 -0.5031 35 1 5.6093 -1.0003 -0.5100 36 1 5.4354 -0.8610 1.9597 37 1 4.3824 -2.2961 1.9666 38 1 6.2159 -3.5106 0.9314 39 1 7.0554 -2.0433 3.3459 40 1 6.0030 -3.4788 3.3519 41 1 7.8008 -4.8004 2.2696 42 1 8.8528 -3.3645 2.2639 43 1 8.5703 -6.2152 4.6509 44 1 7.8948 -5.1644 5.9189 45 1 6.9237 -5.5611 4.4809 46 1 8.9192 -3.6907 6.8508 47 1 10.2598 -4.6745 6.2163 48 1 13.4067 -0.7917 9.3367 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753171368.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:02 Heat of formation + Delta-G solvation = 12.512231 kcal Electronic energy + Delta-G solvation = -25855.618471 eV Core-core repulsion = 22072.411311 eV Total energy + Delta-G solvation = -3783.207160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.26152 -40.89056 -38.13893 -36.58783 -34.99897 -34.59501 -33.15171 -32.08026 -30.81681 -29.26097 -27.94938 -27.71053 -27.63532 -26.46755 -23.64178 -23.40128 -21.37714 -20.64977 -20.20292 -19.54089 -18.10801 -17.71030 -17.48311 -17.12611 -16.89070 -16.67441 -16.40203 -15.92248 -15.45810 -15.22241 -15.03775 -14.66225 -14.58135 -14.32598 -14.24852 -14.20836 -14.10170 -13.73992 -13.60941 -13.57011 -13.27609 -13.21385 -13.14303 -13.05828 -12.91990 -12.71165 -12.63053 -12.62102 -12.47672 -12.07097 -11.70306 -11.48654 -11.16733 -10.92436 -10.27435 -10.07216 -9.78987 -9.61898 -9.46989 -8.68437 -8.35666 -6.14076 0.84335 1.24482 1.40766 1.42454 1.47835 1.56322 1.57164 1.79888 2.07935 2.26405 2.98599 3.12006 3.27198 3.52811 3.69039 3.72923 3.79299 3.91043 4.02534 4.06586 4.18055 4.20169 4.23101 4.31877 4.39504 4.46291 4.50040 4.56147 4.64248 4.65814 4.68151 4.76469 4.81096 4.81814 4.90691 4.94003 4.95831 5.02878 5.08937 5.31129 5.41044 5.49234 5.70492 5.77183 6.08932 6.18835 6.23190 6.32571 6.76259 7.05672 7.12862 8.73843 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.001667 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.042873 B =16794.776470 C =17379.438196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.060 3.940 3 C -0.292 4.292 4 C 0.083 3.917 5 C -0.094 4.094 6 N -0.378 5.378 7 C 0.137 3.863 8 C 0.058 3.942 9 N -0.678 5.678 10 C 0.057 3.943 11 C 0.122 3.878 12 N -0.612 5.612 13 C 0.071 3.929 14 C 0.529 3.471 15 O -0.561 6.561 16 C -0.124 4.124 17 S -0.154 6.154 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.274 1.274 26 N -0.338 5.338 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.163 0.837 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.062 0.938 37 H 0.029 0.971 38 H 0.358 0.642 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.115 0.885 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.929 -3.948 -18.769 29.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 C -0.321 4.321 4 C -0.045 4.045 5 C -0.152 4.152 6 N -0.161 5.161 7 C 0.016 3.984 8 C -0.073 4.073 9 N -0.312 5.312 10 C -0.073 4.073 11 C -0.001 4.001 12 N -0.346 5.346 13 C -0.071 4.071 14 C 0.316 3.684 15 O -0.439 6.439 16 C -0.275 4.275 17 S 0.074 5.926 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.200 1.200 26 N -0.161 5.161 27 H 0.101 0.899 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.181 0.819 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.134 0.866 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.177 0.823 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.133 0.867 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.117 0.883 46 H 0.125 0.875 47 H 0.126 0.874 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.568 -3.263 -19.659 29.365 hybrid contribution -0.673 -0.839 2.028 2.296 sum -22.241 -4.102 -17.631 28.676 Atomic orbital electron populations 1.20277 0.84747 1.04160 1.03671 1.22921 0.98407 0.90768 0.98454 1.21479 0.91103 1.00588 1.18881 1.21692 0.98521 0.84706 0.99548 1.20594 0.91866 0.98209 1.04547 1.48636 1.05127 1.04659 1.57631 1.21646 0.83759 0.95778 0.97219 1.22098 0.91050 0.97853 0.96265 1.60149 1.34629 1.22247 1.14133 1.22117 0.96756 0.98964 0.89474 1.21386 0.96372 1.00373 0.81978 1.47810 1.43462 1.27602 1.15725 1.22110 1.00626 0.86278 0.98089 1.20180 0.78534 0.82252 0.87392 1.90692 1.56476 1.29296 1.67464 1.23381 1.03457 1.04481 0.96204 1.85591 1.53992 1.35990 1.17063 1.23229 1.31374 1.15025 0.99698 0.89904 1.26131 0.94461 0.94700 1.03849 1.70193 1.27972 1.17908 1.38684 0.84899 0.78316 0.78601 0.76092 1.17977 1.19888 1.19960 1.77239 0.87272 1.24036 1.27570 0.89861 0.88539 0.90989 0.81897 0.88583 0.90946 0.88384 0.87859 0.86575 0.91905 0.95299 0.82281 0.93750 0.93747 0.86742 0.91299 0.90737 0.90847 0.88278 0.87520 0.87416 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.45 71.24 0.74 -0.12 16 2 C 0.06 1.20 7.22 43.10 0.31 1.51 16 3 C -0.29 -5.31 10.65 21.99 0.23 -5.08 16 4 C 0.08 1.50 6.93 41.41 0.29 1.79 16 5 C -0.09 -1.14 9.90 71.24 0.71 -0.43 16 6 N -0.38 -7.61 3.61 -334.70 -1.21 -8.82 16 7 C 0.14 2.08 6.33 86.38 0.55 2.62 16 8 C 0.06 1.01 6.01 86.30 0.52 1.53 16 9 N -0.68 -11.15 6.50 -513.88 -3.34 -14.50 16 10 C 0.06 1.19 6.01 86.30 0.52 1.71 16 11 C 0.12 2.58 5.67 86.38 0.49 3.07 16 12 N -0.61 -15.63 2.87 -846.75 -2.43 -18.07 16 13 C 0.07 1.16 10.24 127.77 1.31 2.47 16 14 C 0.53 19.88 7.69 87.66 0.67 20.56 16 15 O -0.56 -26.36 15.44 -3.05 -0.05 -26.41 16 16 C -0.12 -4.97 4.71 71.23 0.34 -4.64 16 17 S -0.15 -8.59 20.57 -56.49 -1.16 -9.76 16 18 C -0.55 -31.19 9.50 67.95 0.65 -30.55 16 19 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 20 C 0.01 0.76 5.49 84.86 0.47 1.22 16 21 N -0.91 -56.07 13.22 21.65 0.29 -55.79 16 22 Si 1.00 43.53 29.55 68.60 2.03 45.55 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 26 N -0.34 -8.00 12.58 -47.38 -0.60 -8.60 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 31 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.93 7.72 -2.39 -0.02 0.91 16 33 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.12 1.44 7.66 -2.38 -0.02 1.42 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.36 3.97 8.73 -89.69 -0.78 3.19 16 39 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.11 1.49 8.07 -2.38 -0.02 1.47 16 42 H 0.07 1.87 7.42 -2.39 -0.02 1.86 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.07 1.28 6.44 -2.39 -0.02 1.27 16 45 H 0.10 1.03 8.07 -2.38 -0.02 1.01 16 46 H 0.11 3.87 7.40 -2.40 -0.02 3.85 16 47 H 0.11 3.90 8.11 -2.40 -0.02 3.88 16 48 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -83.06 415.83 1.47 -81.59 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.16 Total: 19.12 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 7.78 Total: -4.34 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -7.29 Total: -105.76 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.41 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.76 kcal Total: -83.06 1.47 -81.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753171368.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.104 kcal (2) G-P(sol) polarization free energy of solvation -83.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds