Wall clock time and date at job start Sat Apr 11 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30879 * 122.99069 * 2 1 4 4 C 1.30230 * 117.26958 * 180.26660 * 3 2 1 5 5 N 1.37838 * 124.74930 * 180.02562 * 4 3 2 6 6 C 1.46502 * 120.00123 * 359.95545 * 5 4 3 7 7 C 1.46499 * 119.99919 * 179.97438 * 5 4 3 8 8 S 1.70923 * 110.50247 * 359.97438 * 4 3 2 9 9 C 1.36715 * 122.98477 * 180.28995 * 2 1 3 10 10 C 1.46223 * 126.10561 * 359.73195 * 9 2 1 11 11 O 1.21749 * 119.99968 * 0.02562 * 10 9 2 12 12 N 1.34775 * 119.99830 * 179.97438 * 10 9 2 13 13 C 1.46501 * 119.99983 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46765 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.47383 * 294.99761 * 14 13 12 16 16 N 1.46497 * 109.47519 * 55.00338 * 14 13 12 17 17 C 1.36936 * 120.00037 * 204.99852 * 16 14 13 18 18 H 1.07997 * 120.00365 * 359.97438 * 17 16 14 19 19 C 1.38812 * 119.99700 * 179.97438 * 17 16 14 20 20 N 1.31621 * 119.99820 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00374 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46594 * 89.99980 * 21 19 17 23 23 H 1.48498 * 109.47235 * 210.00009 * 21 19 17 24 24 H 1.48503 * 109.46840 * 330.00215 * 21 19 17 25 25 C 1.53008 * 109.46812 * 175.00283 * 14 13 12 26 26 C 1.52998 * 109.47167 * 179.97438 * 25 14 13 27 27 C 1.52999 * 109.46986 * 299.99878 * 25 14 13 28 28 H 1.09002 * 109.47239 * 269.71179 * 1 2 3 29 29 H 1.09005 * 109.46503 * 29.70709 * 1 2 3 30 30 H 1.08997 * 109.47007 * 149.70431 * 1 2 3 31 31 H 1.08995 * 109.46786 * 90.00196 * 6 5 4 32 32 H 1.09002 * 109.46805 * 210.00364 * 6 5 4 33 33 H 1.08999 * 109.47171 * 330.00280 * 6 5 4 34 34 H 1.09008 * 109.47185 * 359.97438 * 7 5 4 35 35 H 1.09001 * 109.47046 * 119.99474 * 7 5 4 36 36 H 1.09000 * 109.47534 * 239.99919 * 7 5 4 37 37 H 0.96999 * 119.99887 * 0.02562 * 12 10 9 38 38 H 1.09002 * 109.47138 * 300.00507 * 13 12 10 39 39 H 1.09002 * 109.47118 * 60.00641 * 13 12 10 40 40 H 0.96999 * 119.99934 * 24.99805 * 16 14 13 41 41 H 0.97002 * 119.99959 * 179.97438 * 20 19 17 42 42 H 1.08993 * 109.46825 * 59.99695 * 25 14 13 43 43 H 1.08993 * 109.47387 * 180.02562 * 26 25 14 44 44 H 1.09006 * 109.47314 * 300.00089 * 26 25 14 45 45 H 1.08998 * 109.47016 * 59.99554 * 26 25 14 46 46 H 1.08999 * 109.47096 * 59.99926 * 27 25 14 47 47 H 1.09002 * 109.47403 * 180.02562 * 27 25 14 48 48 H 1.09006 * 109.47286 * 300.00267 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2196 1.0978 0.0000 4 6 3.5154 0.9679 -0.0054 5 7 4.4101 2.0165 -0.0057 6 6 3.9203 3.3973 -0.0007 7 6 5.8506 1.7503 -0.0115 8 16 3.9515 -0.6847 -0.0106 9 6 2.2513 -1.1468 -0.0058 10 6 1.7294 -2.5127 -0.0072 11 8 0.5272 -2.7051 -0.0034 12 7 2.5793 -3.5587 -0.0137 13 6 2.0565 -4.9273 -0.0156 14 6 3.2220 -5.9184 -0.0226 15 1 3.7768 -5.8204 -0.9557 16 7 4.1113 -5.6345 1.1065 17 6 5.4296 -6.0004 1.0486 18 1 5.8137 -6.4986 0.1708 19 6 6.2723 -5.7309 2.1182 20 7 7.5395 -6.0821 2.0624 21 14 5.6082 -4.8684 3.6363 22 1 5.1121 -5.8805 4.6033 23 1 6.6911 -4.0710 4.2661 24 1 4.4933 -3.9683 3.2463 25 6 2.6800 -7.3439 0.1010 26 6 3.8455 -8.3351 0.0935 27 6 1.9012 -7.4816 1.4108 28 1 -0.3634 -0.0052 1.0277 29 1 -0.3632 0.8927 -0.5093 30 1 -0.3633 -0.8873 -0.5184 31 1 3.8023 3.7371 1.0282 32 1 4.6360 4.0384 -0.5154 33 1 2.9584 3.4435 -0.5112 34 1 6.0212 0.6736 -0.0145 35 1 6.2981 2.1919 -0.9019 36 1 6.3045 2.1871 0.8780 37 1 3.5371 -3.4054 -0.0170 38 1 1.4503 -5.0859 0.8763 39 1 1.4433 -5.0807 -0.9037 40 1 3.7663 -5.1873 1.8951 41 1 8.1285 -5.8934 2.8097 42 1 2.0184 -7.5551 -0.7390 43 1 3.4594 -9.3506 0.1811 44 1 4.4000 -8.2369 -0.8399 45 1 4.5075 -8.1240 0.9332 46 1 1.0709 -6.7754 1.4157 47 1 1.5155 -8.4972 1.4991 48 1 2.5629 -7.2703 2.2509 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753839485.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:09 Heat of formation + Delta-G solvation = 24.716128 kcal Electronic energy + Delta-G solvation = -28061.589653 eV Core-core repulsion = 24278.911694 eV Total energy + Delta-G solvation = -3782.677959 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.19273 -39.14141 -37.51006 -36.87924 -33.93030 -32.91852 -31.32282 -30.69412 -29.08475 -28.74251 -27.31616 -26.53635 -26.39726 -23.63773 -22.37628 -22.20698 -21.00211 -19.58848 -18.82765 -18.29600 -17.68382 -16.80169 -16.32303 -16.02648 -15.39836 -15.25075 -14.89028 -14.73429 -14.26887 -14.01878 -13.91799 -13.47750 -13.32024 -13.17939 -13.05489 -12.95433 -12.85878 -12.51849 -12.49854 -12.44246 -12.30554 -12.05006 -11.38021 -11.20923 -11.13956 -11.06090 -10.87275 -10.55939 -10.33796 -10.08995 -10.06743 -9.95983 -9.90912 -9.51856 -9.45773 -9.28497 -8.95578 -8.71438 -7.69927 -7.34032 -5.82856 -3.18104 0.53668 0.97087 1.67976 2.51420 2.60594 3.32541 3.37360 3.41843 3.45331 3.53586 4.25418 4.53558 4.70459 4.87119 4.91570 5.11505 5.18938 5.21412 5.25064 5.25951 5.33952 5.42546 5.46485 5.64645 5.71283 5.72666 5.74420 5.77488 5.88701 6.02851 6.07630 6.24001 6.29472 6.33158 6.39315 6.54781 6.57835 6.65331 6.68379 6.70658 6.86925 6.95920 7.36955 7.72341 7.86509 7.93659 8.35470 8.47539 9.13890 9.86394 10.06142 11.34809 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011119 B = 0.003907 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.504521 B = 7164.606887 C = 8911.550337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.198 3.802 3 N -0.555 5.555 4 C 0.320 3.680 5 N -0.581 5.581 6 C 0.100 3.900 7 C 0.088 3.912 8 S 0.148 5.852 9 C -0.349 4.349 10 C 0.601 3.399 11 O -0.545 6.545 12 N -0.714 5.714 13 C 0.110 3.890 14 C 0.172 3.828 15 H 0.062 0.938 16 N -0.744 5.744 17 C -0.239 4.239 18 H 0.095 0.905 19 C 0.010 3.990 20 N -0.931 5.931 21 Si 0.873 3.127 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.276 1.276 25 C -0.106 4.106 26 C -0.141 4.141 27 C -0.143 4.143 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.405 0.595 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.362 0.638 41 H 0.259 0.741 42 H 0.053 0.947 43 H 0.031 0.969 44 H 0.042 0.958 45 H 0.090 0.910 46 H 0.046 0.954 47 H 0.042 0.958 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.448 14.865 -5.794 17.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 N -0.281 5.281 4 C -0.048 4.048 5 N -0.300 5.300 6 C -0.044 4.044 7 C -0.055 4.055 8 S 0.400 5.600 9 C -0.475 4.475 10 C 0.388 3.612 11 O -0.425 6.425 12 N -0.365 5.365 13 C -0.014 4.014 14 C 0.063 3.937 15 H 0.080 0.920 16 N -0.387 5.387 17 C -0.369 4.369 18 H 0.113 0.887 19 C -0.186 4.186 20 N -0.578 5.578 21 Si 0.704 3.296 22 H -0.211 1.211 23 H -0.219 1.219 24 H -0.202 1.202 25 C -0.128 4.128 26 C -0.198 4.198 27 C -0.201 4.201 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.241 0.759 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.195 0.805 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.050 0.950 44 H 0.061 0.939 45 H 0.108 0.892 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.081 14.759 -5.868 17.389 hybrid contribution -0.558 0.745 1.319 1.614 sum -7.639 15.504 -4.549 17.872 Atomic orbital electron populations 1.20625 0.86230 1.04127 1.03529 1.20481 0.97698 0.84316 0.91609 1.66030 1.02179 1.31750 1.28153 1.23766 0.91005 0.93151 0.96829 1.45695 1.03923 1.03443 1.76897 1.21697 1.01000 0.79716 1.02018 1.21934 0.77811 1.02773 1.02934 1.84155 1.06420 0.97344 1.72127 1.25097 0.94562 0.98726 1.29119 1.16518 0.85977 0.82465 0.76259 1.90738 1.14352 1.85245 1.52200 1.45902 1.10249 1.05929 1.74458 1.21830 0.97197 0.80301 1.02066 1.20535 0.89476 0.91086 0.92644 0.92007 1.42814 1.07781 1.71612 1.16524 1.19050 0.83221 1.31859 1.02723 0.88728 1.24608 0.95384 1.00932 0.97711 1.69687 1.03826 1.52274 1.32034 0.86728 0.78009 0.80019 0.84883 1.21122 1.21855 1.20243 1.21583 0.96955 0.97350 0.96863 1.21837 0.98316 0.96051 1.03570 1.21815 0.99434 0.99981 0.98833 0.90263 0.91149 0.88084 0.92691 0.91018 0.90090 0.90371 0.90829 0.90860 0.75855 0.91211 0.91337 0.80491 0.93090 0.92825 0.94986 0.93852 0.89165 0.93506 0.93899 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 9.70 36.00 0.35 -0.78 16 2 C 0.20 3.02 6.83 -83.55 -0.57 2.45 16 3 N -0.56 -8.09 9.71 -10.94 -0.11 -8.20 16 4 C 0.32 4.25 7.72 -87.98 -0.68 3.57 16 5 N -0.58 -5.90 3.36 -192.00 -0.64 -6.55 16 6 C 0.10 0.77 10.59 59.85 0.63 1.41 16 7 C 0.09 0.66 10.70 59.85 0.64 1.30 16 8 S 0.15 2.07 20.44 -107.50 -2.20 -0.12 16 9 C -0.35 -5.61 6.49 -36.93 -0.24 -5.85 16 10 C 0.60 10.51 7.76 -13.05 -0.10 10.41 16 11 O -0.54 -10.29 14.30 5.14 0.07 -10.22 16 12 N -0.71 -12.19 5.38 -61.76 -0.33 -12.52 16 13 C 0.11 1.81 5.02 -4.04 -0.02 1.79 16 14 C 0.17 3.05 2.35 -67.93 -0.16 2.89 16 15 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 16 N -0.74 -15.75 3.48 -53.42 -0.19 -15.93 16 17 C -0.24 -6.02 8.05 -15.06 -0.12 -6.14 16 18 H 0.10 2.57 7.62 -52.49 -0.40 2.17 16 19 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 20 N -0.93 -27.50 13.97 55.49 0.78 -26.73 16 21 Si 0.87 21.16 27.73 -169.99 -4.71 16.45 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 25 C -0.11 -1.73 2.80 -90.62 -0.25 -1.99 16 26 C -0.14 -2.52 8.26 37.16 0.31 -2.21 16 27 C -0.14 -2.29 8.69 37.16 0.32 -1.96 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 1.43 6.05 -51.93 -0.31 1.12 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 33 H 0.08 0.72 7.59 -51.93 -0.39 0.32 16 34 H 0.08 0.66 6.31 -51.92 -0.33 0.33 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.41 7.06 7.31 -40.82 -0.30 6.77 16 38 H 0.07 1.18 6.17 -51.93 -0.32 0.86 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.36 7.92 5.66 -40.82 -0.23 7.68 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.09 1.93 6.01 -51.93 -0.31 1.62 16 46 H 0.05 0.69 6.32 -51.93 -0.33 0.37 16 47 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 1.13 7.60 -51.93 -0.39 0.74 16 LS Contribution 392.10 15.07 5.91 5.91 Total: -1.00 -31.14 392.10 -8.97 -40.11 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -7.56 Total: 12.76 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 0.01 Total: 5.04 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: -0.49 Total: -69.93 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.22 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.45 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.20 Total: -0.12 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.14 -8.97 -40.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753839485.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.825 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds