Wall clock time and date at job start Sat Apr 11 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35320 * 126.12306 * 2 1 4 4 C 1.39868 * 107.91813 * 180.14743 * 3 2 1 5 5 C 1.50704 * 125.89938 * 179.86257 * 4 3 2 6 6 N 1.46908 * 109.47077 * 94.71220 * 5 4 3 7 7 C 1.46899 * 110.99854 * 293.95540 * 6 5 4 8 8 C 1.46896 * 111.00054 * 170.00098 * 6 5 4 9 9 C 1.52995 * 109.47093 * 190.00231 * 8 6 5 10 10 H 1.09002 * 109.46830 * 294.99770 * 9 8 6 11 11 C 1.53000 * 109.47187 * 175.00278 * 9 8 6 12 12 N 1.46496 * 109.47630 * 54.99918 * 9 8 6 13 13 C 1.34777 * 120.00258 * 205.00405 * 12 9 8 14 14 O 1.21279 * 120.00166 * 359.97438 * 13 12 9 15 15 C 1.50706 * 119.99762 * 179.97438 * 13 12 9 16 16 S 1.81003 * 109.46853 * 179.97438 * 15 13 12 17 17 C 1.76196 * 99.99846 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00030 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99637 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00513 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99570 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46946 * 90.00549 * 21 19 17 23 23 H 1.48504 * 109.46826 * 210.00017 * 21 19 17 24 24 H 1.48496 * 109.47486 * 329.99998 * 21 19 17 25 25 N 1.30841 * 108.20503 * 359.59369 * 4 3 2 26 26 N 1.34941 * 126.12903 * 179.70124 * 2 1 3 27 27 C 1.46503 * 126.03892 * 0.02562 * 26 2 1 28 28 H 1.08996 * 109.47243 * 270.29042 * 1 2 3 29 29 H 1.09001 * 109.46798 * 30.29891 * 1 2 3 30 30 H 1.09005 * 109.46539 * 150.29449 * 1 2 3 31 31 H 1.08000 * 126.04398 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47059 * 334.71522 * 5 4 3 33 33 H 1.08998 * 109.47442 * 214.70708 * 5 4 3 34 34 H 1.08996 * 109.47108 * 296.04644 * 7 6 5 35 35 H 1.09000 * 109.46900 * 56.04740 * 7 6 5 36 36 H 1.09004 * 109.47192 * 176.04545 * 7 6 5 37 37 H 1.08994 * 109.47322 * 69.99880 * 8 6 5 38 38 H 1.09001 * 109.46773 * 309.99762 * 8 6 5 39 39 H 1.08992 * 109.47302 * 59.99702 * 11 9 8 40 40 H 1.09006 * 109.47229 * 180.02562 * 11 9 8 41 41 H 1.09002 * 109.46821 * 299.99498 * 11 9 8 42 42 H 0.96999 * 119.99694 * 24.99795 * 12 9 8 43 43 H 1.09000 * 109.47318 * 299.99141 * 15 13 12 44 44 H 1.09000 * 109.47161 * 59.99772 * 15 13 12 45 45 H 0.96995 * 120.00407 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.46426 * 270.01800 * 27 26 2 47 47 H 1.08999 * 109.46793 * 30.01974 * 27 26 2 48 48 H 1.08999 * 109.47321 * 150.02409 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0931 0.0000 4 6 3.6334 0.6561 -0.0034 5 6 4.8543 1.5397 -0.0075 6 7 5.3216 1.7357 1.3714 7 6 4.3411 2.4978 2.1561 8 6 6.6366 2.3898 1.3936 9 6 7.2006 2.3529 2.8153 10 1 6.5696 2.9516 3.4722 11 6 8.6211 2.9214 2.8154 12 7 7.2287 0.9685 3.2938 13 6 7.1927 0.7118 4.6164 14 8 7.1375 1.6268 5.4105 15 6 7.2210 -0.7124 5.1085 16 16 7.1620 -0.7268 6.9175 17 6 7.2058 -2.4636 7.2112 18 1 7.2539 -3.1508 6.3794 19 6 7.1774 -2.9485 8.5114 20 7 7.1173 -2.1110 9.5251 21 14 7.2232 -4.7899 8.8227 22 1 8.6340 -5.2352 8.9517 23 1 6.4902 -5.0982 10.0769 24 1 6.5818 -5.5000 7.6872 25 7 3.6335 -0.6523 0.0034 26 7 2.3027 -1.0899 0.0057 27 6 1.8540 -2.4845 0.0124 28 1 -0.3633 0.0052 1.0276 29 1 -0.3633 0.8873 -0.5185 30 1 -0.3632 -0.8927 -0.5093 31 1 1.9740 2.1212 0.0004 32 1 4.6025 2.5051 -0.4465 33 1 5.6423 1.0679 -0.5945 34 1 4.2404 3.4992 1.7378 35 1 3.3765 1.9914 2.1228 36 1 4.6790 2.5682 3.1901 37 1 6.5327 3.4256 1.0707 38 1 7.3146 1.8655 0.7201 39 1 8.6002 3.9514 2.4595 40 1 9.0231 2.8947 3.8283 41 1 9.2521 2.3227 2.1586 42 1 7.2732 0.2367 2.6587 43 1 6.3602 -1.2509 4.7123 44 1 8.1383 -1.1951 4.7714 45 1 7.0978 -2.4498 10.4337 46 1 1.7421 -2.8251 1.0418 47 1 0.8959 -2.5604 -0.5017 48 1 2.5903 -3.1056 -0.4977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754302977.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:21 Heat of formation + Delta-G solvation = 14.809698 kcal Electronic energy + Delta-G solvation = -27097.813286 eV Core-core repulsion = 23314.705752 eV Total energy + Delta-G solvation = -3783.107534 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -42.20073 -40.75565 -38.76926 -36.11377 -34.59639 -34.29804 -32.84695 -32.58381 -29.99682 -29.42476 -28.25262 -27.73862 -27.66605 -26.46983 -23.87674 -22.18125 -21.31470 -21.27245 -20.09565 -19.81822 -17.90069 -17.49181 -17.25746 -17.00183 -16.88995 -16.41860 -16.14205 -16.11039 -15.67034 -15.57408 -14.92615 -14.65401 -14.59615 -14.38448 -13.97923 -13.92989 -13.90091 -13.62128 -13.36628 -13.22241 -13.18303 -13.16686 -13.10952 -12.89986 -12.89109 -12.77178 -12.60052 -12.57994 -12.28910 -11.75165 -11.66378 -11.38744 -11.15165 -10.85073 -10.28723 -10.08334 -9.96701 -9.41987 -9.22954 -8.66741 -8.35358 -6.13238 0.94414 1.26877 1.41047 1.46187 1.57640 1.66471 1.70993 1.76052 2.26290 2.39880 2.98157 3.08173 3.33791 3.58143 3.76763 3.80681 4.04333 4.08724 4.19190 4.23629 4.29579 4.34886 4.36811 4.41738 4.46281 4.50382 4.54554 4.63242 4.66061 4.70131 4.74194 4.80277 4.80905 4.83043 4.90590 5.04498 5.05996 5.12944 5.31534 5.32147 5.40295 5.63270 5.72288 6.04941 6.10906 6.18916 6.19200 6.63599 6.84252 7.05407 7.36138 8.74051 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.008864 B = 0.002894 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.153109 B = 9672.458149 C =12074.391901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.077 3.923 3 C -0.288 4.288 4 C 0.074 3.926 5 C 0.141 3.859 6 N -0.547 5.547 7 C 0.031 3.969 8 C 0.058 3.942 9 C 0.145 3.855 10 H 0.061 0.939 11 C -0.156 4.156 12 N -0.693 5.693 13 C 0.536 3.464 14 O -0.569 6.569 15 C -0.127 4.127 16 S -0.146 6.146 17 C -0.548 4.548 18 H 0.078 0.922 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.260 1.260 25 N -0.322 5.322 26 N -0.384 5.384 27 C 0.092 3.908 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.157 0.843 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.032 0.968 41 H 0.074 0.926 42 H 0.412 0.588 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.272 0.728 46 H 0.074 0.926 47 H 0.116 0.884 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.025 6.425 -28.385 31.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.051 4.051 3 C -0.318 4.318 4 C -0.093 4.093 5 C 0.012 3.988 6 N -0.272 5.272 7 C -0.118 4.118 8 C -0.070 4.070 9 C 0.040 3.960 10 H 0.080 0.920 11 C -0.215 4.215 12 N -0.345 5.345 13 C 0.321 3.679 14 O -0.448 6.448 15 C -0.279 4.279 16 S 0.081 5.919 17 C -0.696 4.696 18 H 0.097 0.903 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.191 1.191 23 H -0.200 1.200 24 H -0.184 1.184 25 N -0.145 5.145 26 N -0.167 5.167 27 C -0.048 4.048 28 H 0.103 0.897 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.175 0.825 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.052 0.948 41 H 0.093 0.907 42 H 0.248 0.752 43 H 0.114 0.886 44 H 0.123 0.877 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.134 0.866 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.419 6.299 -26.717 29.361 hybrid contribution -0.454 -0.936 -0.599 1.200 sum -10.873 5.363 -27.317 29.886 Atomic orbital electron populations 1.20574 0.84721 1.05271 1.04128 1.21720 0.96352 0.86942 1.00097 1.21383 0.91598 0.99852 1.18922 1.22360 0.96175 0.91449 0.99300 1.20389 0.92424 0.96558 0.89432 1.61742 1.02998 1.50392 1.12082 1.22313 0.95796 0.96211 0.97447 1.22437 0.89945 0.99581 0.95059 1.21054 0.97270 0.82248 0.95429 0.92035 1.22099 0.95406 1.02391 1.01602 1.45642 1.74117 1.09549 1.05191 1.19901 0.75195 0.89583 0.83195 1.90661 1.50833 1.47314 1.56025 1.23343 1.05937 0.97483 1.01110 1.85470 1.96841 1.10688 0.98930 1.23195 1.58835 0.91719 0.95838 0.90337 1.26135 0.93692 1.04748 0.94530 1.70180 1.47890 1.37123 0.99522 0.84952 0.78857 0.76029 0.78116 1.19129 1.20019 1.18417 1.77290 0.97802 1.13512 1.25887 1.48779 1.03500 1.07365 1.57091 1.22096 1.02218 0.76511 1.03990 0.89734 0.88213 0.89493 0.82538 0.90739 0.88747 0.93494 0.92205 0.93608 0.90793 0.87971 0.89402 0.94836 0.90683 0.75222 0.88552 0.87732 0.91935 0.90742 0.86572 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 10.12 71.24 0.72 -0.08 16 2 C 0.08 1.38 6.93 41.41 0.29 1.66 16 3 C -0.29 -5.61 9.53 21.99 0.21 -5.40 16 4 C 0.07 1.65 5.94 43.10 0.26 1.90 16 5 C 0.14 2.41 5.53 85.56 0.47 2.89 16 6 N -0.55 -10.90 4.48 -927.06 -4.15 -15.05 16 7 C 0.03 0.66 9.12 127.69 1.17 1.83 16 8 C 0.06 0.91 4.52 86.30 0.39 1.30 16 9 C 0.14 3.40 2.35 44.99 0.11 3.50 16 10 H 0.06 1.79 6.23 -2.39 -0.01 1.78 16 11 C -0.16 -3.24 9.48 71.98 0.68 -2.56 16 12 N -0.69 -19.92 4.80 -442.54 -2.12 -22.04 16 13 C 0.54 21.59 7.81 87.66 0.68 22.27 16 14 O -0.57 -27.78 15.53 -3.03 -0.05 -27.83 16 15 C -0.13 -5.59 6.16 71.24 0.44 -5.15 16 16 S -0.15 -8.55 20.57 -56.49 -1.16 -9.72 16 17 C -0.55 -32.73 9.50 67.96 0.65 -32.09 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.80 5.49 84.86 0.47 1.27 16 20 N -0.91 -57.36 13.22 21.65 0.29 -57.08 16 21 Si 1.00 44.95 29.55 68.60 2.03 46.98 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 25 N -0.32 -8.53 12.58 -47.38 -0.60 -9.13 16 26 N -0.38 -8.15 4.01 -356.02 -1.43 -9.58 16 27 C 0.09 1.23 11.27 127.77 1.44 2.67 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 0.47 7.08 -2.38 -0.02 0.45 16 31 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 32 H 0.07 0.95 8.12 -2.39 -0.02 0.93 16 33 H 0.09 1.48 7.93 -2.39 -0.02 1.46 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 1.43 6.31 -2.39 -0.02 1.41 16 36 H 0.05 1.25 6.58 -2.38 -0.02 1.23 16 37 H 0.07 0.87 8.12 -2.39 -0.02 0.85 16 38 H 0.10 1.25 7.93 -2.39 -0.02 1.23 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.41 10.12 8.60 -92.71 -0.80 9.32 16 43 H 0.10 4.04 8.14 -2.39 -0.02 4.02 16 44 H 0.10 4.18 8.14 -2.40 -0.02 4.16 16 45 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 46 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.12 0.73 7.05 -2.39 -0.02 0.71 16 48 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -85.61 409.38 0.93 -84.69 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.16 Total: 24.73 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 7.97 Total: -5.98 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -8.01 Total: -112.88 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.05 Total: -27.83 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.72 kcal Total: -85.61 0.93 -84.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754302977.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.497 kcal (2) G-P(sol) polarization free energy of solvation -85.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds