Wall clock time and date at job start Sat Apr 11 2020 06:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.90347 * 2 1 4 4 N 1.40077 * 108.20904 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03484 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92645 * 0.26143 * 4 3 2 7 7 C 1.35318 * 107.74290 * 359.57821 * 6 4 3 8 8 C 1.50700 * 126.03840 * 180.16409 * 7 6 4 9 9 N 1.46896 * 109.47214 * 260.30676 * 8 7 6 10 10 C 1.46894 * 111.00421 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47434 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47108 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.47190 * 180.02562 * 12 11 10 14 14 C 1.46498 * 120.00195 * 89.99733 * 13 12 11 15 15 C 1.34777 * 119.99499 * 270.00034 * 13 12 11 16 16 O 1.21280 * 120.00416 * 359.97438 * 15 13 12 17 17 C 1.50707 * 119.99624 * 179.97438 * 15 13 12 18 18 S 1.81000 * 109.46865 * 179.97438 * 17 15 13 19 19 C 1.76205 * 99.99792 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99859 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99831 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00440 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99634 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47236 * 90.00663 * 23 21 19 25 25 H 1.48510 * 109.46956 * 210.00399 * 23 21 19 26 26 H 1.48492 * 109.47503 * 329.99997 * 23 21 19 27 27 H 1.08997 * 109.47164 * 89.98038 * 1 2 3 28 28 H 1.09002 * 109.46768 * 209.97863 * 1 2 3 29 29 H 1.08999 * 109.47145 * 329.97571 * 1 2 3 30 30 H 1.08999 * 109.46871 * 90.02616 * 5 4 3 31 31 H 1.08994 * 109.46947 * 210.02323 * 5 4 3 32 32 H 1.08997 * 109.47271 * 330.02840 * 5 4 3 33 33 H 1.08002 * 126.12338 * 179.73269 * 6 4 3 34 34 H 1.09004 * 109.46922 * 20.30232 * 8 7 6 35 35 H 1.08998 * 109.47326 * 140.30662 * 8 7 6 36 36 H 1.00902 * 110.99870 * 303.95866 * 9 8 7 37 37 H 1.09007 * 109.47399 * 300.00355 * 10 9 8 38 38 H 1.08997 * 109.47119 * 59.99940 * 10 9 8 39 39 H 1.08997 * 109.47000 * 299.99737 * 11 10 9 40 40 H 1.08997 * 109.47025 * 59.99873 * 11 10 9 41 41 H 1.09004 * 109.47406 * 299.99585 * 12 11 10 42 42 H 1.08997 * 109.47506 * 59.99893 * 12 11 10 43 43 H 1.08994 * 109.47475 * 90.00318 * 14 13 12 44 44 H 1.09001 * 109.47325 * 210.00478 * 14 13 12 45 45 H 1.09006 * 109.46938 * 330.00042 * 14 13 12 46 46 H 1.08992 * 109.47299 * 300.00107 * 17 15 13 47 47 H 1.09005 * 109.46800 * 59.99875 * 17 15 13 48 48 H 0.96998 * 120.00540 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 -0.0068 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0007 9 7 1.4789 -2.9565 -1.3645 10 6 1.0177 -4.3506 -1.4034 11 6 0.6313 -4.7202 -2.8369 12 6 0.1504 -6.1721 -2.8772 13 7 -0.2190 -6.5263 -4.2500 14 6 0.7842 -7.0907 -5.1561 15 6 -1.4819 -6.3327 -4.6792 16 8 -2.3125 -5.8658 -3.9289 17 6 -1.8618 -6.6964 -6.0915 18 16 -3.6120 -6.3220 -6.3609 19 6 -3.7787 -6.8306 -8.0397 20 1 -2.9272 -7.2309 -8.5697 21 6 -5.0048 -6.7177 -8.6805 22 7 -6.0428 -6.2302 -8.0343 23 14 -5.1817 -7.2575 -10.4600 24 1 -5.5697 -8.6902 -10.5064 25 1 -6.2284 -6.4394 -11.1237 26 1 -3.8878 -7.0720 -11.1646 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 5.0836 1.7155 1.0262 31 1 5.6089 0.9983 -0.5158 32 1 4.5560 2.4334 -0.5147 33 1 4.4892 -1.3485 -0.0129 34 1 2.6655 -3.2107 0.3503 35 1 0.9990 -2.6673 0.6602 36 1 0.7784 -2.3330 -1.7369 37 1 1.8177 -5.0077 -1.0622 38 1 0.1512 -4.4649 -0.7522 39 1 -0.1686 -4.0633 -3.1785 40 1 1.4982 -4.6060 -3.4878 41 1 0.9500 -6.8294 -2.5355 42 1 -0.7166 -6.2859 -2.2265 43 1 0.7821 -8.1772 -5.0692 44 1 0.5476 -6.8078 -6.1818 45 1 1.7696 -6.7070 -4.8915 46 1 -1.2549 -6.1212 -6.7906 47 1 -1.6894 -7.7609 -6.2513 48 1 -6.8995 -6.1510 -8.4822 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754358339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:27 Heat of formation + Delta-G solvation = 37.888856 kcal Electronic energy + Delta-G solvation = -25832.588894 eV Core-core repulsion = 22050.482147 eV Total energy + Delta-G solvation = -3782.106747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54066 -39.45300 -36.99633 -35.42956 -34.22631 -32.52713 -32.41218 -30.71178 -29.80428 -28.84930 -27.10252 -26.25926 -25.49751 -24.68958 -23.29650 -21.69350 -21.00346 -19.74659 -19.11802 -17.65102 -16.98212 -16.65586 -16.10134 -15.96682 -15.80001 -15.43392 -14.79112 -14.70495 -14.58670 -14.49642 -13.91456 -13.79513 -13.59352 -13.55761 -13.18959 -12.92874 -12.75652 -12.58391 -12.52185 -12.44666 -12.37457 -12.30265 -12.12168 -11.88432 -11.62347 -11.46120 -11.04943 -11.00648 -10.78352 -10.72379 -10.67049 -9.78728 -9.49047 -9.32239 -9.04978 -8.83114 -8.51353 -8.44444 -8.20391 -6.47988 -6.19929 -3.90312 1.58738 2.19457 2.41661 2.98426 3.09694 3.23430 3.27728 3.31745 3.63932 4.08687 4.22044 4.22695 4.45909 4.66435 4.72489 4.77831 4.92668 4.93077 4.97677 5.01935 5.11068 5.13185 5.15138 5.20442 5.25663 5.34191 5.35906 5.45800 5.47353 5.60192 5.62644 5.64071 5.68185 5.73454 5.75522 5.86056 5.93675 6.09542 6.16452 6.20655 6.39446 6.69125 6.70877 6.86541 7.18944 7.44590 7.57670 7.61434 8.36872 8.60286 9.25324 10.87495 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.001680 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.515713 B =16663.170304 C =17358.332993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.082 3.918 3 N -0.300 5.300 4 N -0.380 5.380 5 C 0.103 3.897 6 C 0.072 3.928 7 C -0.233 4.233 8 C 0.139 3.861 9 N -0.687 5.687 10 C 0.062 3.938 11 C -0.133 4.133 12 C 0.120 3.880 13 N -0.625 5.625 14 C 0.081 3.919 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.173 0.827 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.343 0.657 37 H 0.071 0.929 38 H 0.033 0.967 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.186 8.010 17.272 30.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 N -0.122 5.122 4 N -0.161 5.161 5 C -0.038 4.038 6 C -0.075 4.075 7 C -0.245 4.245 8 C 0.009 3.991 9 N -0.319 5.319 10 C -0.067 4.067 11 C -0.172 4.172 12 C -0.004 4.004 13 N -0.361 5.361 14 C -0.063 4.063 15 C 0.320 3.680 16 O -0.390 6.390 17 C -0.301 4.301 18 S 0.164 5.836 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.190 0.810 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.161 0.839 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 23.598 9.959 18.196 31.419 hybrid contribution 0.309 -1.655 -1.708 2.398 sum 23.907 8.304 16.488 30.205 Atomic orbital electron populations 1.20223 0.86674 1.03323 1.03377 1.22278 0.96882 0.90355 0.98947 1.77322 0.86395 1.22739 1.25790 1.48352 1.05565 1.04797 1.57374 1.21836 0.83639 0.95095 1.03235 1.22302 0.99218 0.84726 1.01208 1.19830 0.91915 0.95730 1.17005 1.20066 0.99181 0.90386 0.89434 1.60531 1.46775 1.03372 1.21176 1.21868 0.98511 0.89762 0.96586 1.21921 1.01758 0.97058 0.96470 1.21307 1.00694 0.94843 0.83512 1.47858 1.10180 1.65135 1.12910 1.21755 0.91684 0.98283 0.94537 1.20342 0.81024 0.77218 0.89394 1.90685 1.48894 1.42920 1.56544 1.23560 1.07047 1.04394 0.95091 1.85382 0.98893 1.83587 1.15705 1.22864 0.98993 1.49015 0.97441 0.90959 1.24986 0.94805 0.94824 0.98948 1.70016 1.00930 1.42390 1.36944 0.86176 0.78064 0.78622 0.82681 1.20278 1.20757 1.19706 0.90124 0.90534 0.90810 0.90862 0.89467 0.89333 0.81000 0.90683 0.94484 0.83865 0.91083 0.94892 0.91310 0.91164 0.90958 0.89952 0.92794 0.90729 0.91380 0.89284 0.89325 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.26 36.00 0.37 -0.28 16 2 C 0.08 0.87 7.22 -82.40 -0.59 0.27 16 3 N -0.30 -3.50 12.57 33.67 0.42 -3.07 16 4 N -0.38 -3.40 4.01 -68.16 -0.27 -3.67 16 5 C 0.10 0.47 11.47 59.85 0.69 1.16 16 6 C 0.07 0.59 11.40 -17.22 -0.20 0.40 16 7 C -0.23 -2.18 5.61 -105.05 -0.59 -2.77 16 8 C 0.14 1.14 5.89 -4.98 -0.03 1.11 16 9 N -0.69 -6.43 6.49 -115.06 -0.75 -7.18 16 10 C 0.06 0.56 5.69 -3.83 -0.02 0.54 16 11 C -0.13 -1.46 5.80 -26.73 -0.16 -1.61 16 12 C 0.12 1.41 5.41 -4.04 -0.02 1.38 16 13 N -0.62 -8.82 2.87 -181.57 -0.52 -9.35 16 14 C 0.08 0.85 10.24 59.85 0.61 1.46 16 15 C 0.53 10.21 7.69 -10.98 -0.08 10.12 16 16 O -0.52 -11.79 15.44 5.56 0.09 -11.71 16 17 C -0.15 -3.09 4.71 36.01 0.17 -2.92 16 18 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 19 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.27 13.22 55.49 0.73 -25.53 16 23 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.55 7.50 -51.93 -0.39 0.16 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.04 0.30 7.60 -51.93 -0.39 -0.10 16 36 H 0.34 3.45 8.72 -39.29 -0.34 3.11 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 42 H 0.08 1.11 7.42 -51.93 -0.39 0.72 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.81 6.44 -51.93 -0.33 0.47 16 45 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 46 H 0.09 1.70 7.40 -51.92 -0.38 1.32 16 47 H 0.09 1.69 8.11 -51.91 -0.42 1.27 16 48 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 415.50 15.07 6.26 6.26 Total: -1.00 -37.12 415.50 -9.04 -46.16 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -8.11 Total: -0.29 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 0.34 Total: -4.15 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.38 Total: -48.81 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -37.12 -9.04 -46.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754358339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.046 kcal (2) G-P(sol) polarization free energy of solvation -37.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds