Wall clock time and date at job start Sat Apr 11 2020 06:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30879 * 122.99069 * 2 1 4 4 C 1.30230 * 117.26958 * 180.26660 * 3 2 1 5 5 N 1.37838 * 124.74930 * 180.02562 * 4 3 2 6 6 C 1.46502 * 120.00123 * 359.95545 * 5 4 3 7 7 C 1.46499 * 119.99919 * 179.97438 * 5 4 3 8 8 S 1.70923 * 110.50247 * 359.97438 * 4 3 2 9 9 C 1.36715 * 122.98477 * 180.28995 * 2 1 3 10 10 C 1.46223 * 126.10561 * 359.73195 * 9 2 1 11 11 O 1.21749 * 119.99968 * 0.02562 * 10 9 2 12 12 N 1.34775 * 119.99830 * 179.97438 * 10 9 2 13 13 C 1.46501 * 119.99983 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46765 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.47383 * 294.99761 * 14 13 12 16 16 N 1.46497 * 109.47519 * 55.00338 * 14 13 12 17 17 C 1.36936 * 120.00037 * 204.99852 * 16 14 13 18 18 H 1.07997 * 120.00365 * 359.97438 * 17 16 14 19 19 C 1.38812 * 119.99700 * 179.97438 * 17 16 14 20 20 N 1.31621 * 119.99820 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00374 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46594 * 89.99980 * 21 19 17 23 23 H 1.48498 * 109.47235 * 210.00009 * 21 19 17 24 24 H 1.48503 * 109.46840 * 330.00215 * 21 19 17 25 25 C 1.53008 * 109.46812 * 175.00283 * 14 13 12 26 26 C 1.52998 * 109.47167 * 179.97438 * 25 14 13 27 27 C 1.52999 * 109.46986 * 299.99878 * 25 14 13 28 28 H 1.09002 * 109.47239 * 269.71179 * 1 2 3 29 29 H 1.09005 * 109.46503 * 29.70709 * 1 2 3 30 30 H 1.08997 * 109.47007 * 149.70431 * 1 2 3 31 31 H 1.08995 * 109.46786 * 90.00196 * 6 5 4 32 32 H 1.09002 * 109.46805 * 210.00364 * 6 5 4 33 33 H 1.08999 * 109.47171 * 330.00280 * 6 5 4 34 34 H 1.09008 * 109.47185 * 359.97438 * 7 5 4 35 35 H 1.09001 * 109.47046 * 119.99474 * 7 5 4 36 36 H 1.09000 * 109.47534 * 239.99919 * 7 5 4 37 37 H 0.96999 * 119.99887 * 0.02562 * 12 10 9 38 38 H 1.09002 * 109.47138 * 300.00507 * 13 12 10 39 39 H 1.09002 * 109.47118 * 60.00641 * 13 12 10 40 40 H 0.96999 * 119.99934 * 24.99805 * 16 14 13 41 41 H 0.97002 * 119.99959 * 179.97438 * 20 19 17 42 42 H 1.08993 * 109.46825 * 59.99695 * 25 14 13 43 43 H 1.08993 * 109.47387 * 180.02562 * 26 25 14 44 44 H 1.09006 * 109.47314 * 300.00089 * 26 25 14 45 45 H 1.08998 * 109.47016 * 59.99554 * 26 25 14 46 46 H 1.08999 * 109.47096 * 59.99926 * 27 25 14 47 47 H 1.09002 * 109.47403 * 180.02562 * 27 25 14 48 48 H 1.09006 * 109.47286 * 300.00267 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2196 1.0978 0.0000 4 6 3.5154 0.9679 -0.0054 5 7 4.4101 2.0165 -0.0057 6 6 3.9203 3.3973 -0.0007 7 6 5.8506 1.7503 -0.0115 8 16 3.9515 -0.6847 -0.0106 9 6 2.2513 -1.1468 -0.0058 10 6 1.7294 -2.5127 -0.0072 11 8 0.5272 -2.7051 -0.0034 12 7 2.5793 -3.5587 -0.0137 13 6 2.0565 -4.9273 -0.0156 14 6 3.2220 -5.9184 -0.0226 15 1 3.7768 -5.8204 -0.9557 16 7 4.1113 -5.6345 1.1065 17 6 5.4296 -6.0004 1.0486 18 1 5.8137 -6.4986 0.1708 19 6 6.2723 -5.7309 2.1182 20 7 7.5395 -6.0821 2.0624 21 14 5.6082 -4.8684 3.6363 22 1 5.1121 -5.8805 4.6033 23 1 6.6911 -4.0710 4.2661 24 1 4.4933 -3.9683 3.2463 25 6 2.6800 -7.3439 0.1010 26 6 3.8455 -8.3351 0.0935 27 6 1.9012 -7.4816 1.4108 28 1 -0.3634 -0.0052 1.0277 29 1 -0.3632 0.8927 -0.5093 30 1 -0.3633 -0.8873 -0.5184 31 1 3.8023 3.7371 1.0282 32 1 4.6360 4.0384 -0.5154 33 1 2.9584 3.4435 -0.5112 34 1 6.0212 0.6736 -0.0145 35 1 6.2981 2.1919 -0.9019 36 1 6.3045 2.1871 0.8780 37 1 3.5371 -3.4054 -0.0170 38 1 1.4503 -5.0859 0.8763 39 1 1.4433 -5.0807 -0.9037 40 1 3.7663 -5.1873 1.8951 41 1 8.1285 -5.8934 2.8097 42 1 2.0184 -7.5551 -0.7390 43 1 3.4594 -9.3506 0.1811 44 1 4.4000 -8.2369 -0.8399 45 1 4.5075 -8.1240 0.9332 46 1 1.0709 -6.7754 1.4157 47 1 1.5155 -8.4972 1.4991 48 1 2.5629 -7.2703 2.2509 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753839485.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:05 Heat of formation + Delta-G solvation = 4.673694 kcal Electronic energy + Delta-G solvation = -28062.458758 eV Core-core repulsion = 24278.911694 eV Total energy + Delta-G solvation = -3783.547064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -41.31743 -40.38369 -38.91984 -37.82606 -35.33233 -34.74684 -32.54015 -32.33208 -30.44667 -29.37991 -28.60700 -27.79150 -27.38290 -25.35017 -23.85560 -23.17027 -22.28971 -20.84851 -20.34632 -19.48501 -19.25119 -18.02495 -17.44322 -17.02187 -16.80027 -16.47999 -16.14505 -15.95425 -15.75673 -15.29055 -15.13472 -14.85590 -14.64674 -14.56002 -14.41904 -14.19204 -13.82335 -13.50933 -13.48219 -13.45038 -13.28135 -13.04982 -12.99485 -12.88669 -12.75624 -12.47789 -12.18727 -12.11186 -12.04161 -11.79472 -11.37859 -11.25611 -11.16037 -11.02689 -10.90465 -10.67538 -10.34737 -10.04501 -9.25072 -8.66274 -7.93635 -5.24203 -0.56172 -0.06059 0.59853 1.37970 1.40933 1.45436 1.47630 1.68844 2.19658 2.24678 2.51887 3.32049 3.38683 3.60419 3.84415 3.96663 4.01838 4.13744 4.25203 4.30014 4.31762 4.39889 4.41488 4.63227 4.66149 4.67074 4.72210 4.73773 4.74665 4.85341 4.90410 4.96206 4.96341 5.11633 5.21305 5.25313 5.27778 5.32885 5.51675 5.58249 5.59441 5.78568 5.82255 5.90338 6.29103 6.46499 6.71964 7.14309 7.15996 7.89971 8.08711 9.27582 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011119 B = 0.003907 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.504521 B = 7164.606887 C = 8911.550337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.202 3.798 3 N -0.570 5.570 4 C 0.324 3.676 5 N -0.573 5.573 6 C 0.095 3.905 7 C 0.079 3.921 8 S 0.142 5.858 9 C -0.385 4.385 10 C 0.601 3.399 11 O -0.565 6.565 12 N -0.717 5.717 13 C 0.118 3.882 14 C 0.173 3.827 15 H 0.057 0.943 16 N -0.742 5.742 17 C -0.199 4.199 18 H 0.071 0.929 19 C -0.052 4.052 20 N -0.980 5.980 21 Si 0.929 3.071 22 H -0.289 1.289 23 H -0.301 1.301 24 H -0.260 1.260 25 C -0.102 4.102 26 C -0.135 4.135 27 C -0.140 4.140 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.402 0.598 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.361 0.639 41 H 0.253 0.747 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.038 0.962 45 H 0.049 0.951 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.761 16.566 -6.237 19.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.061 3.939 3 N -0.297 5.297 4 C -0.044 4.044 5 N -0.290 5.290 6 C -0.049 4.049 7 C -0.063 4.063 8 S 0.393 5.607 9 C -0.511 4.511 10 C 0.389 3.611 11 O -0.447 6.447 12 N -0.368 5.368 13 C -0.006 4.006 14 C 0.064 3.936 15 H 0.075 0.925 16 N -0.385 5.385 17 C -0.330 4.330 18 H 0.089 0.911 19 C -0.244 4.244 20 N -0.632 5.632 21 Si 0.759 3.241 22 H -0.216 1.216 23 H -0.228 1.228 24 H -0.185 1.185 25 C -0.123 4.123 26 C -0.193 4.193 27 C -0.197 4.197 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.238 0.762 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.194 0.806 41 H 0.062 0.938 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.418 16.494 -6.336 19.572 hybrid contribution -0.124 0.317 1.337 1.380 sum -8.541 16.812 -4.998 19.508 Atomic orbital electron populations 1.20617 0.85216 1.04377 1.03874 1.20827 0.98581 0.84346 0.90113 1.66105 1.02615 1.31319 1.29678 1.24056 0.91188 0.93620 0.95529 1.46200 1.04628 1.03658 1.74468 1.21912 1.01505 0.78661 1.02791 1.22224 0.76315 1.02500 1.05237 1.84068 1.05426 0.98142 1.73059 1.24988 0.95729 0.98265 1.32075 1.16682 0.85717 0.83005 0.75705 1.90714 1.14996 1.85701 1.53316 1.45922 1.10058 1.06160 1.74639 1.21773 0.96403 0.79646 1.02779 1.20684 0.89393 0.92563 0.90938 0.92461 1.42778 1.06795 1.71358 1.17604 1.18949 0.84565 1.28535 1.00949 0.91146 1.25141 0.95617 1.03083 1.00517 1.69832 1.05285 1.55228 1.32835 0.85799 0.77478 0.79040 0.81764 1.21613 1.22794 1.18476 1.21538 0.96809 0.95439 0.98508 1.21737 0.98225 0.97822 1.01482 1.21775 0.99173 1.01486 0.97262 0.89730 0.89364 0.89262 0.92035 0.87690 0.91213 0.91579 0.88142 0.88871 0.76199 0.91343 0.89668 0.80579 0.93758 0.89731 0.92932 0.94278 0.93197 0.92173 0.92173 0.94481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.08 9.70 71.23 0.69 -1.39 16 2 C 0.20 6.00 6.83 42.34 0.29 6.28 16 3 N -0.57 -15.94 9.71 -188.52 -1.83 -17.77 16 4 C 0.32 8.17 7.72 179.43 1.38 9.55 16 5 N -0.57 -10.25 3.36 -761.37 -2.56 -12.81 16 6 C 0.09 1.19 10.59 127.77 1.35 2.54 16 7 C 0.08 0.96 10.70 127.77 1.37 2.33 16 8 S 0.14 3.90 20.44 -56.49 -1.15 2.75 16 9 C -0.38 -12.24 6.49 23.99 0.16 -12.08 16 10 C 0.60 20.73 7.76 86.32 0.67 21.40 16 11 O -0.56 -21.02 14.30 -4.51 -0.06 -21.08 16 12 N -0.72 -23.95 5.38 -467.49 -2.52 -26.47 16 13 C 0.12 3.68 5.02 86.38 0.43 4.11 16 14 C 0.17 5.89 2.35 45.00 0.11 6.00 16 15 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 16 N -0.74 -31.13 3.48 -322.93 -1.12 -32.26 16 17 C -0.20 -10.17 8.05 84.03 0.68 -9.49 16 18 H 0.07 3.93 7.62 -2.91 -0.02 3.91 16 19 C -0.05 -2.89 5.50 84.86 0.47 -2.42 16 20 N -0.98 -59.74 13.97 21.65 0.30 -59.44 16 21 Si 0.93 44.38 27.73 68.60 1.90 46.28 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 24 H -0.26 -11.51 6.52 99.48 0.65 -10.86 16 25 C -0.10 -3.12 2.80 -10.79 -0.03 -3.15 16 26 C -0.14 -4.72 8.26 71.98 0.59 -4.12 16 27 C -0.14 -4.15 8.69 71.98 0.63 -3.52 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.09 2.50 6.05 -2.39 -0.01 2.48 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 0.65 8.07 -2.39 -0.02 0.63 16 33 H 0.07 1.08 7.59 -2.39 -0.02 1.06 16 34 H 0.07 1.01 6.31 -2.38 -0.02 0.99 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 37 H 0.40 13.89 7.31 -92.71 -0.68 13.21 16 38 H 0.07 2.19 6.17 -2.39 -0.01 2.17 16 39 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.36 15.49 5.66 -92.71 -0.52 14.96 16 41 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 42 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 45 H 0.05 2.15 6.01 -2.39 -0.01 2.13 16 46 H 0.06 1.62 6.32 -2.39 -0.02 1.61 16 47 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.04 1.28 7.60 -2.38 -0.02 1.26 16 Total: -1.00 -68.51 392.10 1.47 -67.05 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: -0.28 Total: 37.71 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 8.78 Total: 16.04 kcal Atomic # 7 Polarization: -141.02 SS G_CDS: -7.72 Total: -148.75 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.06 Total: -21.08 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.90 Total: 46.28 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.15 Total: 2.75 kcal Total: -68.51 1.47 -67.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753839485.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.720 kcal (2) G-P(sol) polarization free energy of solvation -68.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds